Diverse bacteria isolated from root nodules of wild Vicia species grown in temperate region of China

Archives of Microbiology

Volumn 190, Issue 6, 2008, Pages 657-671

  Lei, Xia ^a   Wang, En Tao ^b   Chen, Wen Feng ^a   Sui, Xin Hua ^a   Chen, Wen Xin ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

Diversity; Housekeeping gene; Phylogeny; Rhizobia; Symbiotic gene; Vicia

Indexed keywords

DNA 16S; INTERNAL TRANSCRIBED SPACER;

ARTICLE; ATPD GENE; AZORHIZOBIUM; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BEAN; BRADYRHIZOBIUM; CHINA; DNA FINGERPRINTING; ENDOPHYTE; ENSIFER; ENVIRONMENTAL TEMPERATURE; GLNII GENE; HORIZONTAL GENE TRANSFER; HOUSEKEEPING GENE; MESORHIZOBIUM; MICROBIAL DIVERSITY; NIFH GENE; NODC GENE; NODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLLOBACTERIUM; PLANT GROWTH; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RESTRICTION MAPPING; RHIZOBIUM; SHINELLA; SINORHIZOBIUM; SYMBIOSIS; UNINDEXED SEQUENCE;

BACTERIA; BACTERIAL PROTEINS; CHINA; DNA, RIBOSOMAL; GENETIC VARIATION; GEOGRAPHY; OXIDOREDUCTASES; PHYLOGENY; PLANT ROOTS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RHIZOBIUM; SYMBIOSIS; VICIA;

AGROBACTERIUM; BACTERIA (MICROORGANISMS); BRADYRHIZOBIUM; ENSIFER; MESORHIZOBIUM HUAKUII; PHYLLOBACTERIUM; RHIZOBIUM GALLICUM; RHIZOBIUM LEGUMINOSARUM; SINORHIZOBIUM MELILOTI; VICIA;

EID: 56349157398     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-008-0418-y     Document Type: Article

References (46)

1. A Alves I Henriques S Fragoeiro C Santos AJL Phillips A Correia 2004 Applicability of rep-PCR genomic fingerprinting to molecular discrimination of members of the genera Phaeoacremonium and Phaeomoniella Plant Pathol 53 629 634
2. FJ De Bruijn 1992 Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria Appl Environ Microbiol 58 2180 2187
3. P García-Fraile R Rivas A Willems A Peix M Martens E Martínez-Molina PF Mateos E Velázquez 2007 Rhizobium cellulosilyticum sp. nov., isolated from sawdust of Populus alba Int J Syst Evol Microbiol 57 844 848
4. CT Gu ET Wang XH Sui WF Chen WX Chen 2007 Diversity and geographical distribution of rhizobia associated with Lespedeza spp. in temperate and subtropical regions of China Arch Microbiol 188 355 365
5. FL Kan ZY Chen ET Wang CF Tian XH Sui WX Chen 2007 Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai-Tibet plateau and in other zones of China Arch Microbiol 188 103 115
6. S Kumar K Tamura M Nei 2004 MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinf 5 150 163
7. SW Kwon JY Park JS Kim JW Kang YH Cho CK Lim MA Parker GB Lee 2005 Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences Int J Syst Evol Microbiol 55 263 270
8. G Laguerre SM Nour V Macheret J Sanjuan P Drouin N Amarger 2001 Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts Microbiology 147 981 993
9. G Laguerre P Louvrier MR Allard N Amarger 2003 Compatibility of rhizobial genotypes within natural populations of Rhizobium leguminosarum biovar viciae for nodulation of host legumes Appl Environ Microbiol 69 2276 2283
10. JH Li ET Wang WX Chen 2008 Genetic diversity and potential for promotion of plant growth detected in nodule endophytic bacteria of soybean grown in Heilongjiang Province of China Soil Biol Biochem 40 238 246
11. DX Lin CX Man ET Wang WX Chen 2007 Diverse rhizobia that nodulate two species of Kummerowia in China Arch Microbiol 188 495 507
12. DX Lin ET Wang H Tang TX Han YR He SH Guan WX Chen 2008 Shinella kummerowiae sp. nov., a novel symbiotic bacterium isolated from root nodule of the herbal legume Kummerowia stipulacea Int J Syst Evol Microbiol 58 1409 1413
13. M Mahdhi A Nzoué F Gueye C Merabet P de Lajudie M Mars 2007 Phenotypic and genotypic diversity of Genista saharae microsymbionts from the infra-arid region of Tunisia Lett Appl Microbiol 45 604 609
14. S Mantelin MF Saux F Zakhia G Béna S Bonneau H Jeder P de Lajudie JC Cleyet-Marel 2006 Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov Int J Syst Evol Microbiol 56 827 839
15. M Martens M Delaere R Coopman P De Vos M Gillis A Willems 2007 Multilocus sequence analysis of Ensifer and related taxa Int J Syst Evol Microbiol 57 489 503
16. B Martin O Humbert M Camara E Guenzi J Walker T Mitchell P Andrew M Prudhomme G Alloing R Hakenbaeck DA Morrison GJ Boulnois JP Claverys 1992 A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae Nucleic Acids Res 20 3479 3483
17. SH Miller RM Elliot JT Sullivan CW Ronson 2007 Host-specific regulation of symbiotic nitrogen fixation in Rhizobium leguminosarum biovar trifolii Microbiology 153 3184 3195
18. G Moschetti A Peluso A Protopapa M Anastasio O Pepe R Defez 2005 Use of nodulation pattern, stress tolerance, nodC gene amplification, RAPD-PCR and RFLP-16S rDNA analysis to discriminate genotypes of Rhizobium leguminosarum biovar viciae Syst Appl Microbiol 28 619 631
19. M Mrabet B Mnasri SB Romdhane G Laguerre ME Aouani R Mhamdi 2006 Agrobacterium strains isolated from root nodules of common bean specifically reduce nodulation by Rhizobium gallicum FEMS Microbiol Ecol 56 304 309
20. LA Mutch JPW Young 2004 Diversity and specificity of Rhizobium leguminosarum biovar viciae on wild and cultivated legumes Mol Ecol 13 2435 2444
21. E Navarro P Simonet P Normand R Bardin 1992 Characterization of natural populations of Nitrobacter spp. using PCR-RFLP analysis of the ribosomal intergenic spacer Arch Microbiol 157 107 115
22. G Nick LA Rasanen P de Lajudie M Gillis K Lindström 1999 Genomic screening of rhizobia isolated from root nodules of tropical leguminous trees using DNA-DNA dot-blot hybridization and rep-PCR Syst Appl Microbiol 22 287 299
23. P Normand P Lapierre LS Tisa JP Gogarten N Alloisio E Bagnarol CA Bassi AM Berry DM Bickhart N Choisne A Couloux B Cournoyer S Cruveiller V Daubin N Demange MP Francino E Goltsman Y Huang OR Kopp L Labarre A Lapidus C Lavire J Marechal M Martinez JE Mastronunzio BC Mullin J Niemann P Pujic T Rawnsley Z Rouy C Schenowitz A Sellstedt F Tavares JP Tomkins D Vallenet C Valverde LG Wall Y Wang C Medigue DR Benson 2007 Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography Genome Res 17 7 15
24. KM Palmer JP Young 2000 Higher diversity of Rhizobium leguminosarum biovar viciae populations in arable soils than in grass soils Appl Environ Microbiol 66 2445 2450
25. C Ponsonnet X Nesme 1994 Identification of Agrobacterium strains by PCR-RFLP analysis of pTi and chromosomal regions Arch Microbiol 161 300 309
26. S Sarita PK Sharma UB Priefer J Prell 2005 Direct amplification of rhizobial nodC sequences from soil total DNA and comparison to nodC diversity of root nodule isolates FEMS Microbiol Ecol 54 1 11
27. ZY Tan XD Xu ET Wang JL Gao E Martìnez-Romero WX Chen 1997 Phylogenetic and genetic relationships of Mesorhizobium tianshanense and related rhizobia Int J Syst Bacteriol 47 874 879
28. ZY Tan ET Wang GX Peng ME Zhu E Martinez-Romero WX Chen 1999 Characterization of bacteria isolated from wild legumes in the north-western regions of China Int J Syst Bacteriol 49 1455 1469
29. Z Terefework S Kaijalainen K Lindström 2001 AFLP fingerprint as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega offcinalis J Biotechnol 91 169 180
30. JD Thompson TJ Gibson F Plewniak F Jeanmougim DG Higgins 1997 The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tool Nucleic Acid Res 24 4867 4882
31. CF Tian ET Wang TX Han XH Sui WX Chen 2007 Genetic diversity of rhizobia associated with Vicia faba in three ecological regions of China Arch Microbiol 188 273 282
32. SL Turner JP Young 2000 The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications Mol Biol Evol 17 309 319
33. A Valverde JM Igual A Peix E Cervantes E Velázquez 2006 Rhizobium lusitanum sp. nov. a bacterium that nodulates Phaseolus vulgaris Int J Syst Evol Microbiol 56 2631 2637
34. P van Berkum D Beyene FT Vera HH Keyser 1995 Variability among Rhizobium strains originating from nodules of Vicia faba Appl Environ Microbiol 61 2649 2653
35. L Vauterin P Vauterin 1992 Computer-aided objective comparison of electrophoresis patterns for grouping and identification of microorganisms Eur Microbiol 1 37 41
36. V Ventorino M Chiurazzi M Aponte O Pepe G Moschetti 2007 Genetic diversity of a natural population of Rhizobium leguminosarum bv. viciae nodulating plants of Vicia faba in the Vesuvian area Curr Microbiol 55 512 517
37. J Versalovic T Koeuth JR Lupski 1991 Distribution of repetitive DNA sequences in the eubacteria and application to fingerprinting of bacterial genomes Nucleic Acids Res 19 6823 6831
38. J Versalovic M Schneider FJ de Bruijn JR Lupski 1994 Genomic fingerprinting of bacteria using repetitive sequence based polymerase chain reaction Methods Mol Cell Biol 5 25 40
39. Vincent JM (1970) A manual for the practical study of root nodule bacteria. Blackwell, Oxford
40. P Vinuesa C Silva D Werner E Martínez-Romero 2005 Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation Mol Phylogenet Evol 34 29 54
41. ET Wang ZY Tan A Willems M Fernandez-Lopez B Reinhold-Hurek E Martinez-Romero 2002 Sinorhizobium morelense sp. nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics Int J Syst Evol Microbiol 52 1687 1693
42. LL Wang ET Wang J Liu Y Li WX Chen 2006 Endophytic occupation of root nodules and roots of Melilotus dentatus by Agrobacterium tumefaciens Microb Ecol 52 436 443
43. JJ Wernegreen EE Harding MA Riley 1997 Rhizobium gone native: unexpected plasmid stability of indigenous Rhizobium leguminosarum Proc Natl Acad Sci USA 94 5483 5488
44. SS Yang RA Bellogin A Buendia M Camacho M Chen T Cubo A Daza CL Diaz MR Espuny R Gutierrez M Harteveld XH Li MC Lyra N Madinabeitia C Medina L Miao FJ Ollero MM Olsthoorn DN Rodriguez C Santamaria HR Schlaman HP Spaink F Temprano JE Thomas-Oates AA Van Brussel JM Vinardell F Xie J Yang HY Zhang J Zhen J Zhou JE Ruiz-Sainz 2001 Effect of pH and soybean cultivars on the quantitative analyses of soybean rhizobia populations J Biotechnol 91 243 255
45. JM Young 2003 The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination "Sinorhizobium adhaerens" (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion Int J Syst Evol Microbiol 53 2107 2110
46. XX Zhang B Kosier UB Priefer 2001 Genetic diversity of indigenous Rhizobium leguminosarum bv. viciae isolates nodulating two different host plants during soil restoration with alfalfa Mol Ecol 10 2297 2305