메뉴 건너뛰기




Volumn 29, Issue 6, 2006, Pages 463-469

Evaluation of recA gene as a phylogenetic marker in the classification of dairy propionibacteria

Author keywords

16S rRNA; Dairy propionibacteria; Identification; P. cyclohexanicum; P. microaerophilum; Phylogenetic markers; RecA gene; Species specific PCR

Indexed keywords

NUCLEOTIDE; RIBOSOME RNA;

EID: 33747070044     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2006.01.001     Document Type: Article
Times cited : (20)

References (21)
  • 2
    • 0024690140 scopus 로고
    • Inter- and intrageneric relationship of the genus Propionibacterium as determined by 16S rRNA sequences
    • Charfreitag O., and Stackenbrandt E. Inter- and intrageneric relationship of the genus Propionibacterium as determined by 16S rRNA sequences. J. Gen. Microbiol. 135 (1989) 2065-2070
    • (1989) J. Gen. Microbiol. , vol.135 , pp. 2065-2070
    • Charfreitag, O.1    Stackenbrandt, E.2
  • 3
    • 0000191488 scopus 로고
    • Genus Propionibacterium
    • Sneath P.H.A., Mair N.S., and Sharpe M.E. (Eds), The Williams and Wilkins Co., Baltimore, MD
    • Cummins C.S., and Johnson J.L. Genus Propionibacterium. In: Sneath P.H.A., Mair N.S., and Sharpe M.E. (Eds). Bergey's Manual of Systematic Bacteriology vol. 2. (1986), The Williams and Wilkins Co., Baltimore, MD 1346-1353
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1346-1353
    • Cummins, C.S.1    Johnson, J.L.2
  • 4
    • 0031872391 scopus 로고    scopus 로고
    • Classification and identification of propionibacteria based on ribosomal RNA genes and PCR
    • Dasen G., Smutny J., Teuber M., and Meile L. Classification and identification of propionibacteria based on ribosomal RNA genes and PCR. Syst. Appl. Microbiol. 21 (1998) 251-259
    • (1998) Syst. Appl. Microbiol. , vol.21 , pp. 251-259
    • Dasen, G.1    Smutny, J.2    Teuber, M.3    Meile, L.4
  • 6
    • 0029610851 scopus 로고
    • The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species
    • Eisen J.A. The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J. Mol. Evol. 41 (1995) 1105-1123
    • (1995) J. Mol. Evol. , vol.41 , pp. 1105-1123
    • Eisen, J.A.1
  • 8
    • 0000461280 scopus 로고
    • Confidence-limits on phylogenies - an approach using the bootstrap
    • Felsenstein J. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
    • Fox G.E., Wisotzkey J.D., and Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42 (1992) 166-170
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 10
    • 0028790653 scopus 로고
    • Inferring phylogenies from DNA sequences of unequal base compositions
    • Galtier N., and Gouy M. Inferring phylogenies from DNA sequences of unequal base compositions. Proc. Natl. Acad. Sci. USA 92 (1995) 11317-11321
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 11317-11321
    • Galtier, N.1    Gouy, M.2
  • 12
    • 0030752877 scopus 로고    scopus 로고
    • Propionibacterium cyclohexanicum sp. nov., a new acid-tolerant omega-cyclohexyl fatty acid-containing propionibacterium isolated from spoiled orange juice
    • Kusano K., Yamada H., Niwa M., and Yamasato K. Propionibacterium cyclohexanicum sp. nov., a new acid-tolerant omega-cyclohexyl fatty acid-containing propionibacterium isolated from spoiled orange juice. Int. J. Syst. Bacteriol. 47 (1997) 825-831
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 825-831
    • Kusano, K.1    Yamada, H.2    Niwa, M.3    Yamasato, K.4
  • 14
    • 3042742568 scopus 로고    scopus 로고
    • PCR detection and 16S rRNA sequence-based phylogeny of a novel Propionibacterium acidipropionici applicable for enhanced fermentation of high moisture corn
    • Romanov M.N., Bato R.V., Yokoyama M.T., and Rust S.R. PCR detection and 16S rRNA sequence-based phylogeny of a novel Propionibacterium acidipropionici applicable for enhanced fermentation of high moisture corn. J. Appl. Microbiol. 97 (2004) 38-47
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 38-47
    • Romanov, M.N.1    Bato, R.V.2    Yokoyama, M.T.3    Rust, S.R.4
  • 15
    • 0032876355 scopus 로고    scopus 로고
    • Genus- and species-specific PCR-based detection of dairy propionibacteria in environmental samples by using primers targeted to the genes encoding 16S rRNA
    • Rossi F., Torriani S., and Dellaglio F. Genus- and species-specific PCR-based detection of dairy propionibacteria in environmental samples by using primers targeted to the genes encoding 16S rRNA. Appl. Environ. Microbiol. 65 (1999) 4241-4244
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4241-4244
    • Rossi, F.1    Torriani, S.2    Dellaglio, F.3
  • 16
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., and Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44 (1994) 846-849
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 17
    • 0021716351 scopus 로고
    • Estimation of evolutionary distance between nucleotide sequences
    • Tajima F., and Ney M. Estimation of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 1 (1984) 269-285
    • (1984) Mol. Biol. Evol. , vol.1 , pp. 269-285
    • Tajima, F.1    Ney, M.2
  • 19
    • 0035882419 scopus 로고    scopus 로고
    • Characterization of the 16S-23S and 23S-5S rRNA intergenic spacer regions of dairy propionibacteria and their identification with species-specific primers by PCR
    • Tilsala-Timisjarvi A., and Alatossava T. Characterization of the 16S-23S and 23S-5S rRNA intergenic spacer regions of dairy propionibacteria and their identification with species-specific primers by PCR. Int. J. Food Microbiol. 68 (2001) 45-52
    • (2001) Int. J. Food Microbiol. , vol.68 , pp. 45-52
    • Tilsala-Timisjarvi, A.1    Alatossava, T.2
  • 20
    • 0035430327 scopus 로고    scopus 로고
    • Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers
    • Torriani S., Felis G.E., and Dellaglio F. Differentiation of Lactobacillus plantarum, L. pentosus, and L. paraplantarum by recA gene sequence analysis and multiplex PCR assay with recA gene-derived primers. Appl. Environ. Microbiol. 67 (2001) 3450-3454
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 3450-3454
    • Torriani, S.1    Felis, G.E.2    Dellaglio, F.3
  • 21
    • 0028509254 scopus 로고
    • TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer Y., and De Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 10 (1994) 569-570
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 569-570
    • Van de Peer, Y.1    De Wachter, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.