메뉴 건너뛰기




Volumn 13, Issue 6, 2010, Pages 744-749

Modelling dynamic plant cells

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MODEL; CIRCADIAN RHYTHM; CYTOLOGY; GENETICS; METABOLISM; PHYSIOLOGY; PLANT; REVIEW; SIGNAL TRANSDUCTION; THEORETICAL MODEL;

EID: 78649632419     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2010.10.002     Document Type: Review
Times cited : (13)

References (62)
  • 1
    • 77952903335 scopus 로고    scopus 로고
    • Genomics and bioinformatics resources for crop improvement
    • Mochida K., Shinozaki K. Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol 2010, 51:497-523.
    • (2010) Plant Cell Physiol , vol.51 , pp. 497-523
    • Mochida, K.1    Shinozaki, K.2
  • 2
    • 85133426777 scopus 로고    scopus 로고
    • Elsevier, Amsterdam, F.C. Boogerd, F. Bruggeman, J.H.S. Hofmeyr, H.V. Westerhoff (Eds.)
    • Systems Biology Philosophical Foundations 2007, Elsevier, Amsterdam. F.C. Boogerd, F. Bruggeman, J.H.S. Hofmeyr, H.V. Westerhoff (Eds.).
    • (2007) Systems Biology Philosophical Foundations
  • 3
    • 67349212928 scopus 로고    scopus 로고
    • Insights into plant metabolic networks from steady-state meabolic flux analysis
    • Kruger N.J., R. Ratcliffe G. Insights into plant metabolic networks from steady-state meabolic flux analysis. Biochimie 2009, 91:697-702.
    • (2009) Biochimie , vol.91 , pp. 697-702
    • Kruger, N.J.1    R. Ratcliffe, G.2
  • 4
    • 73149122136 scopus 로고    scopus 로고
    • Applications of genome-scale metabolic reconstructions
    • Oberhardt M.A., Palsson B.Ø., Papin J.A. Applications of genome-scale metabolic reconstructions. Mol Syst Biol 2009, 5:320.
    • (2009) Mol Syst Biol , vol.5 , pp. 320
    • Oberhardt, M.A.1    Palsson, B.Ø.2    Papin, J.A.3
  • 5
    • 70350676551 scopus 로고    scopus 로고
    • A genome-scale metabolic model of Arabidopsis and some of its properties
    • Poolman M.G., Miguet L., Sweetlove L.J., Fell D.A. A genome-scale metabolic model of Arabidopsis and some of its properties. Plant Physiol 2009, 151:1570-1581.
    • (2009) Plant Physiol , vol.151 , pp. 1570-1581
    • Poolman, M.G.1    Miguet, L.2    Sweetlove, L.J.3    Fell, D.A.4
  • 6
    • 78649631909 scopus 로고    scopus 로고
    • The application of flux balance analysis in systems biology
    • Erwin P.G., Chavali A.K., Papin J.A. The application of flux balance analysis in systems biology. WIREs Syst Biol Med 2010, 2:372-382.
    • (2010) WIREs Syst Biol Med , vol.2 , pp. 372-382
    • Erwin, P.G.1    Chavali, A.K.2    Papin, J.A.3
  • 7
    • 58449106341 scopus 로고    scopus 로고
    • Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism
    • Grafahrend-Belau E., Schreiber F., Koschutzki D., Junker B.H. Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiol 2009, 149:585-598.
    • (2009) Plant Physiol , vol.149 , pp. 585-598
    • Grafahrend-Belau, E.1    Schreiber, F.2    Koschutzki, D.3    Junker, B.H.4
  • 8
    • 75949123498 scopus 로고    scopus 로고
    • Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labelling
    • Masakapalli S.K., Le Lay P., Huddleston J.E., Pollock N.L., Kruger N.J., Ratcliffe R.G. Subcellular flux analysis of central metabolism in a heterotrophic Arabidopsis cell suspension using steady-state stable isotope labelling. Plant Physiol 2010, 152:602-619.
    • (2010) Plant Physiol , vol.152 , pp. 602-619
    • Masakapalli, S.K.1    Le Lay, P.2    Huddleston, J.E.3    Pollock, N.L.4    Kruger, N.J.5    Ratcliffe, R.G.6
  • 9
    • 34547662188 scopus 로고    scopus 로고
    • Determination of metabolic fluxes in a non-steady-state system
    • Baxter C.J., Liu J.L., Fernie A.R., Sweetlove L.J. Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 2007, 68:2313-2319.
    • (2007) Phytochemistry , vol.68 , pp. 2313-2319
    • Baxter, C.J.1    Liu, J.L.2    Fernie, A.R.3    Sweetlove, L.J.4
  • 11
    • 76349125292 scopus 로고    scopus 로고
    • Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
    • Lee I., Ambaru B., Thakkar P., Marcotte E.M., Rhee S.Y. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol 2010, 28:149-156.
    • (2010) Nat Biotechnol , vol.28 , pp. 149-156
    • Lee, I.1    Ambaru, B.2    Thakkar, P.3    Marcotte, E.M.4    Rhee, S.Y.5
  • 12
    • 33745075591 scopus 로고    scopus 로고
    • Tools for kinetic modeling of biochemical networks
    • Alves R., Antunes F., Salvador A. Tools for kinetic modeling of biochemical networks. Nat Biotechnol 2006, 24:667-672.
    • (2006) Nat Biotechnol , vol.24 , pp. 667-672
    • Alves, R.1    Antunes, F.2    Salvador, A.3
  • 14
    • 58149354813 scopus 로고    scopus 로고
    • Mathematical modelling of aliphatic glucosinolate chain length distribution in Arabidopsis thaliana leaves
    • Knoke B., Textor S., Gershenzon J., Schuster S. Mathematical modelling of aliphatic glucosinolate chain length distribution in Arabidopsis thaliana leaves. Phytochem Rev 2009, 8:39-51.
    • (2009) Phytochem Rev , vol.8 , pp. 39-51
    • Knoke, B.1    Textor, S.2    Gershenzon, J.3    Schuster, S.4
  • 15
    • 34547654118 scopus 로고    scopus 로고
    • Kinetic model of sucrose accumulation in maturing sugarcane culm tissue
    • Uys L., Botha F.C., Hofmeyr J.H., Rohwer J.M. Kinetic model of sucrose accumulation in maturing sugarcane culm tissue. Phytochemistry 2007, 68:2375-2392.
    • (2007) Phytochemistry , vol.68 , pp. 2375-2392
    • Uys, L.1    Botha, F.C.2    Hofmeyr, J.H.3    Rohwer, J.M.4
  • 16
    • 42949164125 scopus 로고    scopus 로고
    • Formulating genome-scale kinetic models in the post-genome era
    • Jamshidi N., Palsson B. Formulating genome-scale kinetic models in the post-genome era. Mol Syst Biol 2008, 4:171.
    • (2008) Mol Syst Biol , vol.4 , pp. 171
    • Jamshidi, N.1    Palsson, B.2
  • 18
    • 34447314196 scopus 로고    scopus 로고
    • From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle
    • Steuer R., Nesi A.N., Fernie A.R., Gross T., Blasius B., Selbig J. From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 2007, 23:1378-1385.
    • (2007) Bioinformatics , vol.23 , pp. 1378-1385
    • Steuer, R.1    Nesi, A.N.2    Fernie, A.R.3    Gross, T.4    Blasius, B.5    Selbig, J.6
  • 19
    • 70450187500 scopus 로고    scopus 로고
    • The role of ion fluxes in polarized cell growth and morphogenesis: the pollen tube as an experimental paradigm
    • Michard E., Alves F., Feijó J.A. The role of ion fluxes in polarized cell growth and morphogenesis: the pollen tube as an experimental paradigm. Int J Dev Biol 2009, 53:1609-1622.
    • (2009) Int J Dev Biol , vol.53 , pp. 1609-1622
    • Michard, E.1    Alves, F.2    Feijó, J.A.3
  • 20
    • 0041966088 scopus 로고    scopus 로고
    • Control of pollen tube growth: role of ion gradients and fluxes
    • Holdaway-Clarke T.L., Hepler P.K. Control of pollen tube growth: role of ion gradients and fluxes. New Phytol 2003, 159:539-563.
    • (2003) New Phytol , vol.159 , pp. 539-563
    • Holdaway-Clarke, T.L.1    Hepler, P.K.2
  • 21
    • 45849152067 scopus 로고    scopus 로고
    • Model for calcium dependent oscillatory growth in pollen tubes
    • Kroeger J.H., Geitmann A., Grant M. Model for calcium dependent oscillatory growth in pollen tubes. J Theor Biol 2008, 253:363-374.
    • (2008) J Theor Biol , vol.253 , pp. 363-374
    • Kroeger, J.H.1    Geitmann, A.2    Grant, M.3
  • 22
    • 29344449148 scopus 로고    scopus 로고
    • Oscillations in plant membrane transport: model predictions, experimental validation, and physiological implications
    • Shabala S., Shabala L., Gradmann D., Chen Z., Newman I., Mancus S. Oscillations in plant membrane transport: model predictions, experimental validation, and physiological implications. J Exp Bot 2006, 57:171-184.
    • (2006) J Exp Bot , vol.57 , pp. 171-184
    • Shabala, S.1    Shabala, L.2    Gradmann, D.3    Chen, Z.4    Newman, I.5    Mancus, S.6
  • 23
    • 76049128440 scopus 로고    scopus 로고
    • Calcium participates in feedback regulation of the oscillating ROP1 Rho GTPase in pollen tubes
    • Yan A., Xu G., Yang Z.B. Calcium participates in feedback regulation of the oscillating ROP1 Rho GTPase in pollen tubes. Proc Natl Acad Sci USA 2009, 106:22002-22007.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 22002-22007
    • Yan, A.1    Xu, G.2    Yang, Z.B.3
  • 30
    • 35548964342 scopus 로고    scopus 로고
    • Auxin transport is sufficient to generate a maximum and gradient guiding root growth
    • Grieneisen V.A., Xu J., Marée A.F., Hogeweg P., Scheres B. Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 2007, 449:1008-1013.
    • (2007) Nature , vol.449 , pp. 1008-1013
    • Grieneisen, V.A.1    Xu, J.2    Marée, A.F.3    Hogeweg, P.4    Scheres, B.5
  • 33
    • 77953239558 scopus 로고    scopus 로고
    • Modelling and experimental analysis of hormonal crosstalk in Arabidopsis
    • Liu J.L., Mehdi S., Topping J., Tarkowski P., Lindsey K. Modelling and experimental analysis of hormonal crosstalk in Arabidopsis. Mol Syst Biol 2010, 6:373.
    • (2010) Mol Syst Biol , vol.6 , pp. 373
    • Liu, J.L.1    Mehdi, S.2    Topping, J.3    Tarkowski, P.4    Lindsey, K.5
  • 35
    • 77949539536 scopus 로고    scopus 로고
    • A theory for ROP localisation by auxin in Arabidopsis root hair cells
    • Payne R.J.H., Grierson C.S. A theory for ROP localisation by auxin in Arabidopsis root hair cells. PLoS One 2009, 4:e8337.
    • (2009) PLoS One , vol.4
    • Payne, R.J.H.1    Grierson, C.S.2
  • 38
    • 33750270802 scopus 로고    scopus 로고
    • Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling
    • Li S., Assmann S.M., Albert R. Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling. PLoS Biol 2006, 4:e312.
    • (2006) PLoS Biol , vol.4
    • Li, S.1    Assmann, S.M.2    Albert, R.3
  • 40
  • 43
    • 66449087281 scopus 로고    scopus 로고
    • The circadian system in higher plants
    • Harmer S.L. The circadian system in higher plants. Annu Rev Plant Biol 2009, 60:357-377.
    • (2009) Annu Rev Plant Biol , vol.60 , pp. 357-377
    • Harmer, S.L.1
  • 46
    • 15244359622 scopus 로고    scopus 로고
    • Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana
    • Locke J.C.W., Millar A.J., Turner M.S. Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J Theor Biol 2005, 234:383-393.
    • (2005) J Theor Biol , vol.234 , pp. 383-393
    • Locke, J.C.W.1    Millar, A.J.2    Turner, M.S.3
  • 48
    • 62449114708 scopus 로고    scopus 로고
    • A functional genomics approach reveals CHE as a component of the Arabidopsis Circadian Clock
    • Pruneda-Paz J.L., Breton G., Para A., Kay S.A. A functional genomics approach reveals CHE as a component of the Arabidopsis Circadian Clock. Science 2009, 323:1481-1485.
    • (2009) Science , vol.323 , pp. 1481-1485
    • Pruneda-Paz, J.L.1    Breton, G.2    Para, A.3    Kay, S.A.4
  • 51
    • 70450173299 scopus 로고    scopus 로고
    • Weather and seasons together demand complex biological clock
    • Troein C., Locke J.C.W., Turner M.S., Millar A.J. Weather and seasons together demand complex biological clock. Curr Biol 2009, 19:1961-1964.
    • (2009) Curr Biol , vol.19 , pp. 1961-1964
    • Troein, C.1    Locke, J.C.W.2    Turner, M.S.3    Millar, A.J.4
  • 52
    • 33846839325 scopus 로고    scopus 로고
    • Temperature compensation through systems biology
    • Ruoff P., Zakhartsev M., Westerhoff H.V. Temperature compensation through systems biology. FEBS J 2007, 274:940-950.
    • (2007) FEBS J , vol.274 , pp. 940-950
    • Ruoff, P.1    Zakhartsev, M.2    Westerhoff, H.V.3
  • 53
    • 51749113592 scopus 로고    scopus 로고
    • Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli
    • Covert M.W., Xiao N., Chen T.J., Karr J.R. Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. Bioinformatics 2008, 24:2044-2050.
    • (2008) Bioinformatics , vol.24 , pp. 2044-2050
    • Covert, M.W.1    Xiao, N.2    Chen, T.J.3    Karr, J.R.4
  • 54
    • 33745178476 scopus 로고    scopus 로고
    • Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
    • Herrgard M.J., Lee B.S., Portnoy V., Palsson B.O. Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae. Genome Res 2006, 16:627-635.
    • (2006) Genome Res , vol.16 , pp. 627-635
    • Herrgard, M.J.1    Lee, B.S.2    Portnoy, V.3    Palsson, B.O.4
  • 55
    • 67650872959 scopus 로고    scopus 로고
    • Functional states of the genome-scale Escherichia coli transcriptional regulatory system
    • Gianchandani E.P., Joyce A.R., Palsson B.Ø., Papin J.A. Functional states of the genome-scale Escherichia coli transcriptional regulatory system. PLoS Comput Biol 2009, 5:e1000403.
    • (2009) PLoS Comput Biol , vol.5
    • Gianchandani, E.P.1    Joyce, A.R.2    Palsson, B.Ø.3    Papin, J.A.4
  • 57
    • 70350692995 scopus 로고    scopus 로고
    • The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts, metabolites, and flux
    • Lehmann M., Schwarzlander M., Obata T., Sirikantaramas S., Burow M., Olsen C.E., Tohge T., Fricker M.D., Møller B.L., Fernie A.R., et al. The metabolic response of Arabidopsis roots to oxidative stress is distinct from that of heterotrophic cells in culture and highlights a complex relationship between the levels of transcripts, metabolites, and flux. Mol Plant 2009, 2:390-406.
    • (2009) Mol Plant , vol.2 , pp. 390-406
    • Lehmann, M.1    Schwarzlander, M.2    Obata, T.3    Sirikantaramas, S.4    Burow, M.5    Olsen, C.E.6    Tohge, T.7    Fricker, M.D.8    Møller, B.L.9    Fernie, A.R.10
  • 59
    • 39149113411 scopus 로고    scopus 로고
    • Modular cell biology: retroactivity and insulation
    • Del Vecchio D., Ninfa A.J., Sontag E.D. Modular cell biology: retroactivity and insulation. Mol Syst Biol 2008, 4:161.
    • (2008) Mol Syst Biol , vol.4 , pp. 161
    • Del Vecchio, D.1    Ninfa, A.J.2    Sontag, E.D.3
  • 60
    • 39149124415 scopus 로고    scopus 로고
    • Modularity defined
    • Sauro H.M. Modularity defined. Mol Syst Biol 2008, 4:166.
    • (2008) Mol Syst Biol , vol.4 , pp. 166
    • Sauro, H.M.1
  • 61
    • 65749091197 scopus 로고    scopus 로고
    • A kinetic model for the metabolism of the herbicide safener fenclorim in Arabidopsis thaliana
    • Liu J.L., Brazier-Hicks M., Edwards R. A kinetic model for the metabolism of the herbicide safener fenclorim in Arabidopsis thaliana. Biophys Chem 2009, 143:85-94.
    • (2009) Biophys Chem , vol.143 , pp. 85-94
    • Liu, J.L.1    Brazier-Hicks, M.2    Edwards, R.3
  • 62
    • 66349111152 scopus 로고    scopus 로고
    • Experimentally observed phenomena on cardiacenergetics in heart failure emerge from simulations of cardiac metabolism
    • Wu F., Zhang J.Y., Beard D.A. Experimentally observed phenomena on cardiacenergetics in heart failure emerge from simulations of cardiac metabolism. Natl Acad Sci USA 2009, 106:7143-7148.
    • (2009) Natl Acad Sci USA , vol.106 , pp. 7143-7148
    • Wu, F.1    Zhang, J.Y.2    Beard, D.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.