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Volumn 21, Issue 12, 2010, Pages 2085-2094

The Extent and Effects of Peptide Sequence Scrambling Via Formation of Macrocyclic b Ions in Model Proteins

Author keywords

[No Author keywords available]

Indexed keywords

MACROCYCLICS; MODEL PROTEINS; PEPTIDE IONS; PEPTIDE SEQUENCES; PROTEIN IDENTIFICATION; PROTEOMICS; TANDEM MASS SPECTROMETRY; TRYPTIC PEPTIDES;

EID: 78649529380     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2010.09.001     Document Type: Article
Times cited : (39)

References (41)
  • 2
    • 0023399896 scopus 로고
    • Characterization by Tandem Mass Spectrometry of Structural Modifications in Proteins
    • Biemann K., Scoble H.A. Characterization by Tandem Mass Spectrometry of Structural Modifications in Proteins. Science 1987, 237:992-998.
    • (1987) Science , vol.237 , pp. 992-998
    • Biemann, K.1    Scoble, H.A.2
  • 3
    • 0035241690 scopus 로고    scopus 로고
    • Mass Spectrometry in Proteomics
    • Aebersold R., Goodlett D.R. Mass Spectrometry in Proteomics. Chem. Rev 2001, 101:269-296.
    • (2001) Chem. Rev , vol.101 , pp. 269-296
    • Aebersold, R.1    Goodlett, D.R.2
  • 4
    • 0037435030 scopus 로고    scopus 로고
    • Mass Spectrometry-Based Proteomics
    • Mann M., Aebersold R. Mass Spectrometry-Based Proteomics. Nature 2003, 422:198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Mann, M.1    Aebersold, R.2
  • 5
    • 4444335470 scopus 로고    scopus 로고
    • The abc's (and xyz's) of Peptide Sequencing
    • Steen H., Mann M. The abc's (and xyz's) of Peptide Sequencing. Nat. Rev. Mol. Cell. Biol 2004, 5:699-711.
    • (2004) Nat. Rev. Mol. Cell. Biol , vol.5 , pp. 699-711
    • Steen, H.1    Mann, M.2
  • 6
    • 0033434080 scopus 로고    scopus 로고
    • Probability-Based Protein Identification by Searching Sequence Databases using Mass Spectrometry Data
    • Perkins D.N., Pappin D.J., Creasy D.M., Cottrell J.S. Probability-Based Protein Identification by Searching Sequence Databases using Mass Spectrometry Data. Electrophoresis 1999, 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 7
    • 0000857494 scopus 로고
    • An Approach to Correlate Tandem Mass Spectral Data of Peptides with Amino Acid Sequences in a Protein Database
    • Eng J.K., McCormack A.L., Yates J.R. An Approach to Correlate Tandem Mass Spectral Data of Peptides with Amino Acid Sequences in a Protein Database. J. Am. Soc. Mass Spectrom 1994, 5:976-989.
    • (1994) J. Am. Soc. Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 8
    • 21844457685 scopus 로고    scopus 로고
    • Fragmentation Pathways of Protonated Peptides
    • Paizs B., Suhai S. Fragmentation Pathways of Protonated Peptides. Mass Spectrom. Rev 2005, 24:508-548.
    • (2005) Mass Spectrom. Rev , vol.24 , pp. 508-548
    • Paizs, B.1    Suhai, S.2
  • 9
    • 68849096511 scopus 로고    scopus 로고
    • To b or Not to b: The Ongoing Saga of Peptide b Ions
    • Harrison A.G. To b or Not to b: The Ongoing Saga of Peptide b Ions. Mass Spectrom. Rev 2009, 28:640-654.
    • (2009) Mass Spectrom. Rev , vol.28 , pp. 640-654
    • Harrison, A.G.1
  • 10
    • 35848929694 scopus 로고    scopus 로고
    • Analysis and Validation of Proteomic Data Generated by Tandem Mass Spectrometry
    • Nesvizhskii A.E., Vitek O., Aebersold R. Analysis and Validation of Proteomic Data Generated by Tandem Mass Spectrometry. Nat. Methods 2007, 4:787-797.
    • (2007) Nat. Methods , vol.4 , pp. 787-797
    • Nesvizhskii, A.E.1    Vitek, O.2    Aebersold, R.3
  • 11
    • 28044461531 scopus 로고    scopus 로고
    • Rules Governing Protein Identification by Mass Spectrometry
    • Taylor G.K., Goodlett D.R. Rules Governing Protein Identification by Mass Spectrometry. Rapid Commun. Mass Spectrom 2005, 19:3420.
    • (2005) Rapid Commun. Mass Spectrom , vol.19 , pp. 3420
    • Taylor, G.K.1    Goodlett, D.R.2
  • 13
    • 0030861687 scopus 로고    scopus 로고
    • Novel Peptide Dissociation:Gas-Phase Intramolecular Rearrangement of Internal Amino Acid Residues
    • Vachet R.W., Bishop B.M., Erickson B.W., Glish G.L. Novel Peptide Dissociation:Gas-Phase Intramolecular Rearrangement of Internal Amino Acid Residues. J. Am. Chem. Soc 1997, 119:5481-5488.
    • (1997) J. Am. Chem. Soc , vol.119 , pp. 5481-5488
    • Vachet, R.W.1    Bishop, B.M.2    Erickson, B.W.3    Glish, G.L.4
  • 14
    • 0027918107 scopus 로고
    • Fragmentation Reactions of Multiply-Protonated Peptides and Implications for Sequencing by Tandem Mass Spectrometry with Low-Energy Collision-Induced Dissociation
    • Tang X.J., Thibault P., Boyd R.K. Fragmentation Reactions of Multiply-Protonated Peptides and Implications for Sequencing by Tandem Mass Spectrometry with Low-Energy Collision-Induced Dissociation. Anal. Chem 1993, 65:2824-2834.
    • (1993) Anal. Chem , vol.65 , pp. 2824-2834
    • Tang, X.J.1    Thibault, P.2    Boyd, R.K.3
  • 15
    • 0028501304 scopus 로고
    • Rearrangements of Doubly Charged Acylium Ions from Lysyl and Ornithyl Peptides
    • Tang X.J., Boyd R.K. Rearrangements of Doubly Charged Acylium Ions from Lysyl and Ornithyl Peptides. Rapid Commun. Mass Spectrom 1994, 8:678-686.
    • (1994) Rapid Commun. Mass Spectrom , vol.8 , pp. 678-686
    • Tang, X.J.1    Boyd, R.K.2
  • 17
    • 33747609610 scopus 로고    scopus 로고
    • Scrambling of Sequence Information in Collision-Induced Dissociation of Peptides
    • Harrison A.G., Young A.B., Bleiholder C., Suhai S., Paizs B. Scrambling of Sequence Information in Collision-Induced Dissociation of Peptides. J. Am. Chem. Soc 2006, 128:10364-10365.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 10364-10365
    • Harrison, A.G.1    Young, A.B.2    Bleiholder, C.3    Suhai, S.4    Paizs, B.5
  • 18
    • 33947313512 scopus 로고    scopus 로고
    • Cyclization Reaction of Peptide Fragment Ions during Multistage Collisionally Activated Decomposition: An Inducement to Lose Internal Amino-Acid Residues
    • Jia C., Qi W., He Z. Cyclization Reaction of Peptide Fragment Ions during Multistage Collisionally Activated Decomposition: An Inducement to Lose Internal Amino-Acid Residues. J. Am. Soc. Mass Spectrom 2007, 18:663-678.
    • (2007) J. Am. Soc. Mass Spectrom , vol.18 , pp. 663-678
    • Jia, C.1    Qi, W.2    He, Z.3
  • 20
    • 34248531587 scopus 로고    scopus 로고
    • Infrared Spectroscopy and Theoretical Studies on Gas-Phase Protonated Leu-Enkephalin and Its Fragments: Direct Experimental Evidence for the Mobile Proton
    • Polfer N.C., Oomens J., Suhai S., Paizs B. Infrared Spectroscopy and Theoretical Studies on Gas-Phase Protonated Leu-Enkephalin and Its Fragments: Direct Experimental Evidence for the Mobile Proton. J. Am. Chem. Soc 2007, 129:5887-5897.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 5887-5897
    • Polfer, N.C.1    Oomens, J.2    Suhai, S.3    Paizs, B.4
  • 21
    • 34248161554 scopus 로고    scopus 로고
    • Low Energy Peptide Fragmentations in an ESI-Q-TOF Type Mass Spectrometer
    • Mouls L., Aubagnac J., Martinez J., Enjalbal C. Low Energy Peptide Fragmentations in an ESI-Q-TOF Type Mass Spectrometer. J. Proteome Res 2007, 6:1378-1391.
    • (2007) J. Proteome Res , vol.6 , pp. 1378-1391
    • Mouls, L.1    Aubagnac, J.2    Martinez, J.3    Enjalbal, C.4
  • 25
    • 0041866543 scopus 로고    scopus 로고
    • Elucidation of Fragmentation Mechanisms of Protonated Peptide Ions and their Products: A Case Study on Glycylglycylglycine using Density Functional Theory and Threshold Collision-Induced Dissociation
    • El Aribi H., Rodriquez C.F., Almeida D.R.P., Yun Ling, Mak W.W.-N., Hopkinson A.C., Siu K.W.M. Elucidation of Fragmentation Mechanisms of Protonated Peptide Ions and their Products: A Case Study on Glycylglycylglycine using Density Functional Theory and Threshold Collision-Induced Dissociation. J. Am. Chem. Soc 2003, 125:9229-9238.
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 9229-9238
    • El Aribi, H.1    Rodriquez, C.F.2    Almeida, D.R.P.3    Yun Ling Mak, W.W.-N.4    Hopkinson, A.C.5    Siu, K.W.M.6
  • 27
    • 10044229477 scopus 로고    scopus 로고
    • Fragmentation of Protonated Oligoalanines: Amide Bond Cleavage and Beyond
    • Harrison A.G., Young A.B. Fragmentation of Protonated Oligoalanines: Amide Bond Cleavage and Beyond. J. Am. Soc. Mass Spectrom 2004, 15:1810-1819.
    • (2004) J. Am. Soc. Mass Spectrom , vol.15 , pp. 1810-1819
    • Harrison, A.G.1    Young, A.B.2
  • 28
    • 39849088020 scopus 로고    scopus 로고
    • On the Dynamics of Fragment Isomerization in Collision-Induced Dissociation of Peptides
    • Polfer N.C., Bohrer B.C., Plasencia M.D., Paizs B., Clemmer D.E. On the Dynamics of Fragment Isomerization in Collision-Induced Dissociation of Peptides. J. Phys. Chem. A 2008, 112:1286-1293.
    • (2008) J. Phys. Chem. A , vol.112 , pp. 1286-1293
    • Polfer, N.C.1    Bohrer, B.C.2    Plasencia, M.D.3    Paizs, B.4    Clemmer, D.E.5
  • 29
    • 41049113428 scopus 로고    scopus 로고
    • Evidence for Structural Variants of a- and b-Type Peptide Fragment Ions Using Combined Ion Mobility/Mass Spectrometry
    • Riba I., Giles K., Bateman R.H., Gaskell S.J. Evidence for Structural Variants of a- and b-Type Peptide Fragment Ions Using Combined Ion Mobility/Mass Spectrometry. J. Am. Soc. Mass Spectrom 2008, 19:609-613.
    • (2008) J. Am. Soc. Mass Spectrom , vol.19 , pp. 609-613
    • Riba, I.1    Giles, K.2    Bateman, R.H.3    Gaskell, S.J.4
  • 33
    • 11844296688 scopus 로고    scopus 로고
    • Ion Mobility Spectrometer with Radial Collisional Focusing
    • Guo Y., Wang J., Javahery G., Thomson B.A., Siu K.W.M. Ion Mobility Spectrometer with Radial Collisional Focusing. Anal. Chem 2005, 77:266-275.
    • (2005) Anal. Chem , vol.77 , pp. 266-275
    • Guo, Y.1    Wang, J.2    Javahery, G.3    Thomson, B.A.4    Siu, K.W.M.5
  • 34
    • 26944450527 scopus 로고    scopus 로고
    • Combined Ion-Mobility and Mass-Spectrometry Investigations on Metallothionein Complexes Using a Tandem Mass Spectrometer with a Segmented Second Quadrupole
    • Guo Y., Ling Y., Thomson B.A., Siu K.W.M. Combined Ion-Mobility and Mass-Spectrometry Investigations on Metallothionein Complexes Using a Tandem Mass Spectrometer with a Segmented Second Quadrupole. J. Am. Soc. Mass Spectrom 2005, 16:1787-1794.
    • (2005) J. Am. Soc. Mass Spectrom , vol.16 , pp. 1787-1794
    • Guo, Y.1    Ling, Y.2    Thomson, B.A.3    Siu, K.W.M.4
  • 36
    • 75649089320 scopus 로고    scopus 로고
    • Optimization of Parameters Used in Algorithms of Ion-Mobility Calculation for Conformational Analyses
    • Siu C.K., Guo Y., Saminathan I.S., Hopkinson A.C., Siu K.W.M. Optimization of Parameters Used in Algorithms of Ion-Mobility Calculation for Conformational Analyses. J. Phys. Chem. B 2010, 114:1204-1212.
    • (2010) J. Phys. Chem. B , vol.114 , pp. 1204-1212
    • Siu, C.K.1    Guo, Y.2    Saminathan, I.S.3    Hopkinson, A.C.4    Siu, K.W.M.5
  • 38
    • 0042905854 scopus 로고    scopus 로고
    • Collisional Activation of Peptide Ions in FT-ICR Mass Spectrometry
    • Laskin J., Futrell J.H. Collisional Activation of Peptide Ions in FT-ICR Mass Spectrometry. Mass. Spectrom. Rev 2003, 22:158-181.
    • (2003) Mass. Spectrom. Rev , vol.22 , pp. 158-181
    • Laskin, J.1    Futrell, J.H.2
  • 39
    • 0031010426 scopus 로고    scopus 로고
    • Slow Heating Methods in Tandem Mass Spectrometry
    • McLuckey S.A., Goeringer D.E. Slow Heating Methods in Tandem Mass Spectrometry. J. Mass Spectrom 1997, 32:461-474.
    • (1997) J. Mass Spectrom , vol.32 , pp. 461-474
    • McLuckey, S.A.1    Goeringer, D.E.2
  • 40
    • 70349778763 scopus 로고    scopus 로고
    • Van Stipdonk M. Influence of Size on Apparent Scrambling of Sequence During CID of b-Type Ions
    • Molesworth S., Osburn S., Van Stipdonk M. Influence of Size on Apparent Scrambling of Sequence During CID of b-Type Ions. J. Am. Soc. Mass Spectrom 2009, 20:2174-2181.
    • (2009) J. Am. Soc. Mass Spectrom , vol.20 , pp. 2174-2181
    • Molesworth, S.1    Osburn, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.