메뉴 건너뛰기




Volumn 24, Issue 4, 2005, Pages 508-548

Fragmentation pathways of protonated peptides

Author keywords

Mass spectrometry; Peptide fragmentation; Protonated peptides; Reaction mechanism

Indexed keywords

DISSOCIATION PRODUCTS; PEPTIDE FRAGMENTATION; PEPTIDE FRAGMENTATION PATHWAYS (PFP); PROTONATED PEPTIDES;

EID: 21844457685     PISSN: 02777037     EISSN: None     Source Type: Journal    
DOI: 10.1002/mas.20024     Document Type: Review
Times cited : (963)

References (105)
  • 1
    • 0031026946 scopus 로고    scopus 로고
    • Pathways to immonium ions in the fragmentation of protonated peptides
    • Ambihapathy K, Yalcin T, Leung HW, Harrison AG. 1997. Pathways to immonium ions in the fragmentation of protonated peptides. J Mass Spectrom 32:209-215.
    • (1997) J Mass Spectrom , vol.32 , pp. 209-215
    • Ambihapathy, K.1    Yalcin, T.2    Leung, H.W.3    Harrison, A.G.4
  • 3
    • 0028171241 scopus 로고
    • Charge state specific facile gas-phase cleavage of Asp 75-Met 76 peptide bond in the α-chain of human apohemoglobin probed by electrospray ionization mass spectrometry
    • Bakhtiar R, Wu Q, Hofstadler SA, Smith RD. 1994. Charge state specific facile gas-phase cleavage of Asp 75-Met 76 peptide bond in the α-chain of human apohemoglobin probed by electrospray ionization mass spectrometry. Biol Mass Spectrom 65:707-710.
    • (1994) Biol Mass Spectrom , vol.65 , pp. 707-710
    • Bakhtiar, R.1    Wu, Q.2    Hofstadler, S.A.3    Smith, R.D.4
  • 4
    • 0001481311 scopus 로고
    • Sequential mass spectrometry applied to the study of the formation of "internal" fragment ions of protonated peptides
    • Ballard KD, Gaskell SJ. 1991. Sequential mass spectrometry applied to the study of the formation of "internal" fragment ions of protonated peptides. Int J Mass Spectrom Ion Proc 111:173-189.
    • (1991) Int J Mass Spectrom Ion Proc , vol.111 , pp. 173-189
    • Ballard, K.D.1    Gaskell, S.J.2
  • 7
    • 0023804303 scopus 로고
    • Contributions of mass spectrometry to peptide and protein structure
    • Biemann K. 1988. Contributions of mass spectrometry to peptide and protein structure. Biomed Environ Mass Spectrom 16:99-111.
    • (1988) Biomed Environ Mass Spectrom , vol.16 , pp. 99-111
    • Biemann, K.1
  • 8
    • 0000789037 scopus 로고
    • Influence of cysteine to cysteic acid oxidation on the collision-activated decomposition of protonated peptides: Evidence for intraionic interactions
    • Burlet O, Yang CY, Kaskell SJ. 1992. Influence of cysteine to cysteic acid oxidation on the collision-activated decomposition of protonated peptides: Evidence for intraionic interactions. J Am Soc Mass Spectrom 3:337-344.
    • (1992) J Am Soc Mass Spectrom , vol.3 , pp. 337-344
    • Burlet, O.1    Yang, C.Y.2    Kaskell, S.J.3
  • 9
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching
    • Clauser KR, Baker PR, Burlingame AL. 1999. Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal Chem 71: 2871-2882.
    • (1999) Anal Chem , vol.71 , pp. 2871-2882
    • Clauser, K.R.1    Baker, P.R.2    Burlingame, A.L.3
  • 10
    • 0027618667 scopus 로고
    • The neutral products formed during backbone fragmentations of protonated peptides in tandem mass spectrometry
    • Cordero MM, Houser JJ, Wesdemiotis C. 1993. The neutral products formed during backbone fragmentations of protonated peptides in tandem mass spectrometry. Anal Chem 65:1594-1601.
    • (1993) Anal Chem , vol.65 , pp. 1594-1601
    • Cordero, M.M.1    Houser, J.J.2    Wesdemiotis, C.3
  • 11
    • 0030000913 scopus 로고    scopus 로고
    • Role of the site of protonation in the low-energy decompositions of gas-phase peptide ions
    • Cox KA, Gaskell SJ, Morris M, Whiting A. 1996. Role of the site of protonation in the low-energy decompositions of gas-phase peptide ions. J Am Soc Mass Spectrom 7:522-531.
    • (1996) J Am Soc Mass Spectrom , vol.7 , pp. 522-531
    • Cox, K.A.1    Gaskell, S.J.2    Morris, M.3    Whiting, A.4
  • 12
    • 0034055215 scopus 로고    scopus 로고
    • Proton mobility in protonated peptides: A joint molecular orbital and RRKM study
    • Csonka IP, Paizs B, Lendvay G, Suhai S. 2000. Proton mobility in protonated peptides: A joint molecular orbital and RRKM study. Rapid Commun Mass Spectrom 14:417-431.
    • (2000) Rapid Commun Mass Spectrom , vol.14 , pp. 417-431
    • Csonka, I.P.1    Paizs, B.2    Lendvay, G.3    Suhai, S.4
  • 13
    • 0034859921 scopus 로고    scopus 로고
    • Proton mobility and main fragmentation pathways of protonated lysylglycine
    • Csonka IP, Paizs B, Lendvay G, Suhai S. 2001. Proton mobility and main fragmentation pathways of protonated lysylglycine. Rapid Commun Mass Spectrom 15:1457-1472.
    • (2001) Rapid Commun Mass Spectrom , vol.15 , pp. 1457-1472
    • Csonka, I.P.1    Paizs, B.2    Lendvay, G.3    Suhai, S.4
  • 15
    • 0029810698 scopus 로고    scopus 로고
    • Influence of peptide composition, gas-phase basicity, and chemical modification on frag-mentation efficiency: Evidence for the mobile proton model
    • Dongré AR, Jones JL, Somogyi Á, Wysocki VH. 1996. Influence of peptide composition, gas-phase basicity, and chemical modification on frag-mentation efficiency: Evidence for the mobile proton model. J Am Chem Soc 118:8365-8374.
    • (1996) J Am Chem Soc , vol.118 , pp. 8365-8374
    • Dongré, A.R.1    Jones, J.L.2    Somogyi, Á.3    Wysocki, V.H.4
  • 16
    • 0029915410 scopus 로고    scopus 로고
    • Fragmentation reactions of protonated α-amino acids
    • Dookeran NN, Yalcin T, Harrison AG. 1996. Fragmentation reactions of protonated α-amino acids. J Mass Spectrom 31:500-508.
    • (1996) J Mass Spectrom , vol.31 , pp. 500-508
    • Dookeran, N.N.1    Yalcin, T.2    Harrison, A.G.3
  • 17
    • 0032498145 scopus 로고    scopus 로고
    • Activation of unimolecular reactions by ambient blackbody radiation
    • Dunbar RC, McMahon TB. 1998. Activation of unimolecular reactions by ambient blackbody radiation. Science 279:194-197.
    • (1998) Science , vol.279 , pp. 194-197
    • Dunbar, R.C.1    McMahon, T.B.2
  • 18
    • 0041866543 scopus 로고    scopus 로고
    • Elucidation of fragmentation mechanisms of protonated peptide ions and their products: A case study on Glycylglycylglycine using density functional theory and threshold collision-induced dissociation
    • El Alibi H, Rodriquez CF, Almeida DRP, Ling Y, Mak WWN, Hopkinson AC, Siu KWM. 2003. Elucidation of fragmentation mechanisms of protonated peptide ions and their products: A case study on Glycylglycylglycine using density functional theory and threshold collision-induced dissociation. J Am Chem Soc 125:9229-9236.
    • (2003) J Am Chem Soc , vol.125 , pp. 9229-9236
    • El Alibi, H.1    Rodriquez, C.F.2    Almeida, D.R.P.3    Ling, Y.4    Mak, W.W.N.5    Hopkinson, A.C.6    Siu, K.W.M.7
  • 19
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectra data of peptides with amino acid sequences in a protein database
    • Eng JK, McCormack AL, Yates JR III. 1994. An approach to correlate tandem mass spectra data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5:976-989.
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III, J.R.3
  • 20
    • 0036674027 scopus 로고    scopus 로고
    • Charge state dependent fragmentation of gaseous protein ions in a quadrupole ion trap: Bovine fern-, ferro-, and apo-cytochrome c
    • Engel BJ, Pan P, Reid GE, Wells M, McLuckey SA. 2002. Charge state dependent fragmentation of gaseous protein ions in a quadrupole ion trap: Bovine fern-, ferro-, and apo-cytochrome c. Int J Mass Spectrom 219:171-187.
    • (2002) Int J Mass Spectrom , vol.219 , pp. 171-187
    • Engel, B.J.1    Pan, P.2    Reid, G.E.3    Wells, M.4    McLuckey, S.A.5
  • 22
    • 0035860166 scopus 로고    scopus 로고
    • 2 ions have oxazolone structures? Multistage mass spectrometry and ab initio studies on protonated N-acyl amino acid methyl ester model systems
    • 2 ions have oxazolone structures? Multistage mass spectrometry and ab initio studies on protonated N-acyl amino acid methyl ester model systems. Int J Mass Spectrom 210(211):71-87.
    • (2001) Int J Mass Spectrom , vol.210 , Issue.211 , pp. 71-87
    • Farrugia, J.M.1    O'Hair, R.A.J.2    Reid, G.E.3
  • 23
    • 0035949540 scopus 로고    scopus 로고
    • Side-chain involvement in the fragmentation reactions of the protonated methyl esters of histidine and its peptides
    • Farrugia JM, Taverner T, O'Hair RAJ. 2001. Side-chain involvement in the fragmentation reactions of the protonated methyl esters of histidine and its peptides. Int J Mass Spectrom 209:99-112.
    • (2001) Int J Mass Spectrom , vol.209 , pp. 99-112
    • Farrugia, J.M.1    Taverner, T.2    O'Hair, R.A.J.3
  • 24
    • 0037212299 scopus 로고    scopus 로고
    • Involvement of salt bridges in a novel gas phase rearrangement of protonated arginine-containing dipeptides, which precedes fragmentation
    • Farrugia JM, O'Hair RAJ. 2002. Involvement of salt bridges in a novel gas phase rearrangement of protonated arginine-containing dipeptides, which precedes fragmentation. Int J Mass Spectrom 222:229-242.
    • (2002) Int J Mass Spectrom , vol.222 , pp. 229-242
    • Farrugia, J.M.1    O'Hair, R.A.J.2
  • 25
    • 0024438708 scopus 로고
    • Electrospray ionization for mass-spectrometry of large biomolecules
    • Fenn JB, Mann M, Meng CK, Wong SF, Whitehouse CM. 1989. Electrospray ionization for mass-spectrometry of large biomolecules. Science 246:64-71.
    • (1989) Science , vol.246 , pp. 64-71
    • Fenn, J.B.1    Mann, M.2    Meng, C.K.3    Wong, S.F.4    Whitehouse, C.M.5
  • 27
    • 0034536341 scopus 로고    scopus 로고
    • Selective gas-phase cleavage at the peptide bond C-terminal to aspartic acid in fixed-charge derivatives of Asp-containing peptides
    • Gu C, Tsaprailis G, Breci L, Wysocki VH. 2000. Selective gas-phase cleavage at the peptide bond C-terminal to aspartic acid in fixed-charge derivatives of Asp-containing peptides. Anal Chem 72:5804-5813.
    • (2000) Anal Chem , vol.72 , pp. 5804-5813
    • Gu, C.1    Tsaprailis, G.2    Breci, L.3    Wysocki, V.H.4
  • 28
    • 0033020531 scopus 로고    scopus 로고
    • Linear free energy correlations in mass spectrometry
    • Harrison AG. 1999. Linear free energy correlations in mass spectrometry. J Mass Spectrom 34:577-589.
    • (1999) J Mass Spectrom , vol.34 , pp. 577-589
    • Harrison, A.G.1
  • 29
    • 0036608003 scopus 로고    scopus 로고
    • Fragmentation reactions of protonated peptides containing phenylalanine: A linear free energy correlation in the fragmentation of H-Gly-Xxx-Phe-OH
    • Harrison AG. 2002. Fragmentation reactions of protonated peptides containing phenylalanine: A linear free energy correlation in the fragmentation of H-Gly-Xxx-Phe-OH. Int J Mass Spectrom 217:185-193.
    • (2002) Int J Mass Spectrom , vol.217 , pp. 185-193
    • Harrison, A.G.1
  • 30
    • 0037295406 scopus 로고    scopus 로고
    • Fragmentation reactions of protonated peptides containing glutamine or glutamic acid
    • Harrison AG. 2003. Fragmentation reactions of protonated peptides containing glutamine or glutamic acid. J Mass Spectrom 38:174-187.
    • (2003) J Mass Spectrom , vol.38 , pp. 174-187
    • Harrison, A.G.1
  • 31
  • 32
    • 0034082949 scopus 로고    scopus 로고
    • Reaction competition in the fragmentation of protonated dipeptides
    • Harrison AG, Csizmadia IG, Tang TH, Tu YP. 2000. Reaction competition in the fragmentation of protonated dipeptides. J Mass Spectrom 35: 683-688.
    • (2000) J Mass Spectrom , vol.35 , pp. 683-688
    • Harrison, A.G.1    Csizmadia, I.G.2    Tang, T.H.3    Tu, Y.P.4
  • 33
    • 0027198862 scopus 로고
    • Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
    • Henzel WJ, Billeci TM, Stults JT, Wong SC, Grimley C, Watanabe C. 1993. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci USA 90:5011-5015.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 5011-5015
    • Henzel, W.J.1    Billeci, T.M.2    Stults, J.T.3    Wong, S.C.4    Grimley, C.5    Watanabe, C.6
  • 35
    • 0036684103 scopus 로고    scopus 로고
    • The influence of histidine on cleavage C-terminal to acidic residues in doubly protonated tryptic peptides
    • Huang Y, Wysocki VH, Tabb DL, Yates JR. 2002. The influence of histidine on cleavage C-terminal to acidic residues in doubly protonated tryptic peptides. Int J Mass Spectrom 219:233-244.
    • (2002) Int J Mass Spectrom , vol.219 , pp. 233-244
    • Huang, Y.1    Wysocki, V.H.2    Tabb, D.L.3    Yates, J.R.4
  • 38
    • 0038142335 scopus 로고    scopus 로고
    • Profiling of cyclic hexadepsipeptides Roseotoxins synthesized in vitro and in vivo: A combined tandem mass spectrometry and quantum chemical study
    • Jegorov A, Paizs B, Žabka M, Kuzma M, Giannakopulos AE, Derrick PJ, Havlíček V. 2003. Profiling of cyclic hexadepsipeptides Roseotoxins synthesized in vitro and in vivo: A combined tandem mass spectrometry and quantum chemical study. Eur J Mass Spectrom 9:105-116.
    • (2003) Eur J Mass Spectrom , vol.9 , pp. 105-116
    • Jegorov, A.1    Paizs, B.2    Žabka, M.3    Kuzma, M.4    Giannakopulos, A.E.5    Derrick, P.J.6    Havlíček, V.7
  • 39
  • 41
    • 0001310329 scopus 로고
    • Sequence dependence of peptide fragmentation efficiency curves determined by electrospray ionization/surface-induced dissociation mass spectrometry
    • Jones JL, Dongré AR, Somogyi A, Wysocki VH. 1994. Sequence dependence of peptide fragmentation efficiency curves determined by electrospray ionization/surface-induced dissociation mass spectrometry. J Am Chem Soc 16:8368-8369.
    • (1994) J Am Chem Soc , vol.16 , pp. 8368-8369
    • Jones, J.L.1    Dongré, A.R.2    Somogyi, A.3    Wysocki, V.H.4
  • 43
    • 0035023888 scopus 로고    scopus 로고
    • Gln-Gly cleavage: A dominant dissociation site in the fragmentation of protonated peptides
    • Jonsson AP, Bergman T, Jörnvall H, Griffiths WJ. 2001b. Gln-Gly cleavage: A dominant dissociation site in the fragmentation of protonated peptides. Rapid Commun Mass Spectrom 15:713-720.
    • (2001) Rapid Commun Mass Spectrom , vol.15 , pp. 713-720
    • Jonsson, A.P.1    Bergman, T.2    Jörnvall, H.3    Griffiths, W.J.4
  • 44
    • 0242653718 scopus 로고    scopus 로고
    • Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation
    • Kapp EA, Schütz F, Reid GE, Eddes JS, Moritz RL, O'Hair RAJ, Speed TP, Simpson RJ. 2003. Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation. Anal Chem 75:6251-6264.
    • (2003) Anal Chem , vol.75 , pp. 6251-6264
    • Kapp, E.A.1    Schütz, F.2    Reid, G.E.3    Eddes, J.S.4    Moritz, R.L.5    O'Hair, R.A.J.6    Speed, T.P.7    Simpson, R.J.8
  • 45
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10,000 da
    • Karas M, Hillenkamp F. 1988. Laser desorption ionization of proteins with molecular masses exceeding 10,000 Da. Anal Chem 60:2299-2301.
    • (1988) Anal Chem , vol.60 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 46
    • 0037448091 scopus 로고    scopus 로고
    • Selective cleavage at internal lysine residues in protonated vs. metalated peptides
    • Kish MM, Wesdemiotis C. 2003. Selective cleavage at internal lysine residues in protonated vs. metalated peptides. Int J Mass Spectrom 227:191-203.
    • (2003) Int J Mass Spectrom , vol.227 , pp. 191-203
    • Kish, M.M.1    Wesdemiotis, C.2
  • 47
    • 0030810477 scopus 로고    scopus 로고
    • Collision-induced dissociation threshold energies of protonated glycine, glycinamide, and some related small peptides and peptide amino amides
    • Klassen JS, Kebarle P. 1997. Collision-induced dissociation threshold energies of protonated glycine, glycinamide, and some related small peptides and peptide amino amides. J Am Chem Soc 119:6552-6563.
    • (1997) J Am Chem Soc , vol.119 , pp. 6552-6563
    • Klassen, J.S.1    Kebarle, P.2
  • 48
    • 0034638359 scopus 로고    scopus 로고
    • A comparative study of collision-induced and surface-induced dissociation. 1. Fragmentation of protonated dialanine
    • Laskin J, Denisov E, Futrell J. 2000. A comparative study of collision-induced and surface-induced dissociation. 1. Fragmentation of protonated dialanine. J Am Chem Soc 122:9703-9714.
    • (2000) J Am Chem Soc , vol.122 , pp. 9703-9714
    • Laskin, J.1    Denisov, E.2    Futrell, J.3
  • 49
    • 0033169035 scopus 로고    scopus 로고
    • Relative dissociation energies of protonated peptides by electrospray ionization/surface-induced dissociation
    • Lim H, Schultz DG, Yu C, Hanley L. 1999. Relative dissociation energies of protonated peptides by electrospray ionization/surface-induced dissociation. Anal Chem 71:2307-2317.
    • (1999) Anal Chem , vol.71 , pp. 2307-2317
    • Lim, H.1    Schultz, D.G.2    Yu, C.3    Hanley, L.4
  • 50
    • 0027608882 scopus 로고
    • Use of mass spectrometric molecular weight information to identify proteins in sequence databases
    • Mann M, Hojrup P, Roepstorff P. 1993. Use of mass spectrometric molecular weight information to identify proteins in sequence databases. Biol Mass Spectrom 22:338-345.
    • (1993) Biol Mass Spectrom , vol.22 , pp. 338-345
    • Mann, M.1    Hojrup, P.2    Roepstorff, P.3
  • 51
    • 0028575316 scopus 로고
    • Error-tolerant identification of peptides in sequence databases by peptide sequence tags
    • Mann M, Wilm M. 1994. Error-tolerant identification of peptides in sequence databases by peptide sequence tags. Anal Chem 66:4390-4399.
    • (1994) Anal Chem , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 52
    • 0027918082 scopus 로고
    • Fragmentation of protonated peptides: Surface-induced dissociation in conjunction with a quantum mechanical approach
    • McCormack AL, Somogyi Á, Dongré AR, Wysocki VH. 1993. Fragmentation of protonated peptides: Surface-induced dissociation in conjunction with a quantum mechanical approach. Anal Chem 65:2859-2872.
    • (1993) Anal Chem , vol.65 , pp. 2859-2872
    • McCormack, A.L.1    Somogyi, Á.2    Dongré, A.R.3    Wysocki, V.H.4
  • 54
    • 0141491709 scopus 로고
    • Proton affinities from dissociations of proton-bound dimers
    • McLuckey SA, Cameron D, Cooks RG. 1981. Proton affinities from dissociations of proton-bound dimers. J Am Chem Soc 103:1313-1317.
    • (1981) J Am Chem Soc , vol.103 , pp. 1313-1317
    • McLuckey, S.A.1    Cameron, D.2    Cooks, R.G.3
  • 55
    • 84994913911 scopus 로고
    • A linear free-energy correlation in the lowenergy tandem mass spectra of protonated tripeptides Gly-Gly-Xxx
    • Morgan DO, Bursey MM. 1994. A linear free-energy correlation in the lowenergy tandem mass spectra of protonated tripeptides Gly-Gly-Xxx. Org Mass Spectrom 29:354-359.
    • (1994) Org Mass Spectrom , vol.29 , pp. 354-359
    • Morgan, D.O.1    Bursey, M.M.2
  • 56
    • 0028933873 scopus 로고
    • Linear energy correlations and failures in the low-energy tandem mass spectra of protonated N-benzoylated tripeptides: Tools for probing mechanisms of CAD processes
    • Morgan DG, Bursey MM. 1995. Linear energy correlations and failures in the low-energy tandem mass spectra of protonated N-benzoylated tripeptides: Tools for probing mechanisms of CAD processes. J Mass Spectrom 30:595-600.
    • (1995) J Mass Spectrom , vol.30 , pp. 595-600
    • Morgan, D.G.1    Bursey, M.M.2
  • 57
    • 84987044301 scopus 로고
    • Hygrogen transfer reactions in the formation of "Y + 2" sequence ions from protonated peptides
    • Mueller DR, Eckersley M, Richter W. 1988. Hygrogen transfer reactions in the formation of "Y + 2" sequence ions from protonated peptides. Org Mass Spectrom 23:217-222.
    • (1988) Org Mass Spectrom , vol.23 , pp. 217-222
    • Mueller, D.R.1    Eckersley, M.2    Richter, W.3
  • 58
    • 0033370943 scopus 로고    scopus 로고
    • Proton affinities of the N- And C-terminal segments arising upon the dissociation of the amide bond in protonated peptides
    • Nold MJ, Cerda BA, Wesdemiotis C. 1999. Proton affinities of the N- and C-terminal segments arising upon the dissociation of the amide bond in protonated peptides. J Am Soc Mass Spectrom 10:1-8.
    • (1999) J Am Soc Mass Spectrom , vol.10 , pp. 1-8
    • Nold, M.J.1    Cerda, B.A.2    Wesdemiotis, C.3
  • 59
    • 0000197230 scopus 로고    scopus 로고
    • Amide bond dissociation in protonated peptides. Structures of the N-terminal ionic and neutral fragments
    • Nold MJ, Wesdemiotis C, Yalcin T, Harrison AG. 1997. Amide bond dissociation in protonated peptides. Structures of the N-terminal ionic and neutral fragments. Int J Mass Spectrom Ion Process 164:137-153.
    • (1997) Int J Mass Spectrom Ion Process , vol.164 , pp. 137-153
    • Nold, M.J.1    Wesdemiotis, C.2    Yalcin, T.3    Harrison, A.G.4
  • 60
    • 0034506736 scopus 로고    scopus 로고
    • The role pf nucleophile-electrophile interactions in the unimolecular and bimolecular gas-phase ion chemistry of peptides and related systems
    • O'Hair RA. 2000. The role pf nucleophile-electrophile interactions in the unimolecular and bimolecular gas-phase ion chemistry of peptides and related systems. J Mass Spectrom 35:1377-1381.
    • (2000) J Mass Spectrom , vol.35 , pp. 1377-1381
    • O'Hair, R.A.1
  • 61
    • 0000196411 scopus 로고    scopus 로고
    • Neighboring group versus cis-elimination mechanisms for side chain loss from protonated methionine, methionine sulfoxide, and their peptides
    • O'Hair RA, Reid GE. 1999. Neighboring group versus cis-elimination mechanisms for side chain loss from protonated methionine, methionine sulfoxide, and their peptides. Eur Mass Spectrom 5:325-334.
    • (1999) Eur Mass Spectrom , vol.5 , pp. 325-334
    • O'Hair, R.A.1    Reid, G.E.2
  • 62
    • 0345357001 scopus 로고    scopus 로고
    • Experimental and theoretical investigation of the main fragmentation pathways of protonated H-Gly-Gly-Sar-OH and H-Gly-Sar-Sar-OH
    • Paizs B, Suhai S, Harrison AG. 2003. Experimental and theoretical investigation of the main fragmentation pathways of protonated H-Gly-Gly-Sar-OH and H-Gly-Sar-Sar-OH. J Am Soc Mass Spectrom 14:1454-1469.
    • (2003) J Am Soc Mass Spectrom , vol.14 , pp. 1454-1469
    • Paizs, B.1    Suhai, S.2    Harrison, A.G.3
  • 63
    • 0035029537 scopus 로고    scopus 로고
    • Theoretical study of the main fragmentation pathways for protonated glycylglycine
    • Paizs B, Suhai S. 2001a, Theoretical study of the main fragmentation pathways for protonated glycylglycine. Rapid Commun Mass Spectrom 15:651-663.
    • (2001) Rapid Commun Mass Spectrom , vol.15 , pp. 651-663
    • Paizs, B.1    Suhai, S.2
  • 64
    • 0035207298 scopus 로고    scopus 로고
    • Combined quantum chemical and RRKM modeling of the main fragmentation pathways of protonated GGG. I. Cis-trans isomerization around protonated amide bonds
    • Paizs B, Suhai S. 2001b. Combined quantum chemical and RRKM modeling of the main fragmentation pathways of protonated GGG. I. Cis-trans isomerization around protonated amide bonds. Rapid Commun Mass Spectrom 15:2307-2323.
    • (2001) Rapid Commun Mass Spectrom , vol.15 , pp. 2307-2323
    • Paizs, B.1    Suhai, S.2
  • 65
    • 0036008565 scopus 로고    scopus 로고
    • Combined quantum chemical and RRKM modeling of the main fragmentation pathways of protonated GGG. II. Formation of b(2), y(1), and y(2) ions
    • Paizs B, Suhai S. 2002a. Combined quantum chemical and RRKM modeling of the main fragmentation pathways of protonated GGG. II. Formation of b(2), y(1), and y(2) ions. Rapid Commun Mass Spectrom 16:375-389.
    • (2002) Rapid Commun Mass Spectrom , vol.16 , pp. 375-389
    • Paizs, B.1    Suhai, S.2
  • 66
    • 0036023990 scopus 로고    scopus 로고
    • Towards understanding some ion intensity relationships for the tandem mass spectra of protonated peptides
    • Paizs B, Suhai S. 2002b. Towards understanding some ion intensity relationships for the tandem mass spectra of protonated peptides. Rapid Commun Mass Spectrom 16:1699-1702.
    • (2002) Rapid Commun Mass Spectrom , vol.16 , pp. 1699-1702
    • Paizs, B.1    Suhai, S.2
  • 67
    • 0345862097 scopus 로고    scopus 로고
    • Towards understanding the tandem mass spectra of protonated oligopeptides. 1: Mechanism of amide bond cleavage
    • Paizs B, Suhai S. 2004. Towards understanding the tandem mass spectra of protonated oligopeptides. 1: Mechanism of amide bond cleavage. J Am Soc Mass Spectrom 15:103-112.
    • (2004) J Am Soc Mass Spectrom , vol.15 , pp. 103-112
    • Paizs, B.1    Suhai, S.2
  • 68
    • 0033060734 scopus 로고    scopus 로고
    • Formation of b(2)(+) ions from protonated peptides: An ab initio study
    • Paizs B, Lendvay G, Vékey K, Suhai S. 1999. Formation of b(2)(+) ions from protonated peptides: An ab initio study. Rapid Commun Mass Spectrom 13:525-533.
    • (1999) Rapid Commun Mass Spectrom , vol.13 , pp. 525-533
    • Paizs, B.1    Lendvay, G.2    Vékey, K.3    Suhai, S.4
  • 70
    • 0035029536 scopus 로고    scopus 로고
    • Proton mobility in protonated glycylglycine and N- formylglycylglycinamide: A combined quantum chemical and RRKM study
    • Paizs B, Csonka IP, Lendvay G, Suhai S. 2001. Proton mobility in protonated glycylglycine and N-formylglycylglycinamide: A combined quantum chemical and RRKM study. Rapid Commun Mass Spectrom 15:637-650.
    • (2001) Rapid Commun Mass Spectrom , vol.15 , pp. 637-650
    • Paizs, B.1    Csonka, I.P.2    Lendvay, G.3    Suhai, S.4
  • 73
    • 0842285056 scopus 로고
    • The interpretation of collision induced dissociation tandem mass spectra of peptides
    • Papayannopoulos IA. 1995. The interpretation of collision induced dissociation tandem mass spectra of peptides. Mass Spectrom Rev 14:49-73.
    • (1995) Mass Spectrom Rev , vol.14 , pp. 49-73
    • Papayannopoulos, I.A.1
  • 74
    • 12944269065 scopus 로고
    • Rapid identification of proteins by peptide-mass fingerprinting
    • Pappin DJC, Hojrup P, Bleasby AJ. 1993. Rapid identification of proteins by peptide-mass fingerprinting. J Cur Biol 3:327-332.
    • (1993) J Cur Biol , vol.3 , pp. 327-332
    • Pappin, D.J.C.1    Hojrup, P.2    Bleasby, A.J.3
  • 75
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJC, Creasy DM, Cottrell JS. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 76
    • 0034516862 scopus 로고    scopus 로고
    • Dissociation of the peptide bond in protonated peptides
    • Polce MJ, Ren D, Wesdemiotis C. 2000. Dissociation of the peptide bond in protonated peptides. J Mass Spectrom 35:1391-1398.
    • (2000) J Mass Spectrom , vol.35 , pp. 1391-1398
    • Polce, M.J.1    Ren, D.2    Wesdemiotis, C.3
  • 77
    • 0029988666 scopus 로고    scopus 로고
    • Tandem mass spectrometry of large biomolecule ions by blackbody infrared radiative dissociation
    • Price WD, Schnier PD, Williams ER. 1996. Tandem mass spectrometry of large biomolecule ions by blackbody infrared radiative dissociation. Anal Chem 68:859-866.
    • (1996) Anal Chem , vol.68 , pp. 859-866
    • Price, W.D.1    Schnier, P.D.2    Williams, E.R.3
  • 78
    • 0029822349 scopus 로고    scopus 로고
    • Unimolecular Reaction kinetics in the high-pressure limit without collisions
    • Price WD, Schnier PD, Jockush RA, Williams ER. 1996. Unimolecular Reaction kinetics in the high-pressure limit without collisions. J Am Chem Soc 118:10640-10644.
    • (1996) J Am Chem Soc , vol.118 , pp. 10640-10644
    • Price, W.D.1    Schnier, P.D.2    Jockush, R.A.3    Williams, E.R.4
  • 79
    • 4644314911 scopus 로고
    • Preferential fragmentation of protonated gas-phase peptide ions adjacent to acidic amino acid residues
    • Qin J, Chait BT. 1995. Preferential fragmentation of protonated gas-phase peptide ions adjacent to acidic amino acid residues. J Am Chem Soc 117:5411-5412.
    • (1995) J Am Chem Soc , vol.117 , pp. 5411-5412
    • Qin, J.1    Chait, B.T.2
  • 81
    • 0001113587 scopus 로고    scopus 로고
    • Probing the fragmentation reactions of protonated glycine oligomers via multistage mass spectrometry and gas phase ion molecule hydrogen/deuterium exchange
    • Reid GE, Simpson RJ, O'Hair RAJ. 1999. Probing the fragmentation reactions of protonated glycine oligomers via multistage mass spectrometry and gas phase ion molecule hydrogen/deuterium exchange. Int J Mass Spectrom 190/191:209-230.
    • (1999) Int J Mass Spectrom , vol.190-191 , pp. 209-230
    • Reid, G.E.1    Simpson, R.J.2    O'Hair, R.A.J.3
  • 82
    • 0034582658 scopus 로고    scopus 로고
    • Leaving group and gas phase neighboring group effects in the side chain losses from protonated serine and its derivatives
    • Reid GE, Simpson RJ, O'Hair RAJ. 2000. Leaving group and gas phase neighboring group effects in the side chain losses from protonated serine and its derivatives. J Am Soc Mass Spectrom 11:1047-1060.
    • (2000) J Am Soc Mass Spectrom , vol.11 , pp. 1047-1060
    • Reid, G.E.1    Simpson, R.J.2    O'Hair, R.A.J.3
  • 83
    • 84987419408 scopus 로고
    • Proposal for a common nomenclature for sequence ions in mass spectra of peptides
    • Roepstorff P, Fohlmann J. 1984. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 11:601.
    • (1984) Biomed Mass Spectrom , vol.11 , pp. 601
    • Roepstorff, P.1    Fohlmann, J.2
  • 84
    • 0029768104 scopus 로고    scopus 로고
    • Blackbody infrared radiative dissociation of bradykinin and its analogues: Energetics, dynamics, and evidence for sat-bridge structures in the gas phase
    • Schnier PD, Price WD, Jockusch RA, Strittmatter EF, Williams ER. 1996. Blackbody infrared radiative dissociation of bradykinin and its analogues: Energetics, dynamics, and evidence for sat-bridge structures in the gas phase. J Am Chem Soc 118:7178-7189.
    • (1996) J Am Chem Soc , vol.118 , pp. 7178-7189
    • Schnier, P.D.1    Price, W.D.2    Jockusch, R.A.3    Strittmatter, E.F.4    Williams, E.R.5
  • 86
    • 0026816653 scopus 로고
    • Some proline substituent effect in the tandem mass spectrum of protonated pentaalainine
    • Schwartz BL, Bursey MM. 1992. Some proline substituent effect in the tandem mass spectrum of protonated pentaalainine. Biol Mass Spectrom 21:92-96.
    • (1992) Biol Mass Spectrom , vol.21 , pp. 92-96
    • Schwartz, B.L.1    Bursey, M.M.2
  • 87
    • 0001595008 scopus 로고
    • The effect of preotonation site on bond strengths in simple peptides: Application of ab initio and modified neglect of differential overlap bond orders and modified neglect of differential overlap energy partitioning
    • Somogyi A, Wysocki VH, Mayer I. 1994. The effect of preotonation site on bond strengths in simple peptides: Application of ab initio and modified neglect of differential overlap bond orders and modified neglect of differential overlap energy partitioning. J Am Soc Mass Spectrom 5:704-717.
    • (1994) J Am Soc Mass Spectrom , vol.5 , pp. 704-717
    • Somogyi, A.1    Wysocki, V.H.2    Mayer, I.3
  • 88
    • 0031032285 scopus 로고    scopus 로고
    • The promotion of d-type ions during the low-energy collision-induced dissociation of some cysteic acid-containing peptides
    • Summerfield SG, Cox KA, Gaskell SJ. 1997. The promotion of d-type ions during the low-energy collision-induced dissociation of some cysteic acid-containing peptides. J Am Soc Mass Spectrom 8:25-31.
    • (1997) J Am Soc Mass Spectrom , vol.8 , pp. 25-31
    • Summerfield, S.G.1    Cox, K.A.2    Gaskell, S.J.3
  • 90
    • 0037353846 scopus 로고    scopus 로고
    • Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides
    • Tabb DL, Smith LL, Breci LA, Wysocki VH, Lin D, Yates JR. 2003. Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides. Anal Chem 75:1155-1163.
    • (2003) Anal Chem , vol.75 , pp. 1155-1163
    • Tabb, D.L.1    Smith, L.L.2    Breci, L.A.3    Wysocki, V.H.4    Lin, D.5    Yates, J.R.6
  • 91
    • 0027918107 scopus 로고
    • Fragmentation reactions of multiplyprotonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation
    • Tang X, Thibault P, Boyd RK. 1993. Fragmentation reactions of multiplyprotonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation. Anal Chem 65:2824-2834.
    • (1993) Anal Chem , vol.65 , pp. 2824-2834
    • Tang, X.1    Thibault, P.2    Boyd, R.K.3
  • 92
    • 0026952628 scopus 로고
    • An investigation of fragmentation mechanisms of doubly protonated tryptic peptides
    • Tang X, Boyd RK. 1992. An investigation of fragmentation mechanisms of doubly protonated tryptic peptides. Rapid Commun Mass Spectrom 6:651-657.
    • (1992) Rapid Commun Mass Spectrom , vol.6 , pp. 651-657
    • Tang, X.1    Boyd, R.K.2
  • 93
    • 0035356977 scopus 로고    scopus 로고
    • Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry
    • Taylor JA, Johnson RS. 2001. Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry. Anal Chem 73: 2594-2604.
    • (2001) Anal Chem , vol.73 , pp. 2594-2604
    • Taylor, J.A.1    Johnson, R.S.2
  • 94
    • 0017309508 scopus 로고
    • Chemical ionization of amino acids
    • Tsang CW, Harrison AG. 1976. Chemical ionization of amino acids. J Am Chem Soc 98:1301-1308.
    • (1976) J Am Chem Soc , vol.98 , pp. 1301-1308
    • Tsang, C.W.1    Harrison, A.G.2
  • 96
    • 0032231991 scopus 로고    scopus 로고
    • Origin of product ions in the MS/MS spectra of peptides in a quadrupole ion trap
    • Vachet RW, Ray KL, Glish GL. 1998. Origin of product ions in the MS/MS spectra of peptides in a quadrupole ion trap. J Am Soc Mass Spectrom 9:341-344.
    • (1998) J Am Soc Mass Spectrom , vol.9 , pp. 341-344
    • Vachet, R.W.1    Ray, K.L.2    Glish, G.L.3
  • 97
    • 0029823591 scopus 로고    scopus 로고
    • Probing the proline effect in CID of protonated peptides
    • Vaisar T, Urban J. 1996. Probing the proline effect in CID of protonated peptides. J Mass Spectrom 31:1185-1187.
    • (1996) J Mass Spectrom , vol.31 , pp. 1185-1187
    • Vaisar, T.1    Urban, J.2
  • 98
    • 0031837553 scopus 로고    scopus 로고
    • Gas-phase fragmentation of protonated mono-N-methylated peptides. Analogy with solution-phase acid-catalyzed hydrolysis
    • Vaisar T, Urban J. 1998. Gas-phase fragmentation of protonated mono-N-methylated peptides. Analogy with solution-phase acid-catalyzed hydrolysis. J Mass Spectrom 33:505-524.
    • (1998) J Mass Spectrom , vol.33 , pp. 505-524
    • Vaisar, T.1    Urban, J.2
  • 100
    • 0034501099 scopus 로고    scopus 로고
    • Mobile and localized protons: A framework for understanding peptide dissociation
    • Wysocki VH, Tsaprailis G, Smith LL, Breci LA. 2000. Mobile and localized protons: A framework for understanding peptide dissociation. J Mass Spectrom 35:1399-1406.
    • (2000) J Mass Spectrom , vol.35 , pp. 1399-1406
    • Wysocki, V.H.1    Tsaprailis, G.2    Smith, L.L.3    Breci, L.A.4
  • 101
    • 0029805733 scopus 로고    scopus 로고
    • Ion chemistry of protonated lysine derivatives
    • Yalcin T, Harrison AG. 1996. Ion chemistry of protonated lysine derivatives. J Mass Spectrom 31:1237-1243.
    • (1996) J Mass Spectrom , vol.31 , pp. 1237-1243
    • Yalcin, T.1    Harrison, A.G.2
  • 104
    • 0027375364 scopus 로고
    • Peptide mass maps: A highly informative approach to protein identification
    • Yates JR III, Speicher S, Griffin PR, Hunkapiller T. 1993. Peptide mass maps: A highly informative approach to protein identification. Anal Biochem 214:397-408.
    • (1993) Anal Biochem , vol.214 , pp. 397-408
    • Yates III, J.R.1    Speicher, S.2    Griffin, P.R.3    Hunkapiller, T.4
  • 105
    • 0027692925 scopus 로고
    • Identification of the facile gas-phase cleavage of the Asp-Pro and Asp-Xxx peptide bonds in matrix assisted laser desorption time-of-flight mass spectrometry
    • Yu W, Vath JE, Huberty MC, Martin SA. 1993. Identification of the facile gas-phase cleavage of the Asp-Pro and Asp-Xxx peptide bonds in matrix assisted laser desorption time-of-flight mass spectrometry. Anal Chem 65:3015-3023.
    • (1993) Anal Chem , vol.65 , pp. 3015-3023
    • Yu, W.1    Vath, J.E.2    Huberty, M.C.3    Martin, S.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.