Comparative lipidomic profiling of xylose-metabolizing S. cerevisiae and its parental strain in different media reveals correlations between membrane lipids and fermentation capacity

Biotechnology and Bioengineering

Volumn 108, Issue 1, 2011, Pages 12-21

  Xia, Jinmei ^a   Jones, A Daniel ^b,c   Lau, Ming W ^d   Yuan, Ying Jin ^a   Dale, Bruce E ^b,d   Balan, Venkatesh ^b,d  

^a TIANJIN UNIVERSITY   (China)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c Michigan State University   (United States)

^d Michigan State University   (United States)

Author keywords

AFEX; Cellulosic ethanol; LC MS MS; Lipidome analysis; Xylose; Yeast

Indexed keywords

AFEX; AMMONIA FIBERS; AVAILABLE NUTRIENTS; CORN STOVER; FERMENTATION CAPACITY; LC-MS/MS; LIPIDOMES; LIPIDOMICS; MEDIA COMPOSITION; MEMBRANE LIPIDS; PARENTAL STRAINS; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; S.CEREVISIAE; SACCHAROMYCES CEREVISIAE; STATIONARY PHASE; ULTRA PERFORMANCE LIQUID CHROMATOGRAPHY; UTILIZATION RATES; XYLOSE-FERMENTING YEASTS; YEAST EXTRACTS; YEAST NITROGEN BASE;

CELL MEMBRANES; CELLULOSIC ETHANOL; CYTOLOGY; ETHANOL; FERMENTATION; GLUCOSE; GROWTH KINETICS; LIQUID CHROMATOGRAPHY; PHOSPHOLIPIDS; YEAST;

PRINCIPAL COMPONENT ANALYSIS;

AMMONIA; GLUCOSE; MEMBRANE LIPID; NITROGEN; PEPTONE; PHOSPHATIDYLINOSITOL; PHOSPHATIDYLSERINE; XYLOSE;

ARTICLE; CELL GROWTH; CORN; FERMENTATION; FUNGAL STRAIN; LIPIDOMICS; NONHUMAN; NUTRIENT; PRINCIPAL COMPONENT ANALYSIS; SACCHAROMYCES CEREVISIAE; SYNTHESIS; ULTRA PERFORMANCE LIQUID CHROMATOGRAPHY; YEAST;

CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CULTURE MEDIA; FERMENTATION; MEMBRANE LIPIDS; PHOSPHOLIPIDS; SACCHAROMYCES CEREVISIAE; XYLOSE;

SACCHAROMYCES CEREVISIAE; ZEA MAYS;

EID: 78649397977     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.22910     Document Type: Article

References (40)

1. Albers E, Larsson C, Andlid T, Walsh MC, Gustafsson L. 2007. Effect of nutrient starvation on the cellular composition and metabolic capacity of Saccharomyces cerevisiae. Appl Environ Microbiol 73(15): 4839-4848.
2. Anslyn EV, Shear JB. 2002. Stochastic sensing of IP3 has far-reaching consequences. Chem Biol 9(7): 779-780.
3. Atkinson K, Fogel S, Henry SA. 1980. Yeast mutant defective in phosphatidylserine synthesis. J Biol Chem 255(14): 6653-6661.
4. Becker GW, Lester RL. 1977. Changes in phospholipids of Saccharomyces cerevisiae associated with inositol-less death. J Biol Chem 252(23): 8684-8691.
5. Birner R, Burgermeister M, Schneiter R, Daum G. 2001. Roles of phosphatidylethanolamine and of its several biosynthetic pathways in Saccharomyces cerevisiae. Mol Biol Cell 12(4): 997-1007.
6. Bligh EG, Dyer WJ. 1959. A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37(8): 911-917.
7. Carman GM, Henry SA. 1999. Phospholipid biosynthesis in the yeast Saccharomyces cerevisiae and interrelationship with other metabolic processes. Prog Lipid Res 38(5-6): 361-399.
8. Carpenter CL, Cantley LC. 1996. Phosphoinositide kinases. Curr Opin Cell Biol 8(2): 153-158.
9. Cullis PR, Dekruijff B. 1979. Lipid polymorphism and the functional roles of lipids in biological-membranes. Biochim Biophys Acta 559(4): 399-420.
10. Dennis EA. 2009. Lipidomics joins the omics evolution. Proc Natl Acad Sci USA 106(7): 2089-2090.
11. Ding DB, Greenberg ML. 2003. Lithium and valproate decrease the membrane phosphatidylinositol/phosphatidylcholine ratio. Mol Microbiol 47(2): 373-381.
12. Gardocki ME, Jani N, Lopes JM. 2005. Phosphatidylinositol biosynthesis: Biochemistry and regulation. Biochim Biophys Acta 1735(2): 89-100.
13. Gaspar ML, Aregullin MA, Jesch SA, Nunez LR, Villa-Garcia M, Henry SA. 2007. The emergence of yeast lipidomics. Biochim Biophys Acta 1771(3): 241-254.
14. Hahn-Hagerdal B, Karhumaa K, Fonseca C, Spencer-Martins I, Gorwa-Grauslund MF. 2007. Towards industrial pentose-fermenting yeast strains. Appl Microbiol Biotechnol 74(5): 937-953.
15. Han XL, Gross RW. 2003. Global analyses of cellular lipidomes directly from crude extracts of biological samples by ESI mass spectrometry: A bridge to lipidomics. J Lipid Res 44(6): 1071-1079.
16. Hill J, Nelson E, Tilman D, Polasky S, Tiffany D. 2006. Environmental, economic, and energetic costs and benefits of biodiesel and ethanol biofuels. Proc Natl Acad Sci USA 103(30): 11206-11210.
17. Hosono K. 1992. Effect of salt stress on lipid-composition and membrane fluidity of the salt-tolerant yeast Zygosaccharomyces rouxii. J Gen Microbiol 138:91-96.
18. Jackson M, Crick DC, Brennan PJ. 2000. Phosphatidylinositol is an essential phospholipid of mycobacteria. J Biol Chem 275(39): 30092-30099.
19. Janssen M, Koorengevel MC, de Kruijff B, de Kroon A. 2000. The phosphatidylcholine to phosphatidylethanolamine ratio of Saccharomyces cerevisiae varies with the growth phase. Yeast 16(7): 641-650.
20. Keating JD, Panganiban C, Mansfield SD. 2006. Tolerance and adaptation of ethanologenic yeasts to lignocellulosic inhibitory compounds. Biotechnol Bioeng 93(6): 1196-1206.
21. Kennedy DC, Lyn RK, Pezacki JP. 2009. Cellular lipid metabolism is influenced by the coordination environment of copper. J Am Chem Soc 131(7): 2444-2445.
22. Klinke HB, Thomsen AB, Ahring BK. 2004. Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass. Appl Microbiol Biotechnol 66(1): 10-26.
23. Kraft ML, Moore JS. 2003. n-Alkyl fatty acid-modified microgels: Ion permeation as a function of chain length. Langmuir 19(3): 910-915.
24. Lau MW, Dale BE. 2009. Cellulosic ethanol production from AFEX-treated corn stover using Saccharomyces cerevisiae 424A(LNH-ST). Proc Natl Acad Sci USA 106(5): 1368-1373.
25. Lau MW, Dale BE, Balan V. 2008. Ethanolic fermentation of hydrolysates from ammonia fiber expansion (AFEX) treated corn stover and distillers grain without detoxification and external nutrient supplementation. Biotechnol Bioeng 99(3): 529-539.
26. Leandro MJ, Fonseca C, Goncalves P. 2009. Hexose and pentose transport in ascomycetous yeasts: An overview. FEMS Yeast Res 9(4): 511-525.
27. Lee J, Jung SH, Lowe S, Zeikus JG, Hollingsworth RI. 1998. A dynamically regulated transformation of a bacterial bilayer membrane to a cross-linked 2-dimensional sheet during adaptation to unfavorable environmental pressures. J Am Chem Soc 120(24): 5855-5863.
28. Liscovitch M, Czarny M, Fiucci G, Tang XQ. 2000. Phospholipase D: Molecular and cell biology of a novel gene family. Biochem J 345:401-415.
29. Matsuo Y, Fisher E, Patton-Vogt J, Marcus S. 2007. Functional characterization of the fission yeast phosphatidylserine synthase gene, pps1, reveals novel cellular functions for phosphatidylserine. Eukaryot Cell 6(11): 2092-2101.
30. Meinander N, Zacchi G, HahnHagerdal B. 1996. A heterologous reductase affects the redox balance of recombinant Saccharomyces cerevisiae. Microbiology 142:165-172.
31. Nealon JR, Blanksby SJ, Mitchell TW, Else PL. 2008. Systematic differences in membrane acyl composition associated with varying body mass in mammals occur in all phospholipid classes: An analysis of kidney and brain. J Exp Biol 211(19): 3195-3204.
32. Palmqvist E, HahnHagerdal B, Galbe M, Zacchi G. 1996. The effect of water-soluble inhibitors from steam-pretreated willow on enzymatic hydrolysis and ethanol fermentation. Enzyme Microb Technol 19(6): 470-476.
33. Russell NJ, Evans RI, terSteeg PF, Hellemons J, Verheul A, Abee T. 1995. Membranes as a target for stress adaptation. Int J Food Microbiol 28(2): 255-261.
34. Sedlak M, Ho NWY. 2004. Production of ethanol from cellulosic biomass hydrolysates using genetically engineered Saccharomyces yeast capable of cofermenting glucose and xylose. Appl Biochem Biotechnol 114(1/3): 403-416.
35. Teymouri F, Laureano-Perez L, Alizadeh H, Dale BE. 2004. Ammonia fiber explosion treatment of corn stover. Appl Biochem Biotechnol 113:951-963.
36. Turk M, Mejanelle L, Sentjurc M, Grimalt JO, Gunde-Cimerman N, Plemenitas A. 2004. Salt-induced changes in lipid composition and membrane fluidity of halophilic yeast-like melanized fungi. Extremophiles 8(1): 53-61.
37. Voelker DR. 1997. Phosphatidylserine decarboxylase. Biochim Biophys Acta 1348(1-2): 236-244.
38. Watson AD. 2006. Lipidomics: A global approach to lipid analysis in biological systems. J Lipid Res 47(10): 2101-2111.
39. Xia J-M, Yuan Y-J. 2009. Comparative lipidomics of four strains of Saccharomyces cerevisiae reveals different responses to furfural, phenol, and acetic acid. J Agric Food Chem 57(1): 99-108.
40. Xia JM, Wu XJ, Yuan YJ. 2007. Integration of wavelet transform with PCA and ANN for metabolomics data-mining. Metabolomics 3:531-537.