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Volumn 9, Issue 4, 2010, Pages 459-468

Advances in genomic DNA methylation analysis

Author keywords

5 Methylcytosine; DNA methylation; Methylation sensitive enzymes; PCR; Sodium bisulphite

Indexed keywords

ALKYLATION; DNA; ENZYMES; GENES; METHYLATION;

EID: 78649396093     PISSN: 1682296X     EISSN: 16822978     Source Type: Journal    
DOI: 10.3923/biotech.2010.459.468     Document Type: Article
Times cited : (10)

References (88)
  • 1
    • 0021380676 scopus 로고
    • Estimation of the amount of 5 methylcytosine in Drosophila melanogaster DNA by amplified ELISA and photoacoustic spectroscopy
    • Achwal, C. W., C. A. Iyer and H. S. Chandra, 1984. Estimation of the amount of 5 methylcytosine in Drosophila melanogaster DNA by amplified ELISA and photoacoustic spectroscopy. EMBO J., 3:263-266.
    • (1984) EMBO J. , vol.3 , pp. 263-266
    • Achwal, C.W.1    Iyer, C.A.2    Chandra, H.S.3
  • 3
    • 42649089780 scopus 로고    scopus 로고
    • The methylome: Approaches for global DNA methylation profiling
    • Beck, S. and V. K. Rakyan, 2008. The methylome: Approaches for global DNA methylation profiling. Trends. Genet., 24:231-237.
    • (2008) Trends. Genet. , vol.24 , pp. 231-237
    • Beck, S.1    Rakyan, V.K.2
  • 4
    • 0026077093 scopus 로고
    • Amplification of nucleic acids by polymerase chain reaction (PCR) and other methods and their applications
    • Bej, A. K., M. H. Mahbubani and R. M. Atlas, 1991. Amplification of nucleic acids by Polymerase Chain Reaction (PCR) and other methods and their applications. Crit. Rev. Biochem. Mol. Biol., 26:301-334.
    • (1991) Crit. Rev. Biochem. Mol. Biol. , vol.26 , pp. 301-334
    • Bej, A.K.1    Mahbubani, M.H.2    Atlas, R.M.3
  • 5
    • 0017841507 scopus 로고
    • Use of restriction enzymes to study eukaryotic DNA methylation
    • Bird, A. P. and E. M. Southern, 1978. Use of restriction enzymes to study eukaryotic DNA methylation. J. Mol. Biol., 118:27-47.
    • (1978) J. Mol. Biol. , vol.118 , pp. 27-47
    • Bird, A.P.1    Southern, E.M.2
  • 6
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird, A., 2002. DNA methylation Patterns and epigenetic memory. Genes Dev., 16:6-21.
    • (2002) Genes Dev. , vol.16 , pp. 6-21
    • Bird, A.1
  • 7
    • 0035473989 scopus 로고    scopus 로고
    • Forty years of decoding the silence in X-chromosome inactivation
    • Boumil, R. M. and J. T. Lee, 2001. Forty years of decoding the silence in X-chromosome inactivation. Hum. Mol. Genet, 10:2225-2232.
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 2225-2232
    • Boumil, R.M.1    Lee, J.T.2
  • 8
    • 34548841127 scopus 로고    scopus 로고
    • Ageing: From stem to stern
    • Brunet, A. and T. A. Rando, 2007. Ageing: From stem to stern. Nature, 449:288-291.
    • (2007) Nature , vol.449 , pp. 288-291
    • Brunet, A.1    Rando, T.A.2
  • 9
    • 0020057303 scopus 로고
    • Separation of major and minor deoxyribonucleoside monophosphates by reversephase high-performance liquid chromatography: A simple method applicable to quantitation of methylated nucleotides in DNA
    • Christman, J. K., 1982. Separation of major and minor deoxyribonucleoside monophosphates by reversephase high-performance liquid chromatography: A simple method applicable to quantitation of methylated nucleotides in DNA. Anal. Biochem., 119:38-48.
    • (1982) Anal. Biochem. , vol.119 , pp. 38-48
    • Christman, J.K.1
  • 11
    • 50549207126 scopus 로고
    • The effect of calcium sulfate as the binder in in DEAE-cellulose thin layer chromatography for separating nucleic degredation products
    • Coffey, R. G. and R. W. Newburgh, 1963. The effect of calcium sulfate as the binder in in DEAE-cellulose thin layer chromatography for separating nucleic degredation products. J. Chromatog., 11:376-382.
    • (1963) J. Chromatog. , vol.11 , pp. 376-382
    • Coffey, R.G.1    Newburgh, R.W.2
  • 12
    • 0038678777 scopus 로고    scopus 로고
    • Sensitive and quantitative universal pyrosequencing methylation analysis of CpG sites
    • Colella, S., L. Shen, K. A. Baggerly, J. P. Issa and R. Krahe, 2003. Sensitive and quantitative universal pyrosequencing methylation analysis of CpG sites. Biotechniques, 35:146-150.
    • (2003) Biotechniques , vol.35 , pp. 146-150
    • Colella, S.1    Shen, L.2    Baggerly, K.A.3    Issa, J.P.4    Krahe, R.5
  • 13
    • 0343621494 scopus 로고    scopus 로고
    • Aberrant CpG-island methylation has non-random and tumour-typespecific patterns
    • Costello, J. F., M. C. Fruhwald, D. J. Smiraglia, L. J. Rush and G. P. Robertson, 2000. Aberrant CpG-island methylation has non-random and tumour-typespecific patterns. Nat Genet., 24:132-138.
    • (2000) Nat. Genet. , vol.24 , pp. 132-138
    • Costello, J.F.1    Fruhwald, M.C.2    Smiraglia, D.J.3    Rush, L.J.4    Robertson, G.P.5
  • 15
    • 0037314263 scopus 로고    scopus 로고
    • DHPLC-based method for DNA methylation analysis of differential methylated regions from imprinted genes
    • Couvert, P., K. Poirier, A. Carrie, C. Chalas and P. Jouannet et al, 2003. DHPLC-based method for DNA methylation analysis of differential methylated regions from imprinted genes. Biotechniques, 34:356-362.
    • (2003) Biotechniques , vol.34 , pp. 356-362
    • Couvert, P.1    Poirier, K.2    Carrie, A.3    Chalas, C.4    Jouannet, P.5
  • 16
    • 0030704336 scopus 로고    scopus 로고
    • Genome methylation of the marine annelid worm Chaetopterus variopedatus: Methylation of a CpG in an expressed HI histone gene
    • Del Gaudio, R., R. Di Giaimo and G. Geraci, 1997. Genome methylation of the marine annelid worm Chaetopterus variopedatus: Methylation of a CpG in an expressed HI histone gene. FEBS Lett., 417:48-52.
    • (1997) FEBS Lett. , vol.417 , pp. 48-52
    • Del Gaudio, R.1    Di Giaimo, R.2    Geraci, G.3
  • 17
    • 76449084408 scopus 로고    scopus 로고
    • An overview on nucleases (DNase, RNase and phosphodiesterase) in snake venoms
    • Dhananjaya, B. L. and C. J. Souza, 2010. An overview on nucleases (DNase, RNase and phosphodiesterase) in snake venoms. Biochemistry (Mosc), 75:1-6.
    • (2010) Biochemistry (Mosc) , vol.75 , pp. 1-6
    • Dhananjaya, B.L.1    Souza, C.J.2
  • 18
    • 4444346815 scopus 로고    scopus 로고
    • De novo quantitative bisulphite sequencing using the pyrosequencing technology
    • Dupont, J. M., J. Tost, H. Jammes and I. G. Gut, 2004. De novo quantitative bisulphite sequencing using the pyrosequencing technology. Anal. Biochem., 33:119-127.
    • (2004) Anal. Biochem. , vol.33 , pp. 119-127
    • Dupont, J.M.1    Tost, J.2    Jammes, H.3    Gut, I.G.4
  • 19
    • 33751505540 scopus 로고    scopus 로고
    • DNA methylation profiling of human chromosomes 6, 20 and 22
    • Eckhardt, F., J. Lewin, R. Cortese, V. K. Rakyan and J. Attwood et al., 2006. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat Genet, 38:1378-1385.
    • (2006) Nat. Genet. , vol.38 , pp. 1378-1385
    • Eckhardt, F.1    Lewin, J.2    Cortese, R.3    Rakyan, V.K.4    Attwood, J.5
  • 20
    • 0021055250 scopus 로고
    • Quantitative determination of 5-methylcytosine in DNA by reverse-phase high-performance liquid chromatography
    • Eick, D., H. J. Fritz and W. Doerfler, 1983. Quantitative determination of 5-methylcytosine in DNA by reverse-phase high-performance liquid chromatography. Anal. Biochem., 135:165-171.
    • (1983) Anal. Biochem. , vol.135 , pp. 165-171
    • Eick, D.1    Fritz, H.J.2    Doerfler, W.3
  • 21
    • 0036011282 scopus 로고    scopus 로고
    • Pyrosequencing: An accurate detection platform for single nucleotide polymorphisms
    • DOI 10.1002/humu.10078
    • Fakhrai-Rad, H., N. Pourmand and M. Ronaghi, 2002. Pyrosequencing: An accurate detection platform for single nucleotide polymorphisms. Hum. Mutat, 19:479-485. (Pubitemid 34461621)
    • (2002) Human Mutation , vol.19 , Issue.5 , pp. 479-485
    • Fakhrai-Rad, H.1    Pourmand, N.2    Ronaghi, M.3
  • 22
    • 77952734605 scopus 로고    scopus 로고
    • Conservation and divergence of methylation patterning in plants and animals
    • Feng, S., S. J. Cokus, X. Zhang, P. Y. Chen and M. Bostick et al, 2010. Conservation and divergence of methylation patterning in plants and animals. Proc. Natl. Acad. Sci. USA., 107:8689-8694.
    • (2010) Proc. Natl. Acad. Sci. USA. , vol.107 , pp. 8689-8694
    • Feng, S.1    Cokus, S.J.2    Zhang, X.3    Chen, P.Y.4    Bostick, M.5
  • 23
    • 0019209301 scopus 로고
    • Enzymatic analysis of 5-methylcytosine content in eukaryotic DNA
    • Ford, J. P., M. Coca-Prados and M. T. Hsu, 1980. Enzymatic analysis of 5-methylcytosine content in eukaryotic DNA. J. Biol. Chem., 255:7544-7547.
    • (1980) J. Biol. Chem. , vol.255 , pp. 7544-7547
    • Ford, J.P.1    Coca-Prados, M.2    Hsu, M.T.3
  • 24
    • 0026546877 scopus 로고
    • A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
    • Frommer, M., L. E. McDonald, D. S. Millar, CM. Collis and F. Watt et al, 1992. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA., 89:1827-1831.
    • (1992) Proc. Natl. Acad. Sci. USA. , vol.89 , pp. 1827-1831
    • Frommer, M.1    McDonald, L.E.2    Millar, D.S.3    Collis, C.M.4    Watt, F.5
  • 26
    • 0021194159 scopus 로고
    • Quantitative reversed-phase high-performance liquid chromatography of major and modified nucleosides in DNA
    • Gehrke, C. W., R. A. McCune, M. A. Gama-Sosa, M. Ehrlich and K. C. Kuo, 1984. Quantitative reversed-phase high-performance liquid chromatography of major and modified nucleosides in DNA. J. Chromatog., 301:199-219.
    • (1984) J. Chromatog. , vol.301 , pp. 199-219
    • Gehrke, C.W.1    McCune, R.A.2    Gama-Sosa, M.A.3    Ehrlich, M.4    Kuo, K.C.5
  • 27
    • 50549192162 scopus 로고
    • Paper chromatographic separation of nucleotides, nucleosides, purines and pyrimidines
    • Gerlach, F., R. H. Dreisbach and B. Deuticke, 1965. Paper chromatographic separation of nucleotides, nucleosides, purines and pyrimidines. J. Chromatog., 18:81-85.
    • (1965) J. Chromatog. , vol.18 , pp. 81-85
    • Gerlach, F.1    Dreisbach, R.H.2    Deuticke, B.3
  • 28
    • 77954789544 scopus 로고    scopus 로고
    • Clinical applications of epigenetic markers in diagnosis and treatment of cancer
    • Gohar, A. V., 2010. Clinical applications of epigenetic markers in diagnosis and treatment of cancer. J. Biol. Sci., 10:373-385.
    • (2010) J. Biol. Sci. , vol.10 , pp. 373-385
    • Gohar, A.V.1
  • 29
    • 77954288762 scopus 로고    scopus 로고
    • Epigenetic effects of carcinogens
    • Gohar, A. V. and A. Mohammadi, 2010. Epigenetic effects of carcinogens. J. Biol. Sci., 10:200-208.
    • (2010) J. Biol. Sci. , vol.10 , pp. 200-208
    • Gohar, A.V.1    Mohammadi, A.2
  • 30
    • 0020549334 scopus 로고
    • Reverse-phase high-performance liquid chromatography of chemically modified DNA
    • Gomes, L. D. and C. J. Chang, 1983. Reverse-phase high-performance liquid chromatography of chemically modified DNA. Anal. Biochem., 129:387-391.
    • (1983) Anal. Biochem. , vol.129 , pp. 387-391
    • Gomes, L.D.1    Chang, C.J.2
  • 31
    • 0030738231 scopus 로고    scopus 로고
    • Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE)
    • Gonzalgo, M. L. and P. A. Jones, 1997. Rapid quantitation of methylation differences at specific sites using methylation-sensitive single nucleotide primer extension (Ms-SNuPE). Nucleic Acids Res., 25:2529-2531.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2529-2531
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 32
    • 0036314920 scopus 로고    scopus 로고
    • Quantitative methylation analysis using methylation-sensitive single-nucleotide primer extension (Ms-SNuPE)
    • Gonzalgo, M. L. and P. A. Jones, 2002. Quantitative methylation analysis using methylation-sensitive single-nucleotide primer extension (Ms-SNuPE). Methods, 27:128-133.
    • (2002) Methods , vol.27 , pp. 128-133
    • Gonzalgo, M.L.1    Jones, P.A.2
  • 33
    • 0014936031 scopus 로고
    • Reaction of sodium bisulfite with uracil, cytosine and their derivitaves
    • Hayatsu, H., Y. Wataya, K. Kai and S. Iida, 1970. Reaction of sodium bisulfite with uracil, cytosine and their derivitaves. Biochemistry, 9:2858-2865.
    • (1970) Biochemistry , vol.9 , pp. 2858-2865
    • Hayatsu, H.1    Wataya, Y.2    Kai, K.3    Iida, S.4
  • 34
    • 0036273144 scopus 로고    scopus 로고
    • Application of single-cell gel electrophoresis (Comet) assay for assessing levels of DNA damage in canine and feline leukocytes
    • Heaton, P. R., R. Ransley, C. J. Charlton, S. J. Mann and J. Stevenson et al., 2002. Application of single-cell gel electrophoresis (Comet) assay for assessing levels of DNA damage in canine and feline leukocytes. J. Nutr., 132:1598S-1603S.
    • (2002) J. Nutr. , vol.132
    • Heaton, P.R.1    Ransley, R.2    Charlton, C.J.3    Mann, S.J.4    Stevenson, J.5
  • 36
  • 37
    • 78649394685 scopus 로고    scopus 로고
    • RAPD-PCR patterns of genomic DNA extracted from goats liver and blood
    • Ibrahim, M. A. K., M. A. Dahi, J. M. S. Jubrael and L. Khalid, 2003. RAPD-PCR patterns of genomic DNA extracted from goats liver and blood. Selected Res. Papers, 2:32-41.
    • (2003) Selected Res. Papers , vol.2 , pp. 32-41
    • Ibrahim, M.A.K.1    Dahi, M.A.2    Jubrael, J.M.S.3    Khalid, L.4
  • 40
    • 78149447847 scopus 로고    scopus 로고
    • Perspective of DNA methylation in cancer research
    • Ibrahim, M. A., 2010a. Perspective of DNA methylation in cancer research. Int. J. Cancer Res.
    • (2010) Int. J. Cancer Res.
    • Ibrahim, M.A.1
  • 41
    • 78649438664 scopus 로고    scopus 로고
    • Prospects for DNA methylation research in psychiatric disorders
    • Ibrahim, M. A., 2010b. Prospects for DNA methylation research in psychiatric disorders. Trend Med. Res.
    • (2010) Trend Med. Res.
    • Ibrahim, M.A.1
  • 42
    • 77949805916 scopus 로고    scopus 로고
    • Detection of novel genomic polymorphism in acute lymphoblastic leukemia by random amplified polymorphic DNA analysis
    • Ibrahim, M. A., N. Saleh, E. Archoukieh, H. W. Al-Obaide, M. M. Al-Obaidi and H. M. Said, 2010a. Detection of novel genomic polymorphism in acute lymphoblastic leukemia by random amplified polymorphic DNA analysis. Int. J. Cancer Res., 6:19-26.
    • (2010) Int. J. Cancer Res. , vol.6 , pp. 19-26
    • Ibrahim, M.A.1    Saleh, N.2    Archoukieh, E.3    Al-Obaide, H.W.4    Al-Obaidi, M.M.5    Said, H.M.6
  • 44
    • 50549193165 scopus 로고
    • Chromatographic separation of nucleotides and nucleosides
    • Jacobson, K., 1964. Chromatographic separation of nucleotides and nucleosides. J. Chromatog., 14:539-542.
    • (1964) J. Chromatog. , vol.14 , pp. 539-542
    • Jacobson, K.1
  • 45
    • 77952342281 scopus 로고    scopus 로고
    • Molecular biology
    • Jeltsch, A., 2010. Molecular biology. Phylogeny Methylomes., 328:837-838.
    • (2010) Phylogeny Methylomes. , vol.328 , pp. 837-838
    • Jeltsch, A.1
  • 46
    • 24044479394 scopus 로고    scopus 로고
    • Estimating the total mouse DNA methylation according to the Bl repetitive elements
    • Jeong, K. S. and S. Lee, 2005. Estimating the total mouse DNA methylation according to the Bl repetitive elements. Biochem. Biophys. Res. Commun., 335:1211-1216.
    • (2005) Biochem. Biophys. Res. Commun. , vol.335 , pp. 1211-1216
    • Jeong, K.S.1    Lee, S.2
  • 47
    • 33744938449 scopus 로고    scopus 로고
    • LUMA (LUminometric methylation assay) a high throughput method to the analysis of genomic DNA methylation
    • Karimi, M., S. Johansson, D. Stach, M. Corcoran and D. Grander et al, 2006. LUMA (LUminometric Methylation Assay) a high throughput method to the analysis of genomic DNA methylation. Exp. Cell. Res., 321:1989-1995.
    • (2006) Exp. Cell. Res. , vol.321 , pp. 1989-1995
    • Karimi, M.1    Johansson, S.2    Stach, D.3    Corcoran, M.4    Grander, D.5
  • 48
    • 77953848845 scopus 로고    scopus 로고
    • A novel method for sensitive and specific detection of DNA methylation biomarkers based on DNA restriction during PCR cycling
    • Kneip, C, B. Schmidt, M. Fleischhacker, A. Seegebarth and J. Lewin et al., 2009. A novel method for sensitive and specific detection of DNA methylation biomarkers based on DNA restriction during PCR cycling. Biotechniques, 47:737-743.
    • (2009) Biotechniques , vol.47 , pp. 737-743
    • Kneip, C.1    Schmidt, B.2    Fleischhacker, M.3    Seegebarth, A.4    Lewin, J.5
  • 49
    • 0019202657 scopus 로고
    • Quantitative reversed-phase high performance liquid chromatographic determination of major and modified deoxyribonucleosides in DNA
    • Kuo, K. C, R. A. McCune, C. W. Gehrke, R. Midgett and M. Ehrlich, 1980. Quantitative reversed-phase high performance liquid chromatographic determination of major and modified deoxyribonucleosides in DNA. Nucleic Acids Res., 8:4763-4776.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 4763-4776
    • Kuo, K.C.1    McCune, R.A.2    Gehrke, C.W.3    Midgett, R.4    Ehrlich, M.5
  • 50
    • 0036315414 scopus 로고    scopus 로고
    • Identification of DNA methylation differences during tumorigenesis by methylation-sensitive arbitrarily primed polymerase chain reaction
    • Liang, G., M. L. Gonzalgo, C. Salem and P. A. Jones, 2002. Identification of DNA methylation differences during tumorigenesis by methylation-sensitive arbitrarily primed polymerase chain reaction. Methods, 27:150-155.
    • (2002) Methods , vol.27 , pp. 150-155
    • Liang, G.1    Gonzalgo, M.L.2    Salem, C.3    Jones, P.A.4
  • 51
    • 0027468779 scopus 로고
    • Cloning the differences between two complex genomes
    • Lisitsyn, N, N. Lisitsyn and M. Wigler, 1993. Cloning the differences between two complex genomes. Science, 259:946-951.
    • (1993) Science , vol.259 , pp. 946-951
    • Lisitsyn, N.1    Lisitsyn, N.2    Wigler, M.3
  • 52
    • 66449121652 scopus 로고    scopus 로고
    • Finding the fifth base: Genome-wide sequencing of cytosine methylation
    • Lister, L. and J. R. Ecker, 2009. Finding the fifth base: Genome-wide sequencing of cytosine methylation. Genome Res., 19:959-966.
    • (2009) Genome Res. , vol.19 , pp. 959-966
    • Lister, L.1    Ecker, J.R.2
  • 53
    • 31544469759 scopus 로고    scopus 로고
    • CpG island methylation and expression of the secreted frizzled-related protein gene family in chronic lymphocytic leukemia
    • Liu, T. H., A. Raval, S. S. Chen, J. J. Matkovic and J. C. Byrd et al, 2006. CpG island methylation and expression of the secreted frizzled-related protein gene family in chronic lymphocytic leukemia. Cancer Res., 66:653-658.
    • (2006) Cancer Res. , vol.66 , pp. 653-658
    • Liu, T.H.1    Raval, A.2    Chen, S.S.3    Matkovic, J.J.4    Byrd, J.C.5
  • 54
    • 0004803849 scopus 로고
    • Microdetermination of purines and pyrimidines in biological materials
    • Marshak, A. and H. J. Vogel, 1951. Microdetermination of purines and pyrimidines in biological materials. J. Biol. Chem., 189:597-605.
    • (1951) J. Biol. Chem. , vol.189 , pp. 597-605
    • Marshak, A.1    Vogel, H.J.2
  • 55
    • 0027571750 scopus 로고
    • DNase activity of micrococcal endonuclease covalently immobilized on nylon and polystyrene
    • Michalon, P., J. Roche, R. Couturier, G. Favre-Bonvin and C. Marion, 1993. DNase activity of micrococcal endonuclease covalently immobilized on nylon and polystyrene. Enzyme Microb. Technol., 15:215-221.
    • (1993) Enzyme Microb. Technol. , vol.15 , pp. 215-221
    • Michalon, P.1    Roche, J.2    Couturier, R.3    Favre-Bonvin, G.4    Marion, C.5
  • 56
    • 0019510628 scopus 로고
    • Reactivation of an inactive human X chromosome: Evidence for X inactivation by DNA methylation
    • Mohandas, T., R. S. Sparkes and L. J. Shapiro, 1981. Reactivation of an inactive human X chromosome: Evidence for X inactivation by DNA methylation. Science, 211:393-396.
    • (1981) Science , vol.211 , pp. 393-396
    • Mohandas, T.1    Sparkes, R.S.2    Shapiro, L.J.3
  • 57
    • 0030471926 scopus 로고    scopus 로고
    • A modified and improved method for bisulphite based cytosine methylation analysis
    • Olek, A., J. Oswald and J. A. Walter, 1996. A modified and improved method for bisulphite based cytosine methylation analysis. Nucleic Acids Res., 24:5064-5066.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 5064-5066
    • Olek, A.1    Oswald, J.2    Walter, J.A.3
  • 58
    • 0023369040 scopus 로고
    • Determination of trace amounts of 5-methylcytosine in DNA by reverse-phase high-performance liquid chromatography
    • Patel, C. V. and K. P. Gopinathan, 1987. Determination of trace amounts of 5-methylcytosine in DNA by reverse-phase high-performance liquid chromatography. Anal. Biochem., 164:164-169.
    • (1987) Anal. Biochem. , vol.164 , pp. 164-169
    • Patel, C.V.1    Gopinathan, K.P.2
  • 59
    • 0032212130 scopus 로고    scopus 로고
    • Urea improves efficiency of bisulphite-mediated sequencing of 5-methylcytosine in genomic DNA
    • Paulin, R, G. W. Grigg, M. W. Davey and A. A. Piper, 1998. Urea improves efficiency of bisulphite-mediated sequencing of 5-methylcytosine in genomic DNA. Nucleic Acids Res., 26:5009-5010.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 5009-5010
    • Paulin, R.1    Grigg, G.W.2    Davey, M.W.3    Piper, A.A.4
  • 60
    • 24044468413 scopus 로고    scopus 로고
    • Headloop suppression PCR and its application to selective amplification of methylated DNA sequences
    • Rand, K. N., T. Ho, W. Qu, S. M. Mitchell and R. White et al, 2005. Headloop suppression PCR and its application to selective amplification of methylated DNA sequences. Nucleic Acids Res., 33: e127-e127.
    • (2005) Nucleic Acids Res. , vol.33
    • Rand, K.N.1    Ho, T.2    Qu, W.3    Mitchell, S.M.4    White, R.5
  • 61
    • 34648864301 scopus 로고    scopus 로고
    • Bisulphite differntial denaturation PCR for analysis of DNA methylation
    • Rand, K. N., S. M. Mitchell, S. J. Clark and P. L. Molloy, 2006. Bisulphite differntial denaturation PCR for analysis of DNA methylation. Epigenetics, 1:94-100.
    • (2006) Epigenetics , vol.1 , pp. 94-100
    • Rand, K.N.1    Mitchell, S.M.2    Clark, S.J.3    Molloy, P.L.4
  • 62
    • 33748055105 scopus 로고    scopus 로고
    • MIRA-assisted microarray analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells
    • Rauch, T., H. Li, X. Wu and G. P. Pfeifer, 2006. MIRA-Assisted Microarray Analysis, a new technology for the determination of DNA methylation patterns, identifies frequent methylation of homeodomain-containing genes in lung cancer cells. Cancer Res., 66:7939-7947.
    • (2006) Cancer Res. , vol.66 , pp. 7939-7947
    • Rauch, T.1    Li, H.2    Wu, X.3    Pfeifer, G.P.4
  • 63
    • 0011923583 scopus 로고
    • Distribution of 5-methylcytosin in chromatin
    • Razin, A. and H. Cedar, 1977. Distribution of 5-methylcytosin in chromatin. Proc. Natl. Acad. Sci. USA., 74:2725-2728.
    • (1977) Proc. Natl. Acad. Sci. USA. , vol.74 , pp. 2725-2728
    • Razin, A.1    Cedar, H.2
  • 64
    • 58149163378 scopus 로고    scopus 로고
    • Hypermethylation of the ABCB1 downstream gene promoter accompanies ABCB1 gene amplification and increased expression in docetaxel-resistant MCF-7 breast tumor cells
    • Reed, K., S. L. Hembruff, M. L. Laberge, D. J. Villeneuve and G. B. Cote et al, 2008. Hypermethylation of the ABCB1 downstream gene promoter accompanies ABCB1 gene amplification and increased expression in docetaxel-resistant MCF-7 breast tumor cells. Epigenetics, 3:270-280.
    • (2008) Epigenetics , vol.3 , pp. 270-280
    • Reed, K.1    Hembruff, S.L.2    Laberge, M.L.3    Villeneuve, D.J.4    Cote, G.B.5
  • 65
    • 71749102589 scopus 로고    scopus 로고
    • Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences in DNA methylation
    • Reed, K., M. L. Poulin, L. Yan and A. M. Parissenti, 2010. Comparison of bisulfite sequencing PCR with pyrosequencing for measuring differences in DNA methylation. Anal. Biochem., 397:96-106.
    • (2010) Anal. Biochem. , vol.397 , pp. 96-106
    • Reed, K.1    Poulin, M.L.2    Yan, L.3    Parissenti, A.M.4
  • 66
    • 0344321897 scopus 로고    scopus 로고
    • Impact of aging on DNA methylation
    • Richardson, B., 2003. Impact of aging on DNA methylation. Ageing Res. Rev., 2:245-261.
    • (2003) Ageing Res. Rev. , vol.2 , pp. 245-261
    • Richardson, B.1
  • 67
    • 0035153070 scopus 로고    scopus 로고
    • Pyrosequencing sheds light on DNA sequencing
    • Ronaghi, M., 2001. Pyrosequencing sheds light on DNA sequencing. Genome Res., 11:3-11.
    • (2001) Genome Res. , vol.11 , pp. 3-11
    • Ronaghi, M.1
  • 69
    • 0018952647 scopus 로고
    • Identification of 5-methylcytosine in DNA fragments immobilized on nitrocellulose paper
    • Sano, H., H. D. Royer and R. Sager, 1980. Identification of 5-methylcytosine in DNA fragments immobilized on nitrocellulose paper. Proc. Natl. Acad. Sci. USA., 77:3581-3885.
    • (1980) Proc. Natl. Acad. Sci. USA. , vol.77 , pp. 3581-3885
    • Sano, H.1    Royer, H.D.2    Sager, R.3
  • 70
    • 33947297430 scopus 로고
    • Reaction of uracil and cytosine derivatives with sodium bisulphite. A specific deamination method
    • Shapiro, R., R. E. Servis and M. Welcher, 1970. Reaction of uracil and cytosine derivatives with sodium bisulphite. A specific deamination method. J. Am. Chem. Soc, 92:422-424.
    • (1970) J. Am. Chem. Soc. , vol.92 , pp. 422-424
    • Shapiro, R.1    Servis, R.E.2    Welcher, M.3
  • 71
    • 0015919849 scopus 로고
    • Nucleic acid reactivity and conformation: II. Reaction of cytosine and uracil with sodium bisulfite
    • Shapiro, R., B. Braverman, J. B. Louis and RE. Servis, 1973. Nucleic acid reactivity and conformation: II. Reaction of cytosine and uracil with sodium bisulfite. J. Biol. Chem., 248:4060-4064.
    • (1973) J. Biol. Chem. , vol.248 , pp. 4060-4064
    • Shapiro, R.1    Braverman, B.2    Louis, J.B.3    Servis, R.E.4
  • 72
    • 33847736948 scopus 로고    scopus 로고
    • Optimizing annealing temperature overcomes bias in bisulfite PCR methylation analysis
    • Shen, L., Y. Guo, X. Chen, S. Ahmed and J. P. Issa, 2007. Optimizing annealing temperature overcomes bias in bisulfite PCR methylation analysis. Biotechniques, 42:48-58.
    • (2007) Biotechniques , vol.42 , pp. 48-58
    • Shen, L.1    Guo, Y.2    Chen, X.3    Ahmed, S.4    Issa, J.P.5
  • 73
    • 3242772090 scopus 로고    scopus 로고
    • DNA methylation profiles of CpG islands for cellular differentiation and development in mammals
    • Shiota, K., 2004. DNA methylation profiles of CpG islands for cellular differentiation and development in mammals. Cytogenet. Genome Res., 105:325-334.
    • (2004) Cytogenet. Genome Res. , vol.105 , pp. 325-334
    • Shiota, K.1
  • 74
    • 0018785482 scopus 로고
    • Methylation of mouse liver DNA studied by means of the restriction enzymes Msp I and Hpa II
    • Singer, J., J. Roberts-Ems and A. D. Riggs, 1979. Methylation of mouse liver DNA studied by means of the restriction enzymes Msp I and Hpa II. Science, 203:1019-1021.
    • (1979) Science , vol.203 , pp. 1019-1021
    • Singer, J.1    Roberts-Ems, J.2    Riggs, A.D.3
  • 75
    • 0024570164 scopus 로고
    • Micrococcal nuclease: Its specificity and use for chromatin analysis
    • Telford, D. J. and B. W. Stewart, 1989. Micrococcal nuclease: Its specificity and use for chromatin analysis. Int. J. Biochem., 21:127-137.
    • (1989) Int. J. Biochem. , vol.21 , pp. 127-137
    • Telford, D.J.1    Stewart, B.W.2
  • 76
    • 0038002236 scopus 로고    scopus 로고
    • Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing
    • Tost, J., J. Dunker and I. G. Gut, 2003. Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing. Biotechniques, 35:152-156.
    • (2003) Biotechniques , vol.35 , pp. 152-156
    • Tost, J.1    Dunker, J.2    Gut, I.G.3
  • 77
    • 0033563165 scopus 로고    scopus 로고
    • Identification of differentially methylated sequences in colorectal cancer by methylated CpG island amplification
    • Toyota, M., C. Ho, N. Ahuja, K. W. Jair and Q. Li et al, 1999. Identification of differentially methylated sequences in colorectal cancer by methylated CpG island amplification. Cancer Res., 59:2307-2312.
    • (1999) Cancer Res. , vol.59 , pp. 2307-2312
    • Toyota, M.1    Ho, C.2    Ahuja, N.3    Jair, K.W.4    Li, Q.5
  • 78
    • 0035710246 scopus 로고    scopus 로고
    • DNA methylation analysis by MethyLight technology
    • Trinh, B. N., T. I. Long and P. W. Laird, 2001. DNA methylation analysis by MethyLight technology. Methods, 25:456-462.
    • (2001) Methods , vol.25 , pp. 456-462
    • Trinh, B.N.1    Long, T.I.2    Laird, P.W.3
  • 79
    • 0036962761 scopus 로고    scopus 로고
    • Evluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis
    • Uhlmann, K., A. Brinckmann, M. R. Toliat, H. Ritter and P. Nurnberg, 2002. Evluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis. Electrophoresis, 23:4072-4079.
    • (2002) Electrophoresis , vol.23 , pp. 4072-4079
    • Uhlmann, K.1    Brinckmann, A.2    Toliat, M.R.3    Ritter, H.4    Nurnberg, P.5
  • 81
    • 84988109709 scopus 로고
    • Nucleic acids and nuclear magnetic resonance
    • Van de Ven, F.J. M. and C. W. Hilbers, 1988. Nucleic acids and nuclear magnetic resonance. Eur. J. Biochem., 178:1-38.
    • (1988) Eur. J. Biochem. , vol.178 , pp. 1-38
    • Van De Ven, F.J.M.1    Hilbers, C.W.2
  • 82
    • 2542626348 scopus 로고
    • The composition of the pentose nucleic acids of yeast and pancreas
    • Vischer, E. and E. Chargaff, 1948. The composition of the pentose nucleic acids of yeast and pancreas. J. Biol. Chem., 176:715-734.
    • (1948) J. Biol. Chem. , vol.176 , pp. 715-734
    • Vischer, E.1    Chargaff, E.2
  • 84
    • 2542548558 scopus 로고
    • The purine and pyrimidine composition of deoxypentose nucleic acids
    • Wyatt, G. R., 1951. The purine and pyrimidine composition of deoxypentose nucleic acids. Biochem. J., 48:584-590.
    • (1951) Biochem. J. , vol.48 , pp. 584-590
    • Wyatt, G.R.1
  • 85
    • 0034999807 scopus 로고    scopus 로고
    • Denaturing highperformance liquid chromatography: A review
    • Xiao, W. and P. J. Oefner, 2001. Denaturing highperformance liquid chromatography: A review. Hum. Mutat, 17:439-474.
    • (2001) Hum. Mutat. , vol.17 , pp. 439-474
    • Xiao, W.1    Oefner, P.J.2
  • 86
    • 0030825309 scopus 로고    scopus 로고
    • COBRA: A sensitive and quantitative DNA methylation assay
    • Xiong, Z. and P. W. Laird, 1997. COBRA: A sensitive and quantitative DNA methylation assay. Nucleic Acids Res., 25:2532-2534.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2532-2534
    • Xiong, Z.1    Laird, P.W.2
  • 87
    • 2342557977 scopus 로고    scopus 로고
    • A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements
    • Yang, A. S., M. R. H. Estecio, K. Doshi, Y. Kondo and E. H. Tajara et al., 2004. A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements. Nucleic Acids Res., 32: e38-e38.
    • (2004) Nucleic Acids Res. , vol.32
    • Yang, A.S.1    Estecio, M.R.H.2    Doshi, K.3    Kondo, Y.4    Tajara, E.H.5
  • 88
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA
    • Zemach, A., I. E. McDaniel, P. Silva and D. Zilberman, 2010. Genome-wide evolutionary analysis of eukaryotic DNA. Methylation, 328:916-919.
    • (2010) Methylation , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4


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