메뉴 건너뛰기




Volumn 12, Issue 11, 2010, Pages 3057-3073

GeneFISH - an in situ technique for linking gene presence and cell identity in environmental microorganisms

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA MONOOXYGENASE; OXIDOREDUCTASE; POLYNUCLEOTIDE; RNA 16S; SEA WATER;

EID: 78249268816     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2010.02281.x     Document Type: Article
Times cited : (68)

References (67)
  • 1
    • 29144445330 scopus 로고    scopus 로고
    • PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample
    • Acinas, S.G., Sarma-Rupavtarm, R., Klepac-Ceraj, V., and Polz, M.F. (2005) PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Appl Environ Microbiol 71: 8966-8969.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8966-8969
    • Acinas, S.G.1    Sarma-Rupavtarm, R.2    Klepac-Ceraj, V.3    Polz, M.F.4
  • 2
    • 57649114800 scopus 로고    scopus 로고
    • Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
    • Agogue, H., Brink, M., Dinasquet, J., and Herndl, G.J. (2008) Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456: 788-791.
    • (2008) Nature , vol.456 , pp. 788-791
    • Agogue, H.1    Brink, M.2    Dinasquet, J.3    Herndl, G.J.4
  • 3
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 4
    • 0003669651 scopus 로고
    • Nucleic Acid Hybridisation - A Practical Approach
    • In, Hames, B.D., and Higgins, S.J. (eds). Oxford, UK: Oxford University Press
    • Anderson, M.L.M., and Young, B.D. (1985) Quantitative filter hybridisation. In Nucleic Acid Hybridisation - A Practical Approach. Hames, B.D., and Higgins, S.J. (eds). Oxford, UK: Oxford University Press, pp. 73-110.
    • (1985) Quantitative filter hybridisation , pp. 73-110
    • Anderson, M.L.M.1    Young, B.D.2
  • 6
    • 0037026872 scopus 로고    scopus 로고
    • DNA melting in the presence of fluorescent intercalating oxazole yellow dyes measured with a gel-based assay
    • Bjorndal, M.T., and Fygenson, D.K. (2002) DNA melting in the presence of fluorescent intercalating oxazole yellow dyes measured with a gel-based assay. Biopolymers 65: 40-44.
    • (2002) Biopolymers , vol.65 , pp. 40-44
    • Bjorndal, M.T.1    Fygenson, D.K.2
  • 7
    • 0015764063 scopus 로고
    • Reduction in the rate of DNA reassociation by sequence divergence
    • Bonner, T.I., Brenner, D.J., Neufeld, B.R., and Britten, R.J. (1973) Reduction in the rate of DNA reassociation by sequence divergence. J Mol Biol 81: 123-135.
    • (1973) J Mol Biol , vol.81 , pp. 123-135
    • Bonner, T.I.1    Brenner, D.J.2    Neufeld, B.R.3    Britten, R.J.4
  • 8
    • 35648943743 scopus 로고    scopus 로고
    • Regulated polyploidy in halophilic archaea
    • Breuert, S., Allers, T., Spohn, G., and Soppa, J. (2006) Regulated polyploidy in halophilic archaea. PLoS ONE 1: e92.
    • (2006) PLoS ONE , vol.1
    • Breuert, S.1    Allers, T.2    Spohn, G.3    Soppa, J.4
  • 9
    • 0037977118 scopus 로고    scopus 로고
    • RNA processing and degradation in Bacillus subtilis
    • Condon, C. (2003) RNA processing and degradation in Bacillus subtilis. Microbiol Mol Biol Rev 67: 157-174.
    • (2003) Microbiol Mol Biol Rev , vol.67 , pp. 157-174
    • Condon, C.1
  • 10
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set
    • Daims, H., Brühl, A., Amann, R., Schleifer, K.-H., and Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22: 434-444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.4    Wagner, M.5
  • 11
    • 32644435694 scopus 로고    scopus 로고
    • Degradation of RNA in bacteria: comparison of mRNA and stable RNA
    • Deutscher, M.P. (2006) Degradation of RNA in bacteria: comparison of mRNA and stable RNA. Nucleic Acids Res 34: 659-666.
    • (2006) Nucleic Acids Res , vol.34 , pp. 659-666
    • Deutscher, M.P.1
  • 12
    • 36849030274 scopus 로고    scopus 로고
    • Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia
    • Dunfield, P.F., Yuryev, A., Senin, P., Smirnova, A.V., Stott, M.B., Hou, S., et al. (2007) Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature 450: 879-882.
    • (2007) Nature , vol.450 , pp. 879-882
    • Dunfield, P.F.1    Yuryev, A.2    Senin, P.3    Smirnova, A.V.4    Stott, M.B.5    Hou, S.6
  • 13
    • 26844541457 scopus 로고    scopus 로고
    • Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
    • Francis, C.A., Roberts, K.J., Beman, J.M., Santoro, A.E., and Oakley, B.B. (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102: 14683-14688.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 14683-14688
    • Francis, C.A.1    Roberts, K.J.2    Beman, J.M.3    Santoro, A.E.4    Oakley, B.B.5
  • 14
    • 36148978172 scopus 로고    scopus 로고
    • Comparison of multiple DNA dyes for real-time PCR: effects of dye concentration and sequence composition on DNA amplification and melting temperature
    • Gudnason, H., Dufva, M., Bang, D.D., and Wolff, A. (2007) Comparison of multiple DNA dyes for real-time PCR: effects of dye concentration and sequence composition on DNA amplification and melting temperature. Nucleic Acids Res 35: e127.
    • (2007) Nucleic Acids Res , vol.35
    • Gudnason, H.1    Dufva, M.2    Bang, D.D.3    Wolff, A.4
  • 15
    • 0028862922 scopus 로고
    • In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities
    • Hodson, R.E., Dustman, W.A., Garg, R.P., and Moran, M.A. (1995) In situ PCR for visualization of microscale distribution of specific genes and gene products in prokaryotic communities. Appl Environ Microbiol 61: 4074-4082.
    • (1995) Appl Environ Microbiol , vol.61 , pp. 4074-4082
    • Hodson, R.E.1    Dustman, W.A.2    Garg, R.P.3    Moran, M.A.4
  • 16
    • 50049102753 scopus 로고    scopus 로고
    • Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition - FISH
    • Hoshino, T., Yilmaz, L.S., Noguera, D.R., Daims, H., and Wagner, M. (2008) Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition - FISH. Appl Environ Microbiol 74: 5068-5077.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 5068-5077
    • Hoshino, T.1    Yilmaz, L.S.2    Noguera, D.R.3    Daims, H.4    Wagner, M.5
  • 17
    • 0017672103 scopus 로고
    • Renaturation kinetics and thermal stability of DNA in aqueous solutions of formamide and urea
    • Hutton, J.R. (1977) Renaturation kinetics and thermal stability of DNA in aqueous solutions of formamide and urea. Nucleic Acids Res 4: 3538-3555.
    • (1977) Nucleic Acids Res , vol.4 , pp. 3538-3555
    • Hutton, J.R.1
  • 18
    • 0036921485 scopus 로고    scopus 로고
    • Degradation of mRNA in Escherichia coli
    • Jain, C. (2002) Degradation of mRNA in Escherichia coli. IUBMB Life 54: 315-321.
    • (2002) IUBMB Life , vol.54 , pp. 315-321
    • Jain, C.1
  • 19
    • 0032875384 scopus 로고    scopus 로고
    • The Caulobacter crescentus smc gene is required for cell cycle progression and chromosome segregation
    • Jensen, R.B., and Shapiro, L. (1999) The Caulobacter crescentus smc gene is required for cell cycle progression and chromosome segregation. Proc Natl Acad Sci USA 96: 10661-10666.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 10661-10666
    • Jensen, R.B.1    Shapiro, L.2
  • 21
    • 0035945618 scopus 로고    scopus 로고
    • Archaeal dominance in the mesopelagic zone of the Pacific Ocean
    • Karner, M.B., DeLong, E.F., and Karl, D.M. (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510.
    • (2001) Nature , vol.409 , pp. 507-510
    • Karner, M.B.1    DeLong, E.F.2    Karl, D.M.3
  • 22
    • 77349112698 scopus 로고    scopus 로고
    • Detection of single copy genes by two-pass tyramide signal amplification fluorescence in situ hybridization (Two-Pass TSA-FISH) with single oligonucleotide probes
    • Kawakami, S., Kubota, K., Imachi, H., Yamaguchi, T., Harada, H., and Ohashi, A. (2010) Detection of single copy genes by two-pass tyramide signal amplification fluorescence in situ hybridization (Two-Pass TSA-FISH) with single oligonucleotide probes. Microbes Environ 25: 15-21.
    • (2010) Microbes Environ , vol.25 , pp. 15-21
    • Kawakami, S.1    Kubota, K.2    Imachi, H.3    Yamaguchi, T.4    Harada, H.5    Ohashi, A.6
  • 23
    • 32044444305 scopus 로고    scopus 로고
    • Recognition of individual genes in diverse microorganisms by cycling primed in situ amplification
    • Kenzaka, T., Tamaki, S., Yamaguchi, N., Tani, K., and Nasu, M. (2005) Recognition of individual genes in diverse microorganisms by cycling primed in situ amplification. Appl Environ Microbiol 71: 7236-7244.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7236-7244
    • Kenzaka, T.1    Tamaki, S.2    Yamaguchi, N.3    Tani, K.4    Nasu, M.5
  • 24
    • 0026672376 scopus 로고
    • Nonenzymatic hydrolysis of oligoribonucleotides
    • Kierzek, R. (1992) Nonenzymatic hydrolysis of oligoribonucleotides. Nucleic Acids Res 20: 5079-5084.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5079-5084
    • Kierzek, R.1
  • 26
    • 68549085316 scopus 로고    scopus 로고
    • Comparative metagenomic analysis of a microbial community residing at a depth of 4000 meters at station Aloha in the North Pacific Subtropical Gyre
    • Konstantinidis, K.T., Braff, J., Karl, D.M., and Delong, E.F. (2009) Comparative metagenomic analysis of a microbial community residing at a depth of 4000 meters at station Aloha in the North Pacific Subtropical Gyre. Appl Environ Microbiol 75: 5345-5355.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5345-5355
    • Konstantinidis, K.T.1    Braff, J.2    Karl, D.M.3    Delong, E.F.4
  • 27
    • 0015092510 scopus 로고
    • Chromosome replication and the division cycle of Escherichia coli
    • Kubitschek, H.E., and Freedman, M.L. (1971) Chromosome replication and the division cycle of Escherichia coli. J Bacteriol 107: 95-99.
    • (1971) J Bacteriol , vol.107 , pp. 95-99
    • Kubitschek, H.E.1    Freedman, M.L.2
  • 28
    • 33745946807 scopus 로고    scopus 로고
    • Visualization of mcr mRNA in a methanogen by fluorescence in situ hybridization with an oligonucleotide probe and two-pass tyramide signal amplification (two-pass TSA-FISH)
    • Kubota, K., Ohashi, A., Imachi, H., and Harada, H. (2006) Visualization of mcr mRNA in a methanogen by fluorescence in situ hybridization with an oligonucleotide probe and two-pass tyramide signal amplification (two-pass TSA-FISH). J Microbiol Methods 66: 521-528.
    • (2006) J Microbiol Methods , vol.66 , pp. 521-528
    • Kubota, K.1    Ohashi, A.2    Imachi, H.3    Harada, H.4
  • 31
    • 48149098938 scopus 로고    scopus 로고
    • Cell cycle characteristics of Crenarchaeota: unity among diversity
    • Lundgren, M., Malandrin, L., Eriksson, S., Huber, H., and Bernander, R. (2008) Cell cycle characteristics of Crenarchaeota: unity among diversity. J Bacteriol 190: 5362-5367.
    • (2008) J Bacteriol , vol.190 , pp. 5362-5367
    • Lundgren, M.1    Malandrin, L.2    Eriksson, S.3    Huber, H.4    Bernander, R.5
  • 32
    • 70350052417 scopus 로고    scopus 로고
    • Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
    • Martens-Habbena, W., Berube, P.M., Urakawa, H., Torre, J.R., and Stahl, D.A. (2009) Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria. Nature 461: 976-979.
    • (2009) Nature , vol.461 , pp. 976-979
    • Martens-Habbena, W.1    Berube, P.M.2    Urakawa, H.3    Torre, J.R.4    Stahl, D.A.5
  • 33
    • 0043030061 scopus 로고    scopus 로고
    • Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification
    • Maruyama, F., Kenzaka, T., Yamaguchi, N., Tani, K., and Nasu, M. (2003) Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification. Appl Environ Microbiol 69: 5023-5028.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5023-5028
    • Maruyama, F.1    Kenzaka, T.2    Yamaguchi, N.3    Tani, K.4    Nasu, M.5
  • 34
    • 29144504169 scopus 로고    scopus 로고
    • Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification
    • Maruyama, F., Kenzaka, T., Yamaguchi, N., Tani, K., and Nasu, M. (2005) Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification. Appl Environ Microbiol 71: 7933-7940.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7933-7940
    • Maruyama, F.1    Kenzaka, T.2    Yamaguchi, N.3    Tani, K.4    Nasu, M.5
  • 35
    • 0030620440 scopus 로고    scopus 로고
    • Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
    • Massana, R., Murray, A.E., Preston, C.M., and DeLong, E.F. (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol 63: 50-56.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 50-56
    • Massana, R.1    Murray, A.E.2    Preston, C.M.3    DeLong, E.F.4
  • 36
    • 34247847886 scopus 로고    scopus 로고
    • Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
    • Mincer, T.J., Church, M.J., Taylor, L.T., Preston, C., Karl, D.M., and DeLong, E.F. (2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre. Environ Microbiol 9: 1162-1175.
    • (2007) Environ Microbiol , vol.9 , pp. 1162-1175
    • Mincer, T.J.1    Church, M.J.2    Taylor, L.T.3    Preston, C.4    Karl, D.M.5    DeLong, E.F.6
  • 37
    • 15544371286 scopus 로고    scopus 로고
    • Comparison of SYT09 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis
    • Monis, P.T., Giglio, S., and Saint, C.P. (2005) Comparison of SYT09 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis. Anal Biochem 340: 24-34.
    • (2005) Anal Biochem , vol.340 , pp. 24-34
    • Monis, P.T.1    Giglio, S.2    Saint, C.P.3
  • 38
    • 78249281491 scopus 로고    scopus 로고
    • Concepts and software for a rational design of polynucleotide probes
    • doi:10.1111/j.1758-2229.2010.00189.x
    • Moraru, C., Moraru, G., Fuchs, B.M., and Amann, R. (2010) Concepts and software for a rational design of polynucleotide probes. Environ Microbiol Rep (in press): doi:10.1111/j.1758-2229.2010.00189.x
    • (2010) Environ Microbiol Rep
    • Moraru, C.1    Moraru, G.2    Fuchs, B.M.3    Amann, R.4
  • 40
    • 0030768426 scopus 로고    scopus 로고
    • Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli
    • Niki, H., and Hiraga, S. (1997) Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli. Cell 90: 951-957.
    • (1997) Cell , vol.90 , pp. 951-957
    • Niki, H.1    Hiraga, S.2
  • 41
    • 0032053854 scopus 로고    scopus 로고
    • Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning
    • Niki, H., and Hiraga, S. (1998) Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning. Genes Dev 12: 1036-1045.
    • (1998) Genes Dev , vol.12 , pp. 1036-1045
    • Niki, H.1    Hiraga, S.2
  • 42
    • 46149095739 scopus 로고    scopus 로고
    • Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments
    • Park, S.-J., Park, B.-J., and Rhee, S.-K. (2008) Comparative analysis of archaeal 16S rRNA and amoA genes to estimate the abundance and diversity of ammonia-oxidizing archaea in marine sediments. Extremophiles 12: 605-615.
    • (2008) Extremophiles , vol.12 , pp. 605-615
    • Park, S.1    Park, B.2    Rhee, S.3
  • 43
    • 4644226321 scopus 로고    scopus 로고
    • Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria
    • Pernthaler, A., and Amann, R. (2004) Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria. Appl Environ Microbiol 70: 5426-5433.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5426-5433
    • Pernthaler, A.1    Amann, R.2
  • 44
    • 27644555223 scopus 로고    scopus 로고
    • Simultaneous fluorescence in situ hybridization of mRNA and rRNA for the detection of gene expression in environmental microbes
    • Pernthaler, A., and Pernthaler, J. (2005) Simultaneous fluorescence in situ hybridization of mRNA and rRNA for the detection of gene expression in environmental microbes. Methods Enzymol 397: 351-371.
    • (2005) Methods Enzymol , vol.397 , pp. 351-371
    • Pernthaler, A.1    Pernthaler, J.2
  • 45
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler, A., Pernthaler, J., and Amann, R. (2002) Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68: 3094-3101.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 46
    • 52949113790 scopus 로고    scopus 로고
    • Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
    • Prosser, J.I., and Nicol, G.W. (2008) Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment. Environ Microbiol 10: 2931-2941.
    • (2008) Environ Microbiol , vol.10 , pp. 2931-2941
    • Prosser, J.I.1    Nicol, G.W.2
  • 47
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys
    • Purkhold, U., Pommerening-Röser, A., Juretschko, S., Schmid, M.C., Koops, H.-P., and Wagner, M. (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66: 5368-5382.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5368-5382
    • Purkhold, U.1    Pommerening-Röser, A.2    Juretschko, S.3    Schmid, M.C.4    Koops, H.5    Wagner, M.6
  • 48
    • 0022586762 scopus 로고
    • Denaturation, renaturation, and loss of DNA during in situ hybridization procedures
    • Raap, A.K., Marijnen, J.G.J., Vrolijk, J., and Ploeg, M.v.d. (1986) Denaturation, renaturation, and loss of DNA during in situ hybridization procedures. Cytometry 7: 235-242.
    • (1986) Cytometry , vol.7 , pp. 235-242
    • Raap, A.K.1    Marijnen, J.G.J.2    Vrolijk, J.3    Ploeg, M.4
  • 49
    • 0004136246 scopus 로고    scopus 로고
    • Molecular Cloning Manual
    • New York, USA: Cold Spring Harbor Laboratory.
    • Sambrook, J. (2001) Molecular Cloning Manual. New York, USA: Cold Spring Harbor Laboratory.
    • (2001)
    • Sambrook, J.1
  • 52
    • 15444362001 scopus 로고    scopus 로고
    • Introducing dotur, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D., and Handelsman, J. (2005) Introducing dotur, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 53
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., et al. (2009) Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 54
    • 34247530295 scopus 로고    scopus 로고
    • Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization
    • Smolina, I., Lee, C., and Frank-Kamenetskii, M. (2007) Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization. Appl Environ Microbiol 73: 2324-2328.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2324-2328
    • Smolina, I.1    Lee, C.2    Frank-Kamenetskii, M.3
  • 55
    • 0024638977 scopus 로고
    • Simple, rapid method for direct isolation of nucleic acids from aquatic environments
    • Somerville, C.C., Knight, I.T., Straube, W.L., and Colwell, R.R. (1989) Simple, rapid method for direct isolation of nucleic acids from aquatic environments. Appl Environ Microbiol 55: 548-554.
    • (1989) Appl Environ Microbiol , vol.55 , pp. 548-554
    • Somerville, C.C.1    Knight, I.T.2    Straube, W.L.3    Colwell, R.R.4
  • 56
    • 0031958235 scopus 로고    scopus 로고
    • Development of a direct in situ PCR method for detection of specific bacteria in natural environments
    • Tani, K., Kurokawa, K., and Nasu, M. (1998) Development of a direct in situ PCR method for detection of specific bacteria in natural environments. Appl Environ Microbiol 64: 1536-1540.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1536-1540
    • Tani, K.1    Kurokawa, K.2    Nasu, M.3
  • 57
    • 33749466450 scopus 로고    scopus 로고
    • Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic
    • Teira, E., Lebaron, P., Aken, H.v., and Herndl, G.J. (2006) Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic. Limnol Oceanogr 51: 2131-2144.
    • (2006) Limnol Oceanogr , vol.51 , pp. 2131-2144
    • Teira, E.1    Lebaron, P.2    Aken, H.3    Herndl, G.J.4
  • 58
    • 28644435323 scopus 로고    scopus 로고
    • Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
    • Treusch, A.H., Leininger, S., Kletzin, A., Schuster, S.C., Klenk, H.-P., and Schleper, C. (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7: 1985-1995.
    • (2005) Environ Microbiol , vol.7 , pp. 1985-1995
    • Treusch, A.H.1    Leininger, S.2    Kletzin, A.3    Schuster, S.C.4    Klenk, H.5    Schleper, C.6
  • 60
    • 3042548402 scopus 로고    scopus 로고
    • Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication
    • Viollier, P.H., Thanbichler, M., McGrath, P.T., West, L., Meewan, M., McAdams, H.H., and Shapiro, L. (2004) Rapid and sequential movement of individual chromosomal loci to specific subcellular locations during bacterial DNA replication. Proc Natl Acad Sci USA 101: 9257-9262.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9257-9262
    • Viollier, P.H.1    Thanbichler, M.2    McGrath, P.T.3    West, L.4    Meewan, M.5    McAdams, H.H.6    Shapiro, L.7
  • 62
    • 0021770258 scopus 로고
    • Self cleavage of a precursor RNA from bacteriophage T4
    • Watson, N., Gurevitz, M., Ford, J., and Apirion, D. (1984) Self cleavage of a precursor RNA from bacteriophage T4. J Mol Biol 172: 301-323.
    • (1984) J Mol Biol , vol.172 , pp. 301-323
    • Watson, N.1    Gurevitz, M.2    Ford, J.3    Apirion, D.4
  • 63
    • 0025944267 scopus 로고
    • DNA probes: applications of the principles of nucleic acid hybridization
    • Wetmur, J.G. (1991) DNA probes: applications of the principles of nucleic acid hybridization. Crit Rev Biochem Mol Biol 26: 227-259.
    • (1991) Crit Rev Biochem Mol Biol , vol.26 , pp. 227-259
    • Wetmur, J.G.1
  • 64
    • 0014413352 scopus 로고
    • Kinetics of renaturation of DNA
    • Wetmur, J.G., and Davidson, N. (1968) Kinetics of renaturation of DNA. J Mol Biol 31: 349-370.
    • (1968) J Mol Biol , vol.31 , pp. 349-370
    • Wetmur, J.G.1    Davidson, N.2
  • 65
    • 0036739377 scopus 로고    scopus 로고
    • Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones
    • Wild, J., Hradecna, Z., and Szybalski, W. (2002) Conditionally amplifiable BACs: switching from single-copy to high-copy vectors and genomic clones. Genome Res 12: 1434-1444.
    • (2002) Genome Res , vol.12 , pp. 1434-1444
    • Wild, J.1    Hradecna, Z.2    Szybalski, W.3
  • 67
    • 0346964274 scopus 로고    scopus 로고
    • Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization - RING-FISH
    • Zwirglmaier, K., Ludwig, W., and Schleifer, K.H. (2004) Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization - RING-FISH. Mol Microbiol 51: 89-96.
    • (2004) Mol Microbiol , vol.51 , pp. 89-96
    • Zwirglmaier, K.1    Ludwig, W.2    Schleifer, K.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.