-
1
-
-
78149423118
-
A new test statistic based on shrunken sample variance for identifying differentially expressed genes in small microarray experiments
-
Hirakawa A, Sato Y, Hamada C, Yoshimura I (2008) A new test statistic based on shrunken sample variance for identifying differentially expressed genes in small microarray experiments. Bioinform Biol Insights 2: 145-156.
-
(2008)
Bioinform Biol Insights
, vol.2
, pp. 145-156
-
-
Hirakawa, A.1
Sato, Y.2
Hamada, C.3
Yoshimura, I.4
-
2
-
-
33645643565
-
A two-sample Bayesian t-test for microarray data
-
Fox RJ, Dimmic MW (2006) A two-sample Bayesian t-test for microarray data. BMC Bioinformatics 7: 126.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 126
-
-
Fox, R.J.1
Dimmic, M.W.2
-
3
-
-
24644493356
-
Learning Petri Net Models of Non-linear Gene Interactions
-
Mayo M (2005) Learning Petri Net Models of Non-linear Gene Interactions. Biosystems 82: 74-82.
-
(2005)
Biosystems
, vol.82
, pp. 74-82
-
-
Mayo, M.1
-
4
-
-
0034973569
-
Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
-
Marylyn DR, Lance WH, Nady R, Bailey LR, William DD, et al. (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. American Society of Human Genetics 69: 138-147.
-
(2001)
American Society of Human Genetics
, vol.69
, pp. 138-147
-
-
Marylyn, D.R.1
Lance, W.H.2
Nady, R.3
Bailey, L.R.4
William, D.D.5
-
5
-
-
75649151459
-
Reconstructing Nonlinear Dynamic Models of Gene Regulation using Stochastic sampling
-
Johanna M, Daniel R, Gerhard R, Karderali L (2009) Reconstructing Nonlinear Dynamic Models of Gene Regulation using Stochastic sampling. BMC Bioinformatics 10: 448-460.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 448-460
-
-
Johanna, M.1
Daniel, R.2
Gerhard, R.3
Karderali, L.4
-
6
-
-
0030756656
-
Nonlinear Systems Identification: Autocorrelation vs Autoskewness
-
Michel S, Curley F (1997) Nonlinear Systems Identification: Autocorrelation vs Autoskewness. Journal of Applied Physiology 83: 975-993.
-
(1997)
Journal of Applied Physiology
, vol.83
, pp. 975-993
-
-
Michel, S.1
Curley, F.2
-
8
-
-
12044257427
-
Kurtosis, Skewness, and Non-Gaussian Cosmological Density Perturbations
-
Luo X, Schramm DN (1993) Kurtosis, Skewness, and Non-Gaussian Cosmological Density Perturbations. The Astrophysical Journal 408: 33-42.
-
(1993)
The Astrophysical Journal
, vol.408
, pp. 33-42
-
-
Luo, X.1
Schramm, D.N.2
-
9
-
-
38849133420
-
Selective Control of the Apoptosis Signaling Network in Heterogeneous Cell Populations
-
Calzolari D, Paternostro G, Harrington PL, Jr., Piermarocchi C, Duxbury PM (2007) Selective Control of the Apoptosis Signaling Network in Heterogeneous Cell Populations. PLoS One 2(26): e547.
-
(2007)
PLoS One
, vol.2
, Issue.26
-
-
Calzolari, D.1
Paternostro, G.2
Harrington Jr., P.L.3
Piermarocchi, C.4
Duxbury, P.M.5
-
11
-
-
0035942271
-
Significance analysis of Microarray applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of Microarray applied to the ionizing radiation response. Proc Natl Acad Sci USA 98: 5116-5121.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
12
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, et al. (1999) Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
-
13
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, et al. (2005) A gene expression map of Arabidopsis thaliana development. Nat Genet 37: 501-506.
-
(2005)
Nat Genet
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
-
14
-
-
33748644662
-
Probe-level measurement error improves accuracy in detecting differential gene expression
-
Liu X, Milo M, Lawrence ND, Rattray M (2006) Probe-level measurement error improves accuracy in detecting differential gene expression. Bioinformatics 22: 2107-2113.
-
(2006)
Bioinformatics
, vol.22
, pp. 2107-2113
-
-
Liu, X.1
Milo, M.2
Lawrence, N.D.3
Rattray, M.4
-
15
-
-
27644528185
-
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential
-
Shi L, Tong W, Fang H, Scherf U, Han J, et al. (2005) Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics 6 Suppl 2: S12.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 2
-
-
Shi, L.1
Tong, W.2
Fang, H.3
Scherf, U.4
Han, J.5
-
17
-
-
33750943221
-
Ranking Analysis of Microarray Data: A Powerful Method for Identifying Different Expressed Genes
-
Tan YD, MyriamFornage, Fu YX (2006) Ranking Analysis of Microarray Data: A Powerful Method for Identifying Different Expressed Genes. Genomics 88: 846-854.
-
(2006)
Genomics
, vol.88
, pp. 846-854
-
-
Tan, Y.D.1
Myriamfornage, F.Y.X.2
-
18
-
-
34147123145
-
The Optimal Discovery Procedure for Large-scale Significance Testing, With Application to Comparative Microarray Experiments
-
Storey JD, Dai JY, Leek JT (2007) The Optimal Discovery Procedure for Large-scale Significance Testing, With Application to Comparative Microarray Experiments. Biostatistics 8: 414-432.
-
(2007)
Biostatistics
, vol.8
, pp. 414-432
-
-
Storey, J.D.1
Dai, J.Y.2
Leek, J.T.3
-
19
-
-
25144474547
-
Hotelling' T2 Multivariate profiling for detecting differential expression in microarrays
-
LuYan, Liu PY, XiaoPeng, Deng HW. (2005) Hotelling' T2 Multivariate profiling for detecting differential expression in microarrays. Bioinformatics 21: 3105-3113.
-
(2005)
Bioinformatics
, vol.21
, pp. 3105-3113
-
-
Luyan, L.P.Y.1
Xiao, P.D.H.W.2
-
20
-
-
24144445705
-
Improved Statistical Tests for Differential Gene Expression by Shrinking Variance Components
-
Cui XQ, Hwang JTG, Qiu J (2005) Improved Statistical Tests for Differential Gene Expression by Shrinking Variance Components. Biostatistics 6: 59-75.
-
(2005)
Biostatistics
, vol.6
, pp. 59-75
-
-
Cui, X.Q.1
Hwang, J.T.G.2
Qiu, J.3
-
21
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray experiments
-
Cui XQ, Churchill GA (2003) Statistical tests for differential expression in cDNA microarray experiments. Genome Biology 4: 210.
-
(2003)
Genome Biology
, vol.4
, pp. 210
-
-
Cui, X.Q.1
Churchill, G.A.2
-
26
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi P, Long AD (2001) A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinfomatics 17: 509-519.
-
(2001)
Bioinfomatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
27
-
-
65849488472
-
Intra-Platform Repeatability and Inter-Platform Comparability of MicroRNA Microarray Technology
-
Sato F, Tsuchiya S, Terasawa K, Tsujimoto G (2009) Intra-Platform Repeatability and Inter-Platform Comparability of MicroRNA Microarray Technology. PLoS One 4(5): e5540.
-
(2009)
PLoS One
, vol.4
, Issue.5
-
-
Sato, F.1
Tsuchiya, S.2
Terasawa, K.3
Tsujimoto, G.4
-
28
-
-
0042424602
-
Statistical significance for genomewide studies
-
John DS, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100: 9440-9445.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
John, D.S.1
Tibshirani, R.2
-
30
-
-
22144461265
-
Preferred Analysis Methods for Affymetrix GeneChips Revealed by A Wholly Defined Control Dataset
-
Choe SE, Boutros M, Michelson AM, Church GM, Halfon MS (2005) Preferred Analysis Methods for Affymetrix GeneChips Revealed by A Wholly Defined Control Dataset. Genome Biolgoy 6: 16-28.
-
(2005)
Genome Biolgoy
, vol.6
, pp. 16-28
-
-
Choe, S.E.1
Boutros, M.2
Michelson, A.M.3
Church, G.M.4
Halfon, M.S.5
-
31
-
-
0037069938
-
Down-regulation of caspase 3 in breast cancer: A possible mechanism for chemoresistance
-
Devarajan E, Sahin AA, Chen JS, Krishnamurthy RR, Aggarwal N, et al. (2002) Down-regulation of caspase 3 in breast cancer: a possible mechanism for chemoresistance. Oncogene 21: 8843-8851.
-
(2002)
Oncogene
, vol.21
, pp. 8843-8851
-
-
Devarajan, E.1
Sahin, A.A.2
Chen, J.S.3
Krishnamurthy, R.R.4
Aggarwal, N.5
-
32
-
-
65949105079
-
High Incidence of Protein-Truncating TP53 Mutations in BRCA1-Related
-
Holstege H, Joosse SA, van Oostrom CT, Nederlof PM, de Vries A, et al. (2009) High Incidence of Protein-Truncating TP53 Mutations in BRCA1-Related. Breast Cancer Cancer Research 69: 3625.
-
(2009)
Breast Cancer Cancer Research
, vol.69
, pp. 3625
-
-
Holstege, H.1
Joosse, S.A.2
van Oostrom, C.T.3
Nederlof, P.M.4
de Vries, A.5
-
33
-
-
0037221767
-
TP53 and breast cancer
-
Børresen-Dale AL (2003) TP53 and breast cancer. Hum Mutat 21: 292-300.
-
(2003)
Hum Mutat
, vol.21
, pp. 292-300
-
-
Børresen-Dale, A.L.1
-
34
-
-
34250760957
-
TP53 mutation status and gene expression profiles are powerful prognostic markers of breast cancer
-
Langerød A, Zhao H, Borgan Ø, Nesland JM, Bukholm IR, et al. (2007) TP53 mutation status and gene expression profiles are powerful prognostic markers of breast cancer. Breast Cancer Research 9: R30.
-
(2007)
Breast Cancer Research
, vol.9
-
-
Langerød, A.1
Zhao, H.2
Borgan, O.3
Nesland, J.M.4
Bukholm, I.R.5
-
35
-
-
34548094807
-
Genetic variation in TP53 and risk of breast cancer in a population-based case-control study
-
Sprague BL, Trentham-Dietz A, Garcia-Closas M, Newcomb PA, Titus-Ernstoff L, et al. (2007) Genetic variation in TP53 and risk of breast cancer in a population-based case-control study. Carcinogenesis 28: 1680.
-
(2007)
Carcinogenesis
, vol.28
, pp. 1680
-
-
Sprague, B.L.1
Trentham-Dietz, A.2
Garcia-Closas, M.3
Newcomb, P.A.4
Titus-Ernstoff, L.5
-
36
-
-
43149126354
-
CCND1 amplification and cyclin D1 expression in breast cancer and their relation with proteomic subgroups and patient outcome
-
Elsheikh S, Green AR, Aleskandarany MA, Grainge M, Paish CE, et al. (2008) CCND1 amplification and cyclin D1 expression in breast cancer and their relation with proteomic subgroups and patient outcome. Breast Cancer Research and Treatment 109: 325-335.
-
(2008)
Breast Cancer Research and Treatment
, vol.109
, pp. 325-335
-
-
Elsheikh, S.1
Green, A.R.2
Aleskandarany, M.A.3
Grainge, M.4
Paish, C.E.5
-
37
-
-
28844488762
-
Alteration on the expression of IL-1, PDGF, TGF-beta, EGF, and FGF receptors and c-Fos and c-Myc proteins in bone marrow mesenchymal stroma cells from advanced untreated lung and breast cancer patients
-
Hofer EL, La Russa V, Honegger AE, Bullorsky EO, Bordenave RH, et al. (2005) Alteration on the expression of IL-1, PDGF, TGF-beta, EGF, and FGF receptors and c-Fos and c-Myc proteins in bone marrow mesenchymal stroma cells from advanced untreated lung and breast cancer patients. Stem Cells Dev 14: 587-594.
-
(2005)
Stem Cells Dev
, vol.14
, pp. 587-594
-
-
Hofer, E.L.1
la Russa, V.2
Honegger, A.E.3
Bullorsky, E.O.4
Bordenave, R.H.5
-
38
-
-
74049105681
-
WNT signaling enhances breast cancer cell motility and blockade of the WNT pathway by sFRP1 suppresses MDA-MB-23 xenograft growth
-
Masuda Y, Schlange T, Oakeley EJ, Boulay A, Hynes NE (2009) WNT signaling enhances breast cancer cell motility and blockade of the WNT pathway by sFRP1 suppresses MDA-MB-23 xenograft growth. Breast Cancer Research 11: R32.
-
(2009)
Breast Cancer Research
, vol.11
-
-
Masuda, Y.1
Schlange, T.2
Oakeley, E.J.3
Boulay, A.4
Hynes, N.E.5
-
39
-
-
0035719960
-
Wnt signaling in breast cancer: Have we come full circle?
-
Brown AM (2001) Wnt signaling in breast cancer: have we come full circle? Breast Cancer Research 3: 351-355.
-
(2001)
Breast Cancer Research
, vol.3
, pp. 351-355
-
-
Brown, A.M.1
-
40
-
-
0141995804
-
WIF1, a component of the Wnt Pathway, is down-regulated in prostate, breast,lung, and bladder cancer
-
Wissmann C, Wild PJ, Kaiser S, Roepcke S, Stoehr R, et al. (2003) WIF1, a component of the Wnt Pathway, is down-regulated in prostate, breast,lung, and bladder cancer. The Journal of Pathology 201: 204-212.
-
(2003)
The Journal of Pathology
, vol.201
, pp. 204-212
-
-
Wissmann, C.1
Wild, P.J.2
Kaiser, S.3
Roepcke, S.4
Stoehr, R.5
-
41
-
-
34548277989
-
Genetic Screen for Chromosome Instability in Mice: Mcm4 and breast cancer
-
Shima N, Buske TR, Schimenti JC (2007) Genetic Screen for Chromosome Instability in Mice: Mcm4 and breast cancer. Cell Cycle 6: 1135-1140.
-
(2007)
Cell Cycle
, vol.6
, pp. 1135-1140
-
-
Shima, N.1
Buske, T.R.2
Schimenti, J.C.3
-
42
-
-
20444432334
-
Toll-Like Receptors on Tumor Cells Facilitate Evasion of Immune Surveillance
-
Huang B, Zhao J, Li H, He KL, Chen Y, et al. (2005) Toll-Like Receptors on Tumor Cells Facilitate Evasion of Immune Surveillance. Cancer Research 65: 5009.
-
(2005)
Cancer Research
, vol.65
, pp. 5009
-
-
Huang, B.1
Zhao, J.2
Li, H.3
He, K.L.4
Chen, Y.5
-
43
-
-
37349014037
-
Chemopreventive agents induce programmed death-1-ligand 1(PD-L1) surface expression in breast cancer cells and promote PD-L1-mediated T cell apoptosis
-
Zhang P, Su DM, Liang M, Fu J (2008) Chemopreventive agents induce programmed death-1-ligand 1(PD-L1) surface expression in breast cancer cells and promote PD-L1-mediated T cell apoptosis. Molecular Immunology 45: 1470-1476.
-
(2008)
Molecular Immunology
, vol.45
, pp. 1470-1476
-
-
Zhang, P.1
Su, D.M.2
Liang, M.3
Fu, J.4
-
45
-
-
0346937461
-
Exact Skewness-Kurtosis Tests for Multivariate Normality and Goodness-of-Fit in Multivariate Regression with Application to Asset Pricing Models
-
Dufour JM, Khalaf L, Beaulieu MC (2003) Exact Skewness-Kurtosis Tests for Multivariate Normality and Goodness-of-Fit in Multivariate Regression with Application to Asset Pricing Models. Oxford Bulletin Of Economics And Statistics 65: 891-906.
-
(2003)
Oxford Bulletin of Economics and Statistics
, vol.65
, pp. 891-906
-
-
Dufour, J.M.1
Khalaf, L.2
Beaulieu, M.C.3
-
47
-
-
76249130293
-
Regulatory interdependence of myeloid transcription factors revealed by matrix RNAi analysis
-
Tomaru Y, Simon C, Forrest AR, Miura H, Kubosaki A, et al. (2009) Regulatory interdependence of myeloid transcription factors revealed by matrix RNAi analysis. Genome Biolgoy 10: R121.
-
(2009)
Genome Biolgoy
, vol.10
-
-
Tomaru, Y.1
Simon, C.2
Forrest, A.R.3
Miura, H.4
Kubosaki, A.5
|