-
1
-
-
0031246430
-
Ratio-based decisions and the quantitative analysis of cDNA microarray images
-
Chen Y, Dougherty ER, Bittner ML: Ratio-based decisions and the quantitative analysis of cDNA microarray images. J Biomed Optics 1997, 2(4):364-374.
-
(1997)
J Biomed Optics
, vol.2
, Issue.4
, pp. 364-374
-
-
Chen, Y.1
Dougherty, E.R.2
Bittner, M.L.3
-
2
-
-
0037276175
-
Statistical tests for differential expression in cDNA microarray expriments
-
Cui X, Churchill G: Statistical tests for differential expression in cDNA microarray expriments. Genome Biology 2003, 4(4):210.0-210.1.
-
(2003)
Genome Biology
, vol.4
, Issue.4
-
-
Cui, X.1
Churchill, G.2
-
3
-
-
0036574916
-
Statistical issues with microarrays: Processing and analysis
-
Nadon R, Shoemaker J: Statistical issues with microarrays: processing and analysis. Trends in Genetics 2002, 18(5):265-271.
-
(2002)
Trends in Genetics
, vol.18
, Issue.5
, pp. 265-271
-
-
Nadon, R.1
Shoemaker, J.2
-
4
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
Baldi P, Long A: A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 2001, 17(6):509-519.
-
(2001)
Bioinformatics
, vol.17
, Issue.6
, pp. 509-519
-
-
Baldi, P.1
Long, A.2
-
5
-
-
9444291270
-
Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays
-
Townsend J: Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays. BMC Genomics 2003, 4(41):.
-
(2003)
BMC Genomics
, vol.4
, Issue.41
-
-
Townsend, J.1
-
6
-
-
20044367625
-
An experimental evaluation of a loop versus a reference design for two-channel microarrays
-
Vinciotti V, Khanin R, xD'Alimonte R, Liu X, Cattini N, Hotchkiss G, G. B, de Jesus O, Rasaiyaah J, Smith CP, Kellam P, Wit E: An experimental evaluation of a loop versus a reference design for two-channel microarrays. Bioinformatics 2005, 21(4):492-501.
-
(2005)
Bioinformatics
, vol.21
, Issue.4
, pp. 492-501
-
-
Vinciotti, V.1
Khanin, R.2
xD'Alimonte, R.3
Liu, X.4
Cattini, N.5
Hotchkiss, G.G.B.6
de Jesus, O.7
Rasaiyaah, J.8
Smith, C.P.9
Kellam, P.10
Wit, E.11
-
7
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang YH, Speed T: Design issues for cDNA microarray experiments. Nat Rev Genet 2002, 3(8):579-588.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.8
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
8
-
-
0038523952
-
Genomic binding by the Drosophlia Myc, Max, Mad/Mnt transcription factor network
-
Orian A, van Steensel B, Delrow J, Bussemaker HJ, Li L, Sawado T, Williams E, Loo LW, Cowley SM, Yost C, Pierce S, B.A. E, Parkhurst SM, Eisenman RN: Genomic binding by the Drosophlia Myc, Max, Mad/Mnt transcription factor network. Genes Dev 2003, 17(9):1101-1114.
-
(2003)
Genes Dev
, vol.17
, Issue.9
, pp. 1101-1114
-
-
Orian, A.1
van Steensel, B.2
Delrow, J.3
Bussemaker, H.J.4
Li, L.5
Sawado, T.6
Williams, E.7
Loo, L.W.8
Cowley, S.M.9
Yost, C.10
Pierce, S.B.A.E.11
Parkhurst, S.M.12
Eisenman, R.N.13
-
9
-
-
0041560908
-
Molecular signature of human embryonic stem cells and its comparison with the mouse
-
Sato N, Sanjuan IM, Heke M, Uchida M, Naef F, Brivanlou AH: Molecular signature of human embryonic stem cells and its comparison with the mouse. Dev Biol 2003, 260(2):404-413.
-
(2003)
Dev Biol
, vol.260
, Issue.2
, pp. 404-413
-
-
Sato, N.1
Sanjuan, I.M.2
Heke, M.3
Uchida, M.4
Naef, F.5
Brivanlou, A.H.6
-
10
-
-
0037039164
-
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3
-
Tompa R, McCallum CM, Delrow J, Henikoff JG, van Steensel B, Henikoff S: Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Curr Biol 2002, 12(1):65-68.
-
(2002)
Curr Biol
, vol.12
, Issue.1
, pp. 65-68
-
-
Tompa, R.1
McCallum, C.M.2
Delrow, J.3
Henikoff, J.G.4
van Steensel, B.5
Henikoff, S.6
-
11
-
-
9444265265
-
Obtaining reliable information from minute amounts of RNA using cDNA microarrays
-
Hu L, Wang J, Baggerly K, Wang H, Fuller GN, Hamilton SR, Coombes KR, Zhang W: Obtaining reliable information from minute amounts of RNA using cDNA microarrays. BMC Genomics 2002, 3(16):.
-
(2002)
BMC Genomics
, vol.3
, Issue.16
-
-
Hu, L.1
Wang, J.2
Baggerly, K.3
Wang, H.4
Fuller, G.N.5
Hamilton, S.R.6
Coombes, K.R.7
Zhang, W.8
-
12
-
-
0037303824
-
Induced gene expression in human brain after the split from chimpanzee
-
Gu J, Gu X: Induced gene expression in human brain after the split from chimpanzee. Trends Genet 2003, 19(2):63-65.
-
(2003)
Trends Genet
, vol.19
, Issue.2
, pp. 63-65
-
-
Gu, J.1
Gu, X.2
-
13
-
-
0141626917
-
The effect of replication on gene expression microarray experiments
-
Pavlidis P, Li. Q, Noble WS: The effect of replication on gene expression microarray experiments. Bioinformatics 2003, 19(13):1620-1627.
-
(2003)
Bioinformatics
, vol.19
, Issue.13
, pp. 620-1627
-
-
Pavlidis, P.1
Li, Q.2
Noble, W.S.3
-
14
-
-
21444454257
-
False discovery rate, sensitivity and sample size for microarray studies
-
Pawitan Y, Michiels S, Koscielny S, Gusnanto A, Ploner A: False discovery rate, sensitivity and sample size for microarray studies. Bioinformatics 2005, 21(13):3017-3024.
-
(2005)
Bioinformatics
, vol.21
, Issue.13
, pp. 3017-3024
-
-
Pawitan, Y.1
Michiels, S.2
Koscielny, S.3
Gusnanto, A.4
Ploner, A.5
-
15
-
-
0034911875
-
An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles
-
Thomas JG, Olson JM, Tapscott SJ, Zhao LP: An efficient and robust statistical modeling approach to discover differentially expressed genes using genomic expression profiles. Genome Res 2001, 11(7):1227-1236.
-
(2001)
Genome Res
, vol.11
, Issue.7
, pp. 1227-1236
-
-
Thomas, J.G.1
Olson, J.M.2
Tapscott, S.J.3
Zhao, L.P.4
-
16
-
-
0034923013
-
On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
-
Newton MA, Kendziorski CM, Richmond CS, Blattner FR, Tsui KW: On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. J Comp Biol 2001, 8(1):37-52.
-
(2001)
J Comp Biol
, vol.8
, Issue.1
, pp. 37-52
-
-
Newton, M.A.1
Kendziorski, C.M.2
Richmond, C.S.3
Blattner, F.R.4
Tsui, K.W.5
-
17
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2000, 98(9):5116-5121.
-
(2000)
Proc Natl Acad Sci U S A
, vol.98
, Issue.9
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
18
-
-
0035681150
-
Bayesian estimation of fold-changes in the analysis of gene expression: The PFOLD algorithm
-
Theilhaber J, Bushnell S, Jackson A, Fuchs R: Bayesian estimation of fold-changes in the analysis of gene expression: the PFOLD algorithm. J Comp Biol 2001, 8(6):585-614.
-
(2001)
J Comp Biol
, vol.8
, Issue.6
, pp. 585-614
-
-
Theilhaber, J.1
Bushnell, S.2
Jackson, A.3
Fuchs, R.4
-
19
-
-
2942612362
-
Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays
-
Townsend J: Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays. BMC Bioinformatics 2004, 5(54):.
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.54
-
-
Townsend, J.1
-
20
-
-
0037975700
-
Bayesian analysis of gene expression levels: Statistical quantification of relative mRNA level across multiple strains or treatments
-
Townsend JP, Hard DL: Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments. Genome Biol 2002, 3(12):.
-
(2002)
Genome Biol
, vol.3
, Issue.12
-
-
Townsend, J.P.1
Hard, D.L.2
-
21
-
-
0035875553
-
Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
-
Tseng GC, Oh MK, Rohlin L, Liao JC, Wong WH: Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Res 2001, 29(12):2549-2557.
-
(2001)
Nucleic Acids Res
, vol.29
, Issue.12
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
22
-
-
0037433040
-
Identifying differentially expressed genes using false discovery rate controlling procedures
-
Reiner A, Yekutieli D, Benjamini Y: Identifying differentially expressed genes using false discovery rate controlling procedures. Bioinformatics 2003, 19(3):368-375.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 368-375
-
-
Reiner, A.1
Yekutieli, D.2
Benjamini, Y.3
-
23
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 2002, 18 (Suppl. I):S96-S104.
-
(2002)
Bioinformatics
, Issue.18 SUPPL. I
-
-
Huber, W.1
von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
24
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin BP, Hardin JS, Hawkins DM, Rocke DM: A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics 2002, 18(Suppl. I):S105-S110.
-
(2002)
Bioinformatics
, Issue.18 SUPPL. I
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
25
-
-
0004234657
-
Probability and Statistics
-
Addison Wesley
-
DeGroot MH, Schervish MJ: Probability and Statistics. Addison Wesley; 2002.
-
(2002)
-
-
DeGroot, M.H.1
Schervish, M.J.2
-
26
-
-
0034703060
-
Global gene expression profiling in Escherichia coli K12
-
Arfin S, Long D, Ito E, Tolleri L, Riehle M, Paegle E, Hatfield GW: Global gene expression profiling in Escherichia coli K12. J Biol Chem 2000, 275(38):29672-29684.
-
(2000)
J Biol Chem
, vol.275
, Issue.38
, pp. 29672-29684
-
-
Arfin, S.1
Long, D.2
Ito, E.3
Tolleri, L.4
Riehle, M.5
Paegle, E.6
Hatfield, G.W.7
-
27
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework
-
Long D, Mangalam H, Chan B, Tolleri L, Hatfield GW, Baldi P: Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. J Biol Chem 2001, 276(23):19937-19944.
-
(2001)
J Biol Chem
, vol.276
, Issue.23
, pp. 19937-19944
-
-
Long, D.1
Mangalam, H.2
Chan, B.3
Tolleri, L.4
Hatfield, G.W.5
Baldi, P.6
-
28
-
-
2942640671
-
Statistical analysis of microarray data: A Bayesian approach
-
Gottardo R, Pannucci J, Kuske C, Brettin T: Statistical analysis of microarray data: a Bayesian approach. Biostatistics 2003, 4(4):597-620.
-
(2003)
Biostatistics
, vol.4
, Issue.4
, pp. 597-620
-
-
Gottardo, R.1
Pannucci, J.2
Kuske, C.3
Brettin, T.4
-
29
-
-
0142179210
-
Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays
-
Jain N, Thatte J, Braciale T, Ley K, O'Connell M, Lee J: Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays. Bioinformatics 2003, 19(15):1945-1951.
-
(2003)
Bioinformatics
, vol.19
, Issue.15
, pp. 1945-1951
-
-
Jain, N.1
Thatte, J.2
Braciale, T.3
Ley, K.4
O'Connell, M.5
Lee, J.6
-
30
-
-
14644429669
-
VarMixt: Efficient variance modeling for the differential analysis of replicated gene expression data
-
Delmar P, Robin S, Daudin JJ: VarMixt: efficient variance modeling for the differential analysis of replicated gene expression data. Bioinformatics 2005, 21(4):502-508.
-
(2005)
Bioinformatics
, vol.21
, Issue.4
, pp. 502-508
-
-
Delmar, P.1
Robin, S.2
Daudin, J.J.3
-
31
-
-
84886766873
-
A Bayesian two-sample t-test
-
Fox RJ, Dimmic MW: A Bayesian two-sample t-test. 2006 [http://www.dimmic.net/supplement/].
-
(2006)
-
-
Fox, R.J.1
Dimmic, M.W.2
|