-
1
-
-
29144504177
-
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2005) At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71:7724-7736
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
2
-
-
13844312429
-
Fiber-degrading systems of different strains of the genus Fibrobacter
-
Bera-Maillet C, Ribot Y, Forano E (2004) Fiber-degrading systems of different strains of the genus Fibrobacter. Appl Environ Microbiol 70:2172-2179
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2172-2179
-
-
Bera-Maillet, C.1
Ribot, Y.2
Forano, E.3
-
4
-
-
57649179726
-
Characterization of sulfate-reducing bacteria dominated surface communities during start-up of a down-flow fluidized bed reactor
-
Celis LB, Villa-Gomez D, Alpuche-Solis A, Ortega-Morales BO, Razo-Flores E (2009) Characterization of sulfate-reducing bacteria dominated surface communities during start-up of a down-flow fluidized bed reactor. J Ind Microbiol Biotechnol 36:111-121
-
(2009)
J Ind Microbiol Biotechnol
, vol.36
, pp. 111-121
-
-
Celis, L.B.1
Villa-Gomez, D.2
Alpuche-Solis, A.3
Ortega-Morales, B.O.4
Razo-Flores, E.5
-
7
-
-
0032710938
-
Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria
-
Coates JD, Michaelidou U, Bruce RA, O'Connor SM, Crespi JN, Achenbach LA (1999) Ubiquity and diversity of dissimilatory (per)chlorate-reducing bacteria. Appl Environ Microbiol 65:5234-5241
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 5234-5241
-
-
Coates, J.D.1
Michaelidou, U.2
Bruce, R.A.3
O'Connor, S.M.4
Crespi, J.N.5
Achenbach, L.A.6
-
8
-
-
33846072878
-
The ribosomal database project (RDP-II): Introducing myRDP space and quality controlled public data
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS, McGarrell DM, Bandela AM, Garrity GM, Tiedje JM (2007) The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35:D169-D172
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam-Syed-Mohideen, A.S.5
McGarrell, D.M.6
Bandela, A.M.7
Garrity, G.M.8
Tiedje, J.M.9
-
9
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed-Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37:D141-D145
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
11
-
-
77649221485
-
-
Available from
-
Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R, Stones-Havas S, Thierer T, Wilson A (2009) Geneious v4.8. Available from http://www.geneious. com/
-
(2009)
Geneious v4.8
-
-
Drummond, A.J.1
Ashton, B.2
Cheung, M.3
Heled, J.4
Kearse, M.5
Moir, R.6
Stones-Havas, S.7
Thierer, T.8
Wilson, A.9
-
12
-
-
33746606040
-
Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel Thiothrix eikelboomii-like bulking filament
-
Dumonceaux TJ, Hill JE, Pelletier CP, Paice MG, Van Kessel AG, Hemmingsen SM (2006) Molecular characterization of microbial communities in Canadian pulp and paper activated sludge and quantification of a novel Thiothrix eikelboomii-like bulking filament. Can J Microbiol 52:494-500
-
(2006)
Can J Microbiol
, vol.52
, pp. 494-500
-
-
Dumonceaux, T.J.1
Hill, J.E.2
Pelletier, C.P.3
Paice, M.G.4
Van Kessel, A.G.5
Hemmingsen, S.M.6
-
13
-
-
0005146351
-
Odour control in recycling fiber mills
-
Dyer J (1996) Odour control in recycling fiber mills. Prog Pap Recycl 5:87-90
-
(1996)
Prog Pap Recycl
, vol.5
, pp. 87-90
-
-
Dyer, J.1
-
14
-
-
0035042049
-
The ecology of "fecal indicator" bacteria commonly found in pulp and paper mill water systems
-
Gauthier F, Archibald FS (2001) The ecology of "fecal indicator" bacteria commonly found in pulp and paper mill water systems. Water Res 35:2207-2218
-
(2001)
Water Res
, vol.35
, pp. 2207-2218
-
-
Gauthier, F.1
Archibald, F.S.2
-
15
-
-
0034466652
-
Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems
-
Gauthier F, Neufeld JD, Driscoll BT, Archibald FS (2000) Coliform bacteria and nitrogen fixation in pulp and paper mill effluent treatment systems. Appl Environ Microbiol 66:5155-5160
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5155-5160
-
-
Gauthier, F.1
Neufeld, J.D.2
Driscoll, B.T.3
Archibald, F.S.4
-
16
-
-
8644265813
-
A survey of the composition and diversity of bacterial populations in bleached kraft pulp-mill wastewater secondary treatment systems
-
Gilbride KA, Fulthorpe RR (2004) A survey of the composition and diversity of bacterial populations in bleached kraft pulp-mill wastewater secondary treatment systems. Can J Microbiol 50:633-644
-
(2004)
Can J Microbiol
, vol.50
, pp. 633-644
-
-
Gilbride, K.A.1
Fulthorpe, R.R.2
-
17
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst Biol 42:182-192
-
(1993)
Syst Biol
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
18
-
-
34248195396
-
Community structure of actively growing bacterial populations in plant pathogen suppressive soil
-
Hjort K, Lembke A, Speksnidjer A, Smalla K, Jansson JK (2007) Community structure of actively growing bacterial populations in plant pathogen suppressive soil. Microb Ecol 53:399-413
-
(2007)
Microb Ecol
, vol.53
, pp. 399-413
-
-
Hjort, K.1
Lembke, A.2
Speksnidjer, A.3
Smalla, K.4
Jansson, J.K.5
-
19
-
-
56449127294
-
Diverse and distinct bacterial communities induce biofilm fouling in membrane bioreactors operated under different conditions
-
Huang LN, De Weaver H, Diels L (2008) Diverse and distinct bacterial communities induce biofilm fouling in membrane bioreactors operated under different conditions. Environ Sci Technol 42:8360-8366
-
(2008)
Environ Sci Technol
, vol.42
, pp. 8360-8366
-
-
Huang, L.N.1
De Weaver, H.2
Diels, L.3
-
20
-
-
5044240973
-
Bellerophon; A program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P (2004) Bellerophon; a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
21
-
-
0001387468
-
Biotechnology for solving slime problems in the pulp and paper industry
-
Johnsrud C (1997) Biotechnology for solving slime problems in the pulp and paper industry. Adv Biochem Eng Biotechnol 57:311-328
-
(1997)
Adv Biochem Eng Biotechnol
, vol.57
, pp. 311-328
-
-
Johnsrud, C.1
-
22
-
-
15244345065
-
Abundance of actinobacteria and production of geosmin and 2-methylisoborneol in Danish streams and fish ponds
-
Klausen C, Nicolaisen MH, Strobel BW, Warnecke F, Nielsen JL, Jørgensen NOG (2005) Abundance of actinobacteria and production of geosmin and 2-methylisoborneol in Danish streams and fish ponds. FEMS Microbiol Ecol 52:265-278
-
(2005)
FEMS Microbiol Ecol
, vol.52
, pp. 265-278
-
-
Klausen, C.1
Nicolaisen, M.H.2
Strobel, B.W.3
Warnecke, F.4
Nielsen, J.L.5
Jørgensen, N.O.G.6
-
24
-
-
33746309376
-
Diversity of bacteria contaminating paper machines
-
Lahtinen T, Kosonen M, Tiirola M, Vuento M, Oker-Blom C (2006) Diversity of bacteria contaminating paper machines. J Ind Microbiol Biotechnol 33:734-740
-
(2006)
J Ind Microbiol Biotechnol
, vol.33
, pp. 734-740
-
-
Lahtinen, T.1
Kosonen, M.2
Tiirola, M.3
Vuento, M.4
Oker-Blom, C.5
-
25
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E, Goodfellow M (eds), Wiley, Chichester
-
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acids techniques in bacterial systematics. Wiley, Chichester
-
(1991)
Nucleic Acids Techniques in Bacterial Systematics
-
-
Lane, D.J.1
-
26
-
-
0038242949
-
Control and monitoring of biofilms in industrial applications
-
Ludensky M (2003) Control and monitoring of biofilms in industrial applications. Int Biodeterior Biodegradation 51:255-263
-
(2003)
Int Biodeterior Biodegradation
, vol.51
, pp. 255-263
-
-
Ludensky, M.1
-
27
-
-
29944441585
-
Desulfovibrionalesrelated bacteria in a paper mill environment as detected with molecular techniques and culture
-
Maukonen J, Saarela M, Raaska L (2006) Desulfovibrionalesrelated bacteria in a paper mill environment as detected with molecular techniques and culture. J Ind Microbiol Biotechnol 33:45-54
-
(2006)
J Ind Microbiol Biotechnol
, vol.33
, pp. 45-54
-
-
Maukonen, J.1
Saarela, M.2
Raaska, L.3
-
28
-
-
33645553754
-
Biofilm formation by mycoplasma species and its role in environmental persistance and survival
-
McAuliffe L, Ellis RJ, Miles K, Ayling RD, Nicholas RAJ (2006) Biofilm formation by mycoplasma species and its role in environmental persistance and survival. Microbiol 152:913-922
-
(2006)
Microbiol
, vol.152
, pp. 913-922
-
-
McAuliffe, L.1
Ellis, R.J.2
Miles, K.3
Ayling, R.D.4
Nicholas, R.A.J.5
-
29
-
-
78149358820
-
-
CIPRES [Cyberinfrastructure for Phylogenetic Research]. Website, sections/ portal; archived at http://www.webcitation.org/5imQlJeQa
-
Miller MA, Holder MT, Vos R, Midford PE, Liebowitz T, Chan L, Hoover P, Warnow T (2009) CIPRES [Cyberinfrastructure for Phylogenetic Research]. Website http://www.phylo.org/sub sections/ portal; archived at http://www.webcitation. org/5imQlJeQa
-
(2009)
-
-
Miller, M.A.1
Holder, M.T.2
Vos, R.3
Midford, P.E.4
Liebowitz, T.5
Chan, L.6
Hoover, P.7
Warnow, T.8
-
30
-
-
33846205559
-
Membrane biofouling in pilot-scale Membrane Bioreactors (MBRs) treating municipal wastewater: Impact of biofilm formation
-
Miura Y, Watanabe Y, Okabe S (2007) Membrane biofouling in pilot-scale Membrane Bioreactors (MBRs) treating municipal wastewater: impact of biofilm formation. Environ Sci Technol 41:632-638
-
(2007)
Environ Sci Technol
, vol.41
, pp. 632-638
-
-
Miura, Y.1
Watanabe, Y.2
Okabe, S.3
-
31
-
-
0041912944
-
Isolation and characterization of filamentous bacteria from paper mill slimes
-
Oppong D, King VM, Bowen JA (2003) Isolation and characterization of filamentous bacteria from paper mill slimes. Int Biodeterior Biodeg 52:53-62
-
(2003)
Int Biodeterior Biodeg
, vol.52
, pp. 53-62
-
-
Oppong, D.1
King, V.M.2
Bowen, J.A.3
-
32
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
33
-
-
0032907215
-
Morphological and biochemical properties of a Sphaerotilus sp. isolated from paper mill slimes
-
Pellegrin V, Juretschko S, Wagner M, Cottenceau G (1999) Morphological and biochemical properties of a Sphaerotilus sp. isolated from paper mill slimes. Appl Environ Microbiol 65:156-162
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 156-162
-
-
Pellegrin, V.1
Juretschko, S.2
Wagner, M.3
Cottenceau, G.4
-
34
-
-
17644420369
-
Polysaccharide-producing bacteria isolated from paper machine slime deposits
-
Rättö M, Suihko ML, Siika-aho M (2005) Polysaccharide-producing bacteria isolated from paper machine slime deposits. J Ind Microbiol Biotechnol 32:109-114
-
(2005)
J Ind Microbiol Biotechnol
, vol.32
, pp. 109-114
-
-
Rättö, M.1
Suihko, M.L.2
Siika-Aho, M.3
-
36
-
-
57049106800
-
Role of shear stress on composition, diversity and dynamics of biofilm bacterial communities
-
Rochex A, Godon JJ, Bernet N, Escudie R (2008) Role of shear stress on composition, diversity and dynamics of biofilm bacterial communities. Water Res 42:4915-4922
-
(2008)
Water Res
, vol.42
, pp. 4915-4922
-
-
Rochex, A.1
Godon, J.J.2
Bernet, N.3
Escudie, R.4
-
37
-
-
0037165555
-
Volatile metabolites from Actinomycetes
-
Schöller CEG, Gürtler H, Pedersen R, Molin S, Wilkins K (2002) Volatile metabolites from Actinomycetes. J Agric Food Chem 50:2615-2621
-
(2002)
J Agric Food Chem
, vol.50
, pp. 2615-2621
-
-
Schöller, C.E.G.1
Gürtler, H.2
Pedersen, R.3
Molin, S.4
Wilkins, K.5
-
38
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A (2006) RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:btl446
-
(2006)
Bioinformatics
, vol.22
-
-
Stamatakis, A.1
-
39
-
-
50249100595
-
A fast bootstrapping algorithm for the RAxML web-servers
-
Stamatakis A, Hoover P, Rougemont J (2008) A fast bootstrapping algorithm for the RAxML web-servers. Syst Biol 57:758-771
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
41
-
-
57649233616
-
Characterization of aerobically grown non-spore-forming bacteria from paper mill pulps containing recycled fibres
-
Suihko ML, Skyttä E (2009) Characterization of aerobically grown non-spore-forming bacteria from paper mill pulps containing recycled fibres. J Ind Microbiol Biotechnol 36:53-64
-
(2009)
J Ind Microbiol Biotechnol
, vol.36
, pp. 53-64
-
-
Suihko, M.L.1
Skyttä, E.2
-
43
-
-
0015712606
-
Biological and serological characteristics of the Acholeplasmas
-
Tully JG (1973) Biological and serological characteristics of the Acholeplasmas. Ann N Y Acad Sci 225:74-93
-
(1973)
Ann N y Acad Sci
, vol.225
, pp. 74-93
-
-
Tully, J.G.1
-
44
-
-
0031851909
-
Microbial communities of printing machines
-
Väisänen OM, Weber A, Bennasar A, Rainey FA, Busse HJ, Salkinoja-Salonen MS (1998) Microbial communities of printing machines. J Appl Microbiol 84:1069-1084
-
(1998)
J Appl Microbiol
, vol.84
, pp. 1069-1084
-
-
Väisänen, O.M.1
Weber, A.2
Bennasar, A.3
Rainey, F.A.4
Busse, H.J.5
Salkinoja-Salonen, M.S.6
-
45
-
-
0037027538
-
Structural elucidation of the EPS of slime producing Brevundimonas vesicularis sp. isolated from a paper machine
-
Verhoef R, de Waard P, Schols HA, Rättö M, Siika-aho M, Voragen AGJ (2002) Structural elucidation of the EPS of slime producing Brevundimonas vesicularis sp. isolated from a paper machine. Carbohydr Res 337:1821-1831
-
(2002)
Carbohydr Res
, vol.337
, pp. 1821-1831
-
-
Verhoef, R.1
De Waard, P.2
Schols, H.A.3
Rättö, M.4
Siika-Aho, M.5
Voragen, A.G.J.6
-
46
-
-
21344455103
-
Sugar composition and FT-IR analysis of exopolysaccharides produced by microbial isolates from paper mill slime deposits
-
Verhoef R, Schols HA, Blanco A, Siika-aho M, Rättö M, Buchert J, Lenon G, Voragen AGJ (2005) Sugar composition and FT-IR analysis of exopolysaccharides produced by microbial isolates from paper mill slime deposits. Biotechnol Bioprocess Eng 91:91-105
-
(2005)
Biotechnol Bioprocess Eng
, vol.91
, pp. 91-105
-
-
Verhoef, R.1
Schols, H.A.2
Blanco, A.3
Siika-Aho, M.4
Rättö, M.5
Buchert, J.6
Lenon, G.7
Voragen, A.G.J.8
-
47
-
-
34548293679
-
Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261-5267
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
48
-
-
0034015354
-
Biofilm, city of microbes
-
Watnick P, Kolter R (2000) Biofilm, city of microbes. J Bacteriol 182:2675-2679
-
(2000)
J Bacteriol
, vol.182
, pp. 2675-2679
-
-
Watnick, P.1
Kolter, R.2
-
50
-
-
0002408263
-
What are bacterial extracellular polymeric substances?
-
Wingender J, Neu RT, Flemming HC (eds), Springer, Heidelberg
-
Wingender J, Neu RT, Flemming HC (1999) What are bacterial extracellular polymeric substances? In: Wingender J, Neu RT, Flemming HC (eds) Microbial extracellular polymeric substances: characterization, structure and function. Springer, Heidelberg, pp 1-19
-
(1999)
Microbial Extracellular Polymeric Substances: Characterization, Structure and Function
, pp. 1-19
-
-
Wingender, J.1
Neu, R.T.2
Flemming, H.C.3
-
51
-
-
33646115680
-
Actinomycetes in relation to taste and odour in drinking water: Myths, tenets and truths
-
Zaitlin B, Watson SB (2006) Actinomycetes in relation to taste and odour in drinking water: myths, tenets and truths. Water Res 40:1741-1753
-
(2006)
Water Res
, vol.40
, pp. 1741-1753
-
-
Zaitlin, B.1
Watson, S.B.2
|