Abundance of actinobacteria and production of geosmin and 2-methylisoborneol in Danish streams and fish ponds

FEMS Microbiology Ecology

Volumn 52, Issue 2, 2005, Pages 265-278

  Klausen, Cecilie ^a   Nicolaisen, Mette H ^a   Strobel, Bjarne W ^a   Warnecke, Falk ^b   Nielsen, Jeppe L ^c   Jørgensen, Niels O G ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

^c AALBORG UNIVERSITY   (Denmark)

Author keywords

Actinomycetes; Aquacultures; CARD FISH; Freshwater streams; Geosmin; MIB; Microautoradiography

Indexed keywords

2 METHYLISOBORNEOL; FRESH WATER; GEOSMIN; HYDROGEN; LEUCINE; RIBOSOME RNA; THYMIDINE;

ABUNDANCE; BACTERIUM; BIOGENIC EMISSION; FRESHWATER ENVIRONMENT; ODOR;

ACTINOBACTERIA; AQUACULTURE; ARTICLE; AUTORADIOGRAPHY; BACTERIAL CELL; BACTERIUM ISOLATE; CATALYSIS; CONCENTRATION (PARAMETERS); DENMARK; DENSITY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE SEQUENCE; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; ODOR; POND; PRIORITY JOURNAL; STREAM (RIVER); STREPTOMYCES; WINTER;

DENMARK; EASTERN HEMISPHERE; EURASIA; EUROPE; NORTHERN EUROPE; SCANDINAVIA; WORLD;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); STREPTOMYCES; UNCULTURED ACTINOMYCETE;

EID: 15244345065     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsec.2004.11.015     Document Type: Article

References (45)

1. J.J. Perry, J.T. Staley, and S. Lory Microbial Life 2002 Sinauer Associates Inc Sunderland, MA, USA pp. 1-811
2. F.O. Glöckner, E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, and R. Amann Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria Appl. Environ. Microbiol. 66 2000 5053 5061
3. R. Sekar, A. Pernthaler, J. Pernthaler, F. Warnecke, T. Posch, and R. Amann An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization Appl. Environ. Microbiol. 69 2003 2928 2935
4. J.H. Woo, E. Kitamura, H. Myouga, and Y. Kamei An antifungal protein from the marine bacterium Streptomyces sp. strain AP77 is specific for Pythium porphyrae, a causative agent of red rot disease in Porphyra spp Appl. Environ. Microbiol. 68 2002 2666 2675
5. A. Grein, and S.P. Meyers Growth characteristics., antibiotic production of actinomycetes isolated from littoral sediments and materials suspended in sea water J. Bacteriol. 76 1958 457 463
6. R.W. Schumacher, B.L. Harrigan, and B.S. Davidson Kahakamides A and B, new neosidomycin metabolites from a marine-derived actinomycete Tetrahedron Lett. 42 2001 5133 5135
7. N.K. Kubota, S. Ohta, E. Ohta, F. Koizumi, M. Suzuki, M. Ichimura, E.S. Rahayu, and S. Ikegami Two new analogues of the cytotoxic substance BE-52211 from Streptomyces sp J. Nat. Prod. 67 2004 85 87
8. C.E.G. Scholler, H. Gurtler, R. Pedersen, S. Molin, and K. Wilkins Volatile metabolites from actinomycetes J. Agric. Food Chem. 50 2002 2615 2621
9. V.H. Smith, J. Sieber-Denlinger, F. de Noyelles, S. Campbell, S. Pan, S.J. Randtke, G.T. Blain, and V.A. Strasser Managing taste and odor problems in a eutrophic drinking water reservoir Lake Res. Manage. 18 2002 319 323
10. P. Howgate Tainting of farmed fish by geosmin and 2-methyl-iso-borneol: a review of sensory aspects and of uptake/depuration Aquaculture 234 2004 155 181
11. Robertson, R.F. and Lawton, L.A. (2003) Off-flavor problems and a potential solution within the UK trout industry. ACS Symposium Series: off-flavors in aquaculture, pp. 55-68
12. Q. Hu, M. Sommerfeld, L. Baker, and P. Westerhoff Canal wall brushing - a control measure for taste and odour problems in drinking water supplies in and environments J. Water. Supply Res. Technol. - Aqua 52 2003 545 554
13. G. Izaguirre, and W.D. Taylor A Pseudanabaena species from Castaic Lake, California, that produces 2-methylisoborneol Water Res. 32 1998 1673 1677
14. M. Durrer, U. Zimmermann, and F. Juttner Dissolved and particle-bound geosmin in a mesotrophic lake (Lake Zurich): spatial and seasonal distribution and the effect of grazers Water Res. 33 1999 3628 3636
15. E. Lanciotti, C. Santini, E. Lupi, and D. Burrini Actinomycetes, cyanobacteria and algae causing tastes and odours in water of the River Arno used for the water supply of Florence J. Water. Supply Res. Technol. - Aqua 52 2003 489 500
16. Klausen, C., Jørgensen, N.O.G., Nybroe, O., Strobel, B.W. and Warnecke, F. (2003) The occurrence of actinomycetes and geosmin in freshwater aquacultures in Denmark. American Society for Microbiology Abstracts 2003, pp. 409
17. T.R. Thomsen, B.V. Kjellerup, J.L. Nielsen, P. Hugenholtz, and P.H. Nielsen In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth Environ. Microbiol. 4 2002 383 391
18. J.A. Fuhrman, J.W. Ammerman, and F. Azam Bacterioplankton in the coastal euphotic zone: distribution, activity and possible relationships with phytoplankton Mar. Biol. 60 1980 201 207
19. 3H-leucine Mar. Microb. Food Webs 6 1992 107 114
20. 3H]thymidine incorporation with freshwater bacteria Appl. Environ. Microbiol. 54 1988 2213 2219
21. U. Edwards, T. Rogall, H. Blocker, M. Emde, and E.C. Bottger Isolation and direct complete nucleotide determination of entire genes - characterization of a gene coding for 16S-ribosomal RNA Nucleic Acids Res. 17 1989 7843 7853
22. D.J. Lane 16S/23S rRNA sequencing E. Stackebrandt M. Goodfellow Nucleic Acid Techniques in Bacterial Systematics 1991 Wiley New York 115 175
23. G. Muyzer, T. Brinkhoff, U. Nübel, C. Santegoeds, H. Schäfer, and C. Wawer Denaturing gradient gel electrophoresis (DGGE) in microbial ecology A.D.L. Akkermans J.D. van Elsas F.J. de Bruijn Molecular Microbial Ecology Manual 1998 Kluwer Academic Publishers Dordrecht 1 27
24. S.F. Altschul, W. Gish, W. Miller, E.W. Meyers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
25. J.L. Nielsen, S. Juretschko, M. Wagner, and P.H. Nielsen Abundance and phylogenetic affiliation of iron reducers in activated sludge as assessed by fluorescence in situ hybridization and microautoradiography Appl. Environ. Microbiol. 68 2002 4629 4636
26. N. Lee, P.H. Nielsen, K.H. Andreasen, S. Juretschko, J.L. Nielsen, K.H. Schleifer, and M. Wagner Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology Appl. Environ. Microbiol. 65 1999 1289 1297
27. A. Pernthaler, J. Pernthaler, and R. Amann Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria Appl. Environ. Microbiol. 68 2002 3094 3101
28. A. Saito, T. Tokuyama, A. Tanaka, T. Oritani, and K. Fuchigami Microbiological degradation of geosmin Water Res. 33 1999 3033 3036
29. D.J. Burdige, and S.L. Zheng The biogeochemical cycling of dissolved organic nitrogen in estuarine sediments Limnol. Oceanogr. 43 1998 1796 1813
30. H. Rheims, A. Felske, S. Seufert, and E. Stackebrandt Molecular monitoring of an uncultured group of the class Actinobacteria in two terrestrial environments J. Microbiol. Meth. 36 1999 65 75
31. R.J. Davenport, T.P. Curtis, M. Goodfellow, F.M. Stainsby, and M. Bingley Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants Appl. Environ. Microbiol. 66 2000 1158 1166
32. L. Thirup, K. Johnsen, and A. Winding Succession of indigenous Pseudomonas spp. and actinomycetes on barley roots affected by the antagonistic strain Pseudomonas fluorescens DR54 and the fungicide Imazalil Appl. Environ. Microbiol. 67 2001 1147 1153
33. M.A. Pisano, M.J. Sommer, and L. Taras Bioactivity of chitinolytic actinomycetes of marine origin Appl. Microbiol. Biotechnol. 36 1992 553 555
34. S.M. Tiquia, J.H.C. Wan, and N.F.Y. Tam Microbial population dynamics and enzyme activities during composting Compost Sci. Util. 10 2002 150 161
35. U. Burkert, F. Warnecke, D. Babenzien, E. Zwirnmann, and J. Pernthaler Members of a readily enriched β-proteobacterial clade are common in surface waters of a humic lake Appl. Environ. Microbiol. 69 2003 6550 6559
36. F.C. Pollak, and R.G. Berger Geosmin and related volatiles in bioreactor-cultured Streptomyces citreus CBS 109.60 Appl. Environ. Microbiol. 62 1996 1295 1299
37. C.P. Dionigi, D.F. Millie, A.M. Spanier, and P.B. Johnsen Spore and geosmin production by Streptomyces tendae on several media J. Agric. Food Chem. 40 1992 122 125
38. K.K. Schrader, and W.T. Blevins Effects of carbon source, phosphorus concentration, and several micronutrients on biomass and geosmin production by Streptomyces halstedii J. Ind. Microbiol. Biotechnol. 26 2001 241 247
39. B. Gust, G.L. Challis, K. Fowler, T. Kieser, and K.F. Chater PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin Proc. Natl. Acad. Sci. USA 100 2003 1541 1546
40. K. Aoyama, B. Tomita, and K. Chaya Influence of incubation-temperature on production of earthy-musty odor substances by actinomycetes Jpn. J. Toxicol. Environ. Health 39 1993 207 212
41. N. Sugiura, and K. Nakano Causative microorganisms for musty odor occurrence in the eutrophic Lake Kasumigaura Hydrobiologia 434 2000 145 150
42. B. Zaitlin, S.B. Watson, J. Dixon, and D. Steel Actinomycetes in the Elbow River basin, Alberta, Canada Water Qual. Res. J. Can. 38 2003 115 125
43. D.E. Cane, and R.M. Watt Expression and mechanistic analysis of a germacradienol synthase from Streptomyces coelicolor implicated in geosmin biosynthesis Proc. Natl. Acad. Sci. USA 100 2003 1547 1551
44. I. Saadoun, and F. El Migdadi Degradation of geosmin-like compounds by selected species of Gram-positive bacteria Lett. Appl. Microbiol. 26 1998 98 100
45. A. Tanaka, T. Oritani, F. Uehara, A. Saito, H. Kishita, Y. Niizeki, H. Yokota, and K. Fuchigami Biodegradation of a musty odour component, 2-methylisoborneol Water Res. 30 1996 759 761