-
1
-
-
0036645099
-
Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men
-
Adam, B.-L., Qu, Y., Davis, J. W., Ward, M. D., Clements, M. A., Cazares, L. H., Semmes, O. J., Schellhammer, P. F., Yasui, Y., Feng, Z., and Wright, G. L., Jr., Serum protein fingerprinting coupled with a pattern-matching algorithm distinguishes prostate cancer from benign prostate hyperplasia and healthy men, Cancer Research 62, 3609-3614 (2002).
-
(2002)
Cancer Research
, vol.62
, pp. 3609-3614
-
-
Adam, B.-L.1
Qu, Y.2
Davis, J.W.3
Ward, M.D.4
Clements, M.A.5
Cazares, L.H.6
Semmes, O.J.7
Schellhammer, P.F.8
Yasui, Y.9
Feng, Z.10
Wright, G.L.11
-
2
-
-
0037945658
-
Proteomics-advances, applications and the challenges that remain
-
Aebersold, R., and Cravatt, B. F., Proteomics-advances, applications and the challenges that remain, Trends in Biotechnology 20, S1-S2 (2002).
-
(2002)
Trends in Biotechnology
, vol.20
, pp. S1-S2
-
-
Aebersold, R.1
Cravatt, B.F.2
-
3
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., and Mann, M., Mass spectrometry-based proteomics, Nature 422, 198-207 (2003).
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
4
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
Anderson, N. L., and Anderson, N. G., The human plasma proteome: History, character, and diagnostic prospects, Molecular and Cellular Proteomics 1, 845-867 (2002).
-
(2002)
Molecular and Cellular Proteomics
, vol.1
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
5
-
-
0038574979
-
Ion suppression in mass spectrometry
-
Annesley, T. M., Ion suppression in mass spectrometry, Clinical Chemistry 49, 1041-1044 (2003).
-
(2003)
Clinical Chemistry
, vol.49
, pp. 1041-1044
-
-
Annesley, T.M.1
-
6
-
-
0027453616
-
Model-based Gaussian and non-Gaussian clustering
-
Banfield, J. D., and Raftery, A. E., Model-based Gaussian and non-Gaussian clustering, Biometrics 49, 803-821 (1993).
-
(1993)
Biometrics
, vol.49
, pp. 803-821
-
-
Banfield, J.D.1
Raftery, A.E.2
-
7
-
-
0023399896
-
Characterization by tandem mass spectrometry of structural modifications in proteins
-
Biemann, K., and Scoble, H. A., Characterization by tandem mass spectrometry of structural modifications in proteins, Science 237, 992-998 (1987).
-
(1987)
Science
, vol.237
, pp. 992-998
-
-
Biemann, K.1
Scoble, H.A.2
-
8
-
-
0003802343
-
-
Wadsworth, Belmont, CA
-
Brieman, L., Friedman, J., Olshen, R., and Stone, C, Classification and Regression Trees, Wadsworth, Belmont, CA, 1984.
-
(1984)
Classification and Regression Trees
-
-
Brieman, L.1
Friedman, J.2
Olshen, R.3
Stone, C.4
-
10
-
-
0141720418
-
Protein arrays and their role in proteomics
-
Cahill, D. J., and Nordhoff, E., Protein arrays and their role in proteomics, Advances in Biochemical Engineering and Biotechnology 83, 177-187 (2003).
-
(2003)
Advances in Biochemical Engineering and Biotechnology
, vol.83
, pp. 177-187
-
-
Cahill, D.J.1
Nordhoff, E.2
-
11
-
-
0030466254
-
Using matrix convolution filters to extract information from time-of-flight mass spectra
-
Carroll, J. A., and Beavis, R. C, Using matrix convolution filters to extract information from time-of-flight mass spectra, Rapid Commununications in Mass Spectrometry 13, 1683-1687 (1996).
-
(1996)
Rapid Commununications in Mass Spectrometry
, vol.13
, pp. 1683-1687
-
-
Carroll, J.A.1
Beavis, R.C.2
-
12
-
-
0036129913
-
Informatic tools for proteome profiling
-
Ciphergen Biosystems, Inc., ProteinChip Product Literature
-
Chakravarti, D. N., Chakravarti, B., and Moutsatsos, I., Informatic tools for proteome profiling, Biotechniques (Suppl), 4-10, 12-15 (2002). Ciphergen Biosystems, Inc., ProteinChip Product Literature, http://www.ciphergen.com/products/pc/.
-
(2002)
Biotechniques
-
-
Chakravarti, D.N.1
Chakravarti, B.2
Moutsatsos, I.3
-
13
-
-
0038010686
-
Array-based technologies and their applications in proteomics
-
Chen, G. Y., Uttamchandani, M., Lue, R. Y., Lesaicherrea, M. L., and Yao, S. Q., Array-based technologies and their applications in proteomics, Current Topics in Medical Chemistry 3, 705-724 (2003).
-
(2003)
Current Topics in Medical Chemistry
, vol.3
, pp. 705-724
-
-
Chen, G.Y.1
Uttamchandani, M.2
Lue, R.Y.3
Lesaicherrea, M.L.4
Yao, S.Q.5
-
14
-
-
0038135024
-
Computational analyses of high-throughput protein-protein interaction data
-
Chen, Y., and Xu, D., Computational analyses of high-throughput protein-protein interaction data, Current Protein and Peptide Science 4, 159-81 (2003).
-
(2003)
Current Protein and Peptide Science
, vol.4
, pp. 159-181
-
-
Chen, Y.1
Xu, D.2
-
15
-
-
0028429419
-
Protein identification by peptide mass fingerprinting
-
Cottrell, J. S., Protein identification by peptide mass fingerprinting, Peptide Research 7, 115-124 (1994).
-
(1994)
Peptide Research
, vol.7
, pp. 115-124
-
-
Cottrell, J.S.1
-
16
-
-
0003798635
-
-
Cambridge University Press, New York
-
Cristianini, N., and Shawe-Taylor, J., An Introduction to Support Vector Machines and Other Kernel-Based Learning Methods, Cambridge University Press, New York, 2000.
-
(2000)
An Introduction to Support Vector Machines and Other Kernel-Based Learning Methods
-
-
Cristianini, N.1
Shawe-Taylor, J.2
-
18
-
-
0036043232
-
Protein array technology: The tool to bridge genomics and proteomics
-
Eickhoff, H., Konthur, Z., Lueking, A., Lehrach, H., Walter, G, Nordhoff, E., Nyarsik, L., and Bussow, K., Protein array technology: The tool to bridge genomics and proteomics, Advances in Biochemical Engineering and Biotechnology 11, 103-112 (2002).
-
(2002)
Advances in Biochemical Engineering and Biotechnology
, vol.11
, pp. 103-112
-
-
Eickhoff, H.1
Konthur, Z.2
Lueking, A.3
Lehrach, H.4
Walter, G.5
Nordhoff, E.6
Nyarsik, L.7
Bussow, K.8
-
19
-
-
0012574002
-
Affinity-capture reagents for protein arrays
-
Elia, G., Silacci, M., Scheurer, S., Scheuermann, J., and Neri, D., Affinity-capture reagents for protein arrays, Trends in Biotechnology 20, S19-S22 (2002).
-
(2002)
Trends in Biotechnology
, vol.20
, pp. S19-S22
-
-
Elia, G.1
Silacci, M.2
Scheurer, S.3
Scheuermann, J.4
Neri, D.5
-
20
-
-
0024438708
-
Electrospray ionization for mass spectrometry of large biomolecules
-
Fenn, J. B., Mann, M., Meng, C. K., Wong, S. F., and Whitehouse, C. M., Electrospray ionization for mass spectrometry of large biomolecules, Science 246, 64-71 (1989).
-
(1989)
Science
, vol.246
, pp. 64-71
-
-
Fenn, J.B.1
Mann, M.2
Meng, C.K.3
Wong, S.F.4
Whitehouse, C.M.5
-
21
-
-
0037607633
-
Informatics and data management in proteomics
-
Fenyo, D., and Beavis, R. C, Informatics and data management in proteomics, Trends in Biotechnology 20, S35-S38 (2002).
-
(2002)
Trends in Biotechnology
, vol.20
, pp. S35-S38
-
-
Fenyo, D.1
Beavis, R.C.2
-
22
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
Fields, S., and Song, O., A novel genetic system to detect protein-protein interactions, Nature 340, 245-246 (1989).
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
23
-
-
0037442466
-
Enrichment of low-abundance brain proteins by preparative electrophoresis
-
Fountoulakis, M., and Juranville, J. F., Enrichment of low-abundance brain proteins by preparative electrophoresis, Analytical Biochemistry 313, 267-282 (2003).
-
(2003)
Analytical Biochemistry
, vol.313
, pp. 267-282
-
-
Fountoulakis, M.1
Juranville, J.F.2
-
24
-
-
0006441254
-
-
Technical Report No. 342, University of Washington, Seattle, WA
-
Fraley, C, and Raftery, A. E., MCLUST: Software for Model-Based Cluster and Discriminant Analysis, Technical Report No. 342, University of Washington, Seattle, WA, 1998.
-
(1998)
MCLUST: Software for Model-Based Cluster and Discriminant Analysis
-
-
Fraley, C.1
Raftery, A.E.2
-
25
-
-
0036761724
-
High-density synthetic peptide microarrays: Emerging tools for functional genomics and proteomics
-
Frank, R., High-density synthetic peptide microarrays: Emerging tools for functional genomics and proteomics, Combinatorial Chemistry and High Throughput Screening 5, 429-440 (2002).
-
(2002)
Combinatorial Chemistry and High Throughput Screening
, vol.5
, pp. 429-440
-
-
Frank, R.1
-
26
-
-
0032694167
-
A sampling of the yeast proteome
-
Futcher, B., Latter, G. I., Monardo, P., McLaughlin, C. S., and Garrels, J. I., A sampling of the yeast proteome, Molecular and Cellular Biology 19, 7357-7768 (1999).
-
(1999)
Molecular and Cellular Biology
, vol.19
, pp. 7357-7768
-
-
Futcher, B.1
Latter, G.I.2
Monardo, P.3
McLaughlin, C.S.4
Garrels, J.I.5
-
27
-
-
0004012196
-
-
CRC Press, Boca Raton, FL
-
Gelman, A., Carlin, J. B., Stem, H. S., and Rubin, D. B., Bayesian Data Analysis, CRC Press, Boca Raton, FL, (2003).
-
(2003)
Bayesian Data Analysis
-
-
Gelman, A.1
Carlin, J.B.2
Stem, H.S.3
Rubin, D.B.4
-
28
-
-
0042568934
-
Proteomics technologies: Probing the proteome
-
Gershon, D., Proteomics technologies: Probing the proteome, Nature 424, 581-587 (2003).
-
(2003)
Nature
, vol.424
, pp. 581-587
-
-
Gershon, D.1
-
29
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub, T. R., Slonim, D. K., Tamayo, P., Huard, C, Gaasenbeek, M., Mesirov, J. P., Coller, H., Loh, M. L., Downing, J. R., Caligiuri, M. A., Bloomfield, C. D., and Lander, E. S., Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring, Science 286, 531-537 (1999).
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
30
-
-
0003626435
-
-
Addision-Wesley, Reading, MA
-
Gonzalez, R. C, and Woods, R. E., Digital Image Processing, Addision-Wesley, Reading, MA, 2002.
-
(2002)
Digital Image Processing
-
-
Gonzalez, R.C.1
Woods, R.E.2
-
31
-
-
0012253253
-
Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis
-
Goshe, M. B., Blonder, J., and Smith, R. D., Affinity labeling of highly hydrophobic integral membrane proteins for proteome-wide analysis, Journal of Proteome Research 2, 153-161 (2003).
-
(2003)
Journal of Proteome Research
, vol.2
, pp. 153-161
-
-
Goshe, M.B.1
Blonder, J.2
Smith, R.D.3
-
32
-
-
0035676769
-
Computational aspects of protein identification by mass spectrometry
-
Gras, R., and Muller, M., Computational aspects of protein identification by mass spectrometry, Current Opinion in Molecular Therapeutics 3, 526-532 (2001).
-
(2001)
Current Opinion in Molecular Therapeutics
, vol.3
, pp. 526-532
-
-
Gras, R.1
Muller, M.2
-
33
-
-
0037442315
-
Abundance ratio-dependent proteomic analysis by mass spectrometry
-
Griffin, T. J., Lock, C. M., Li, X. J., Patel, A., Chervetsova, I., Lee, H., Wright, M. E., Ranish, J. A., Chen, S. S., and Aebersold, R., Abundance ratio-dependent proteomic analysis by mass spectrometry, Analytical Chemistry 75, 867-874 (2003).
-
(2003)
Analytical Chemistry
, vol.75
, pp. 867-874
-
-
Griffin, T.J.1
Lock, C.M.2
Li, X.J.3
Patel, A.4
Chervetsova, I.5
Lee, H.6
Wright, M.E.7
Ranish, J.A.8
Chen, S.S.9
Aebersold, R.10
-
34
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S. P., Rochon, Y., Franza, B. R., and Aebersold, R., Correlation between protein and mRNA abundance in yeast, Molecular and Cellular Biology 19, 1720-1730 (1999a) .
-
(1999)
Molecular and Cellular Biology
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
35
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags, Nature Biotechnology 17, 994-999 (1999b) .
-
(1999)
Nature Biotechnology
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
36
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y., and Aebersold, R., Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology, Proceedings National Academy of Sciences USA, 97, 9390-9395 (2000).
-
(2000)
Proceedings National Academy of Sciences USA
, vol.97
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
Rochon, Y.4
Aebersold, R.5
-
37
-
-
0037434981
-
Disease proteomics
-
Hanash, S., Disease proteomics, Nature 422, 226-232 (2003).
-
(2003)
Nature
, vol.422
, pp. 226-232
-
-
Hanash, S.1
-
38
-
-
0038282915
-
Publishing large proteome datasets: Scientific policy meets emerging technologies
-
Hancock, W. S., Wu, S. L., Stanley, R. R., and Gombocz, E. A., Publishing large proteome datasets: Scientific policy meets emerging technologies, Trends in Biotechnology 20, S39-S44 (2002).
-
(2002)
Trends in Biotechnology
, vol.20
, pp. S39-S44
-
-
Hancock, W.S.1
Wu, S.L.2
Stanley, R.R.3
Gombocz, E.A.4
-
39
-
-
0003684449
-
-
Springer-Verlag, Berlin
-
Hastie, T., Tibshirani, R., and Friedman, J. H., Elements of Statistical Learning, Springer-Verlag, Berlin, 2001.
-
(2001)
Elements of Statistical Learning
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.H.3
-
40
-
-
0027198862
-
Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
-
Henzel, W. J., Billeci, T. M., Stults, J. T., Wong, S. C, Grimley, C, and Watanabe, C, Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases, Proceedings National Academy of Sciences USA 90, 5011-5015 (1993).
-
(1993)
Proceedings National Academy of Sciences USA
, vol.90
, pp. 5011-5015
-
-
Henzel, W.J.1
Billeci, T.M.2
Stults, J.T.3
Wong, S.C.4
Grimley, C.5
Watanabe, C.6
-
41
-
-
0141520564
-
Identification and validation of a potential lung cancer serum biomarker detected by matrix-assisted laser desorption/ionization time of flight spectra analysis
-
Howard, B. A., Wang, M. A., Campa, M. J., Corro, C, Fitzgerald, M. C, and Patz, E. F., Jr., Identification and validation of a potential lung cancer serum biomarker detected by matrix-assisted laser desorption/ionization time of flight spectra analysis, Proteomics 3, 1720-1724 (2003).
-
(2003)
Proteomics
, vol.3
, pp. 1720-1724
-
-
Howard, B.A.1
Wang, M.A.2
Campa, M.J.3
Corro, C.4
Fitzgerald, M.C.5
Patz, E.F.6
-
42
-
-
0000312004
-
Protein sequencing by tandem mass spectrometry
-
Hunt, D. F., Yates, J. R., 3rd, Shabanowitz, J., Winston, S., and Hauer, C. R., Protein sequencing by tandem mass spectrometry, Proceedings National Academy of Sciences USA 83, 6233-6237 (1986).
-
(1986)
Proceedings National Academy of Sciences USA
, vol.83
, pp. 6233-6237
-
-
Hunt, D.F.1
Yates, J.R.2
Shabanowitz, J.3
Winston, S.4
Hauer, C.R.5
-
43
-
-
0038607034
-
Nano-high-performance liquid chromatography in combination with nano-electrospray ionization Fourier transform ion-cyclotron resonance mass spectrometry for proteome analysis
-
Ihling, C, Berger, K., Hofliger, M. M., Fuhrer, D., Beck-Sickinger, A. G., and Sinz, A., Nano-high-performance liquid chromatography in combination with nano-electrospray ionization Fourier transform ion-cyclotron resonance mass spectrometry for proteome analysis, Rapid Communications in Mass Spectrometry 17, 1240-1246 (2003).
-
(2003)
Rapid Communications in Mass Spectrometry
, vol.17
, pp. 1240-1246
-
-
Ihling, C.1
Berger, K.2
Hofliger, M.M.3
Fuhrer, D.4
Beck-Sickinger, A.G.5
Sinz, A.6
-
44
-
-
0037307787
-
Chemical proteomics and its application to drug discovery
-
Jeffery, D. A., and Bogyo, M., Chemical proteomics and its application to drug discovery, Current Opinion in Biotechnology 14, 87-95 (2003).
-
(2003)
Current Opinion in Biotechnology
, vol.14
, pp. 87-95
-
-
Jeffery, D.A.1
Bogyo, M.2
-
46
-
-
0345354678
-
Detection of secreted peptides by using hypothesis-driven multistage mass spectrometry
-
Kalkum, M., Lyon, G. J., and Chait, B. T., Detection of secreted peptides by using hypothesis-driven multistage mass spectrometry, Proceedings National Academy of Sciences USA 100, 2795-2800 (2003).
-
(2003)
Proceedings National Academy of Sciences USA
, vol.100
, pp. 2795-2800
-
-
Kalkum, M.1
Lyon, G.J.2
Chait, B.T.3
-
47
-
-
0024289037
-
Laser desoiption ionization of proteins with molecular masses exceeding 10,000 daltons
-
Karas, M., and Hillenkamp, F., Laser desoiption ionization of proteins with molecular masses exceeding 10,000 daltons, Analytical Chemistry 60, 2299-2301 (1988).
-
(1988)
Analytical Chemistry
, vol.60
, pp. 2299-2301
-
-
Karas, M.1
Hillenkamp, F.2
-
48
-
-
84950934893
-
Bayes factors
-
Kass, R. E., and Raftery, A. E., Bayes factors, Journal of the American Statistical Association 90, 773-795 (1995).
-
(1995)
Journal of the American Statistical Association
, vol.90
, pp. 773-795
-
-
Kass, R.E.1
Raftery, A.E.2
-
49
-
-
0042665900
-
Multiplex proteomic analysis by two-dimensional differential in-gel electrophoresis
-
Knowles, M. R., Cervino, S., Skynner, H. A., Hunt, S. P., de Felipe, C, Salim, K., Meneses-Lorente, G., McAllister, G., and Guest, P. C, Multiplex proteomic analysis by two-dimensional differential in-gel electrophoresis, Proteomics 3, 1162-1171 (2003).
-
(2003)
Proteomics
, vol.3
, pp. 1162-1171
-
-
Knowles, M.R.1
Cervino, S.2
Skynner, H.A.3
Hunt, S.P.4
De Felipe, C.5
Salim, K.6
Meneses-Lorente, G.7
McAllister, G.8
Guest, P.C.9
-
50
-
-
0038094486
-
Size-exclusion chromatography in multidimensional separation schemes for proteome analysis
-
Lecchi, P., Gupte, A. R., Perez, R. E., Stockert, L. V., and Abramson, F. P., Size-exclusion chromatography in multidimensional separation schemes for proteome analysis, Journal of Biochemical and Biophysical Methods 56, 141-152 (2003).
-
(2003)
Journal of Biochemical and Biophysical Methods
, vol.56
, pp. 141-152
-
-
Lecchi, P.1
Gupte, A.R.2
Perez, R.E.3
Stockert, L.V.4
Abramson, F.P.5
-
51
-
-
0036324715
-
Proteomics and bioin-formatics approaches for identification of serum biomarkers to detect breast cancer
-
Li, J., Zhang, Z., Rosenzweig, J., Wang, Y. Y., and Chan, D. W., Proteomics and bioin-formatics approaches for identification of serum biomarkers to detect breast cancer, Clinical Chemistry 48(8), 1296-1304 (2002).
-
(2002)
Clinical Chemistry
, vol.48
, Issue.8
, pp. 1296-1304
-
-
Li, J.1
Zhang, Z.2
Rosenzweig, J.3
Wang, Y.Y.4
Chan, D.W.5
-
52
-
-
0012573999
-
Multidimensional peptide separations in proteomics
-
Link, A. J., Multidimensional peptide separations in proteomics, Trends in Biotechnology 20, S8-13 (2002).
-
(2002)
Trends in Biotechnology
, vol.20
, pp. S8-S13
-
-
Link, A.J.1
-
53
-
-
0037176208
-
Multidimensional chromatography coupled to electrospray ionization time-of-flight mass spectrometry as an alternative to two-dimensional gels for the identification and analysis of complex mixtures of intact proteins
-
Liu, H, Berger, S. J., Chakraborty, A. B., Plumb, R. S., and Cohen, S. A., Multidimensional chromatography coupled to electrospray ionization time-of-flight mass spectrometry as an alternative to two-dimensional gels for the identification and analysis of complex mixtures of intact proteins, Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences 782, 267-289 (2002a) .
-
(2002)
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences
, vol.782
, pp. 267-289
-
-
Liu, H.1
Berger, S.J.2
Chakraborty, A.B.3
Plumb, R.S.4
Cohen, S.A.5
-
54
-
-
0036219327
-
Multidimensional separations for protein/peptide analysis in the post-genomic era
-
passim
-
Liu, H., Lin, D., and Yates, J. R., 3rd, Multidimensional separations for protein/peptide analysis in the post-genomic era, Biotechniques 32, 898, 900, 902 passim (2002b) .
-
(2002)
Biotechniques
, vol.32
-
-
Liu, H.1
Lin, D.2
Yates, J.R.3
-
55
-
-
0036766944
-
An isotope coding strategy for proteomics involving both amine and carboxyl group labeling
-
Liu, P., and Regnier, F. E., An isotope coding strategy for proteomics involving both amine and carboxyl group labeling, Journal of Proteome Research 1, 443-450 (2002).
-
(2002)
Journal of Proteome Research
, vol.1
, pp. 443-450
-
-
Liu, P.1
Regnier, F.E.2
-
56
-
-
0036898579
-
Protein microarrays and proteomics
-
MacBeath, G., Protein microarrays and proteomics, Nature Genetics 32(Suppl), 526-532 (2002).
-
(2002)
Nature Genetics
, vol.32
, pp. 526-532
-
-
MacBeath, G.1
-
57
-
-
0035490199
-
Protein based microarrays: A tool for probing the proteome of cancer cells and tissues
-
Madoz-Gurpide, J., Wang, H., Misek, D. E., Brichory, F., and Hanash, S. M., Protein based microarrays: A tool for probing the proteome of cancer cells and tissues, Proteomics 1, 1279-1287 (2001).
-
(2001)
Proteomics
, vol.1
, pp. 1279-1287
-
-
Madoz-Gurpide, J.1
Wang, H.2
Misek, D.E.3
Brichory, F.4
Hanash, S.M.5
-
58
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
Mann, M., Hendrickson, R. C, and Pandey, A., Analysis of proteins and proteomes by mass spectrometry, Annual Review of Biochemistry 70, 437-473 (2001).
-
(2001)
Annual Review of Biochemistry
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
59
-
-
0036399228
-
Shotgun proteomics and biomarker discovery
-
McDonald, W. H., and Yates, J. R., 3rd, Shotgun proteomics and biomarker discovery, Disease Markers 18, 99-105 (2002).
-
(2002)
Disease Markers
, vol.18
, pp. 99-105
-
-
McDonald, W.H.1
Yates, J.R.2
-
60
-
-
0034013944
-
Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry
-
Merchant, M., and Weinberger, S. R., Recent advancements in surface-enhanced laser desorption/ionization-time of flight-mass spectrometry, Electrophoresis 21, 1164-1177 (2000).
-
(2000)
Electrophoresis
, vol.21
, pp. 1164-1177
-
-
Merchant, M.1
Weinberger, S.R.2
-
63
-
-
0038280158
-
Gene arrays and proteomics. A primer
-
Mouledous, L., and Gutstein, H. B., Gene arrays and proteomics. A primer, Methods in Molecular Medicine 84, 141-54 (2003).
-
(2003)
Methods in Molecular Medicine
, vol.84
, pp. 141-154
-
-
Mouledous, L.1
Gutstein, H.B.2
-
64
-
-
0034012952
-
Biosensor chip mass spectrometry: A chip-based proteomics approach
-
Nelson, R. W., Nedelkov, D., and Tubbs, K. A., Biosensor chip mass spectrometry: A chip-based proteomics approach, Electrophoresis 21, 1155-63 (2000).
-
(2000)
Electrophoresis
, vol.21
, pp. 1155-1163
-
-
Nelson, R.W.1
Nedelkov, D.2
Tubbs, K.A.3
-
65
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y., Huang, K., Cross, F. R., Cowbum, D., and Chait, B. T., Accurate quantitation of protein expression and site-specific phosphorylation, Proceedings National Academy of Sciences USA 96, 6591-6596 (1999).
-
(1999)
Proceedings National Academy of Sciences USA
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowbum, D.4
Chait, B.T.5
-
66
-
-
0037112383
-
Prediction of chromatographic retention and protein identification in liquid chromatogra-phy/mass spectrometry
-
Palmblad, M., Ramstrom, M., Markides, K. E., Hakansson, P., and Bergquist, J., Prediction of chromatographic retention and protein identification in liquid chromatogra-phy/mass spectrometry, Analytical Chemistry 74, 5826-5830 (2002).
-
(2002)
Analytical Chemistry
, vol.74
, pp. 5826-5830
-
-
Palmblad, M.1
Ramstrom, M.2
Markides, K.E.3
Hakansson, P.4
Bergquist, J.5
-
67
-
-
0034659815
-
Proteomics to study genes and genomes
-
Pandey, A., and Mann, M., Proteomics to study genes and genomes, Nature 405, 837-846 (2000).
-
(2000)
Nature
, vol.405
, pp. 837-846
-
-
Pandey, A.1
Mann, M.2
-
68
-
-
0037116832
-
Use of proteomic patterns in serum to identify ovarian cancer
-
Supplemental information at web site
-
Perticoin, E. F., Ill, Ardekani, A. M., Hitt, B. A., Levine, P. J., Fusaro, V. A., Steinberg, S. M., Mills, G. B., Simone, C, Fishman, D. A., Kohn, E. C, and Liotta, L. A., Use of proteomic patterns in serum to identify ovarian cancer, Lancet 359, 572-577 (2002). Supplemental information at web site, http://clinicalproteomics.steem.com.
-
(2002)
Lancet
, vol.359
, pp. 572-577
-
-
Perticoin, E.F.1
Ardekani, A.M.2
Hitt, B.A.3
Levine, P.J.4
Fusaro, V.A.5
Steinberg, S.M.6
Mills, G.B.7
Simone, C.8
Fishman, D.A.9
Kohn, E.C.10
Liotta, L.A.11
-
69
-
-
0037387175
-
Multi-component immunoaffinity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome
-
Pieper, R., Su, Q., Gatlin, C. L., Huang, S. T., Anderson, N. L., and Steiner, S., Multi-component immunoaffinity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome, Proteomics 3, 422-432 (2003).
-
(2003)
Proteomics
, vol.3
, pp. 422-432
-
-
Pieper, R.1
Su, Q.2
Gatlin, C.L.3
Huang, S.T.4
Anderson, N.L.5
Steiner, S.6
-
70
-
-
0037265803
-
Spot overlapping in two-dimensional polyacrylamide gel electrophoresis maps: Relevance to proteomics
-
Pietrogrande, M. C, Marchetti, N., Dondi, F., and Righetti, P. G., Spot overlapping in two-dimensional polyacrylamide gel electrophoresis maps: Relevance to proteomics, Electrophoresis 24, 217-224 (2003).
-
(2003)
Electrophoresis
, vol.24
, pp. 217-224
-
-
Pietrogrande, M.C.1
Marchetti, N.2
Dondi, F.3
Righetti, P.G.4
-
71
-
-
0036692065
-
Dynamics of protein turnover, a missing dimension in proteomics
-
Pratt, J. M., Petty, J., Riba-Garcia, I., Robertson, D. H., Gaskell, S. J., Oliver, S. G., and Beynon, R. J., Dynamics of protein turnover, a missing dimension in proteomics, Molecular and Cellular Proteomics 1, 579-591 (2002).
-
(2002)
Molecular and Cellular Proteomics
, vol.1
, pp. 579-591
-
-
Pratt, J.M.1
Petty, J.2
Riba-Garcia, I.3
Robertson, D.H.4
Gaskell, S.J.5
Oliver, S.G.6
Beynon, R.J.7
-
72
-
-
0032765007
-
Aptamer affinity chromatography: Combinatorial chemistry applied to protein purification
-
Romig, T. S., Bell, C, and Drolet, D. W., Aptamer affinity chromatography: Combinatorial chemistry applied to protein purification, Journal of Chromatography B: Biomedical Science Applications 731, 275-284 (1999).
-
(1999)
Journal of Chromatography B: Biomedical Science Applications
, vol.731
, pp. 275-284
-
-
Romig, T.S.1
Bell, C.2
Drolet, D.W.3
-
73
-
-
0036010264
-
Development of mammalian serum albumin affinity purification media by peptide phage display
-
Sato, A. K., Sexton, D. J., Morganelli, L. A., Cohen, E. H., Wu, Q. L., Conley, G. P., Streltsova, Z., Lee, S. W., Devlin, M., DeOliveira, D. B., Enright, J., Kent, R. B., Wescott, C. R., Ransohoff, T. C, Ley, A. C, and Ladner, R. C, Development of mammalian serum albumin affinity purification media by peptide phage display, Biotechnology Progress 18, 182-192 (2002).
-
(2002)
Biotechnology Progress
, vol.18
, pp. 182-192
-
-
Sato, A.K.1
Sexton, D.J.2
Morganelli, L.A.3
Cohen, E.H.4
Wu, Q.L.5
Conley, G.P.6
Streltsova, Z.7
Lee, S.W.8
Devlin, M.9
DeOliveira, D.B.10
Enright, J.11
Kent, R.B.12
Wescott, C.R.13
Ransohoff, T.C.14
Ley, A.C.15
Ladner, R.C.16
-
74
-
-
18344374893
-
Multiplexed protein profiling on microarrays by rolling-circle amplification
-
Schweitzer, B., Roberts, S., Grimwade, B., Shao, W., Wang, M., Fu, Q., Shu, Q., Laroche, I., Zhou, Z., Tchemev, V. T., Christiansen, J., Velleca, M., and Kingsmore, S. F., Multiplexed protein profiling on microarrays by rolling-circle amplification, Nature Biotechnology 20, 359-365 (2002).
-
(2002)
Nature Biotechnology
, vol.20
, pp. 359-365
-
-
Schweitzer, B.1
Roberts, S.2
Grimwade, B.3
Shao, W.4
Wang, M.5
Fu, Q.6
Shu, Q.7
Laroche, I.8
Zhou, Z.9
Tchemev, V.T.10
Christiansen, J.11
Velleca, M.12
Kingsmore, S.F.13
-
75
-
-
0036049889
-
Quantitative protein profiling using two-dimensional gel electrophoresis, isotope-coded affinity tag labeling, and mass spectrometry
-
Smolka, M., Zhou, H., and Aebersold, R., Quantitative protein profiling using two-dimensional gel electrophoresis, isotope-coded affinity tag labeling, and mass spectrometry, Molecular Cell Proteomics 1, 19-29 (2002).
-
(2002)
Molecular Cell Proteomics
, vol.1
, pp. 19-29
-
-
Smolka, M.1
Zhou, H.2
Aebersold, R.3
-
76
-
-
0347181849
-
A data review and re-assessment of ovarian cancer serum proteomic profiling
-
Sorace, J. M., and Zhan, M., A data review and re-assessment of ovarian cancer serum proteomic profiling, BMC Bioinformatics 4, 24 (2003).
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 24
-
-
Sorace, J.M.1
Zhan, M.2
-
78
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
Wolters, D. A., Washburn, M. P., and Yates, J. R., 3rd, An automated multidimensional protein identification technology for shotgun proteomics, Analytical Chemistry 73, 5683-5690 (2001).
-
(2001)
Analytical Chemistry
, vol.73
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates, J.R.3
-
79
-
-
0041735992
-
Proteomic patterns of tumor subsets in non-small-cell lung cancer
-
Yanagisawa, K., Shyr, Y., Xu, B. J., Massion, P. P., Larsen, P. H., White, B. C, Roberts, J. R., Edgerton, M., Gonzalez, A., Nadaf, S., Moore, J. H., Caprioli, R. M., and Carbone, D. P., Proteomic patterns of tumor subsets in non-small-cell lung cancer, The Lancet 362, 433-439 (2003).
-
(2003)
The Lancet
, vol.362
, pp. 433-439
-
-
Yanagisawa, K.1
Shyr, Y.2
Xu, B.J.3
Massion, P.P.4
Larsen, P.H.5
White, B.C.6
Roberts, J.R.7
Edgerton, M.8
Gonzalez, A.9
Nadaf, S.10
Moore, J.H.11
Caprioli, R.M.12
Carbone, D.P.13
-
80
-
-
0037879092
-
A reference map of a human pituitary adenoma proteome
-
Zhan, X., and Desiderio, D. M., A reference map of a human pituitary adenoma proteome, Proteomics 3, 699-713 (2003).
-
(2003)
Proteomics
, vol.3
, pp. 699-713
-
-
Zhan, X.1
Desiderio, D.M.2
-
81
-
-
0347134596
-
Affinity enrichment of plasma membrane for proteomics analysis
-
Zhang, W., Zhou, G, Zhao, Y., and White, M. A., Affinity enrichment of plasma membrane for proteomics analysis, Electrophoresis 24, 2855-2863 (2003).
-
(2003)
Electrophoresis
, vol.24
, pp. 2855-2863
-
-
Zhang, W.1
Zhou, G.2
Zhao, Y.3
White, M.A.4
|