-
1
-
-
0035900652
-
Mus81-Eme1 are essential components of a Holliday junction resolvase
-
M.N. Boddy, P.H. Gaillard, W.H. McDonald, P. Shanahan, J.R. Yates III and P. Russell, Mus81-Eme1 are essential components of a Holliday junction resolvase, Cell 107 (2001), 537-548.
-
(2001)
Cell
, vol.107
, pp. 537-548
-
-
Boddy, M.N.1
Gaillard, P.H.2
McDonald, W.H.3
Shanahan, P.4
Yates J.R. III5
Russell, P.6
-
2
-
-
0036171359
-
De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging
-
G. Cagney and A. Emili, De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging, Nat Biotechnol 20 (2002), 163-170.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 163-170
-
-
Cagney, G.1
Emili, A.2
-
3
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
S.B. Ficarro, M.L. McCleland, P.T. Stukenberg, D.J. Burke, M.M. Ross, J. Shabanowitz, D.F. Hunt and F.M. White, Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae, Nat Biotechnol 20 (2002), 301-305.
-
(2002)
Nat Biotechnol
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
4
-
-
0035823090
-
Protein biochips for differential profiling
-
E.T. Fung, V. Thulasiraman, S.R. Weinberger and E.A. Dalmasso, Protein biochips for differential profiling, Curr Opin Biotechnol 12 (2001), 65-69.
-
(2001)
Curr Opin Biotechnol
, vol.12
, pp. 65-69
-
-
Fung, E.T.1
Thulasiraman, V.2
Weinberger, S.R.3
Dalmasso, E.A.4
-
5
-
-
0034652301
-
Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry
-
C.L. Gatlin, J.K. Eng, S.T. Cross, J.C. Detter and J.R. Yates III, Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry, Anal Chem 72 (2000), 757-763.
-
(2000)
Anal Chem
, vol.72
, pp. 757-763
-
-
Gatlin, C.L.1
Eng, J.K.2
Cross, S.T.3
Detter, J.C.4
Yates J.R. III5
-
6
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
A.C. Gavin, M. Bosche, R. Krause, P. Grandi, M. Marzioch, A. Bauer, J. Schultz, J.M. Rick, A.M. Michon, C.M. Cruciat, M. Remor, C. Hofert, M. Schelder, M. Brajenovic, H. Ruffner, A. Merino, K. Klein, M. Hudak, D. Dickson, T. Rudi, V. Gnau, A. Bauch, S. Bastuck, B. Huhse, C. Leutwein, M.A. Heurtier, R.R. Copley, A. Edelmann, E. Querfurth, V. Rybin, G. Drewes, M. Raida, T. Bouwmeester, P. Bork, B. Seraphin, B. Kuster, G. Neubauer and G. Superti-Furga, Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature 415 (2002), 141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
7
-
-
0035356565
-
Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses
-
M.B. Goshe, T.P. Conrads, E.A. Panisko, N.H. Angell, T.D. Veenstra and R.D. Smith, Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses, Anal Chem 73 (2001), 2578-2586.
-
(2001)
Anal Chem
, vol.73
, pp. 2578-2586
-
-
Goshe, M.B.1
Conrads, T.P.2
Panisko, E.A.3
Angell, N.H.4
Veenstra, T.D.5
Smith, R.D.6
-
8
-
-
0036468952
-
Phosphoprotein isotope-coded affinity tags: Application to the enrichment and identification of low-abundance phosphoproteins
-
M.B. Goshe, T.D. Veenstra, E.A. Panisko, T.P. Conrads, N.H. Angell and R.D. Smith, Phosphoprotein isotope-coded affinity tags: application to the enrichment and identification of low-abundance phosphoproteins, Anal Chem 74 (2002), 607-616.
-
(2002)
Anal Chem
, vol.74
, pp. 607-616
-
-
Goshe, M.B.1
Veenstra, T.D.2
Panisko, E.A.3
Conrads, T.P.4
Angell, N.H.5
Smith, R.D.6
-
9
-
-
0035563654
-
Toward a high-throughput approach to quantitative proteomic analysis: Expression-dependent protein identification by mass spectrometry
-
T.J. Griffin, D.K. Han, S.P. Gygi, B. Rist, H. Lee, R. Aebersold and K.C. Parker, Toward a high-throughput approach to quantitative proteomic analysis: expression-dependent protein identification by mass spectrometry, J Am Soc Mass Spectrom 12 (2001), 1238-1246.
-
(2001)
J Am Soc Mass Spectrom
, vol.12
, pp. 1238-1246
-
-
Griffin, T.J.1
Han, D.K.2
Gygi, S.P.3
Rist, B.4
Lee, H.5
Aebersold, R.6
Parker, K.C.7
-
10
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
S.P. Gygi, B. Rist, S.A. Gerber, F. Turecek, M.H. Gelb and R. Aebersold, Quantitative analysis of complex protein mixtures using isotope-coded affinity tags, Nat Biotechnol 17 (1999), 994-999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
11
-
-
0034789979
-
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
-
D.K. Han, J. Eng, H. Zhou and R. Aebersold, Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry, Nat Biotechnol 19 (2001), 946-951.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 946-951
-
-
Han, D.K.1
Eng, J.2
Zhou, H.3
Aebersold, R.4
-
12
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Y. Ho, A. Gruhler, A. Heilbut, G.D. Bader, L. Moore, S.L. Adams, A. Millar, P. Taylor, K. Bennett, K. Boutilier, L. Yang, C. Wolting, I. Donaldson, S. Schandorff, J. Shewnarane, M. Vo, J. Taggart, M. Goudreault, B. Muskat, C. Alfarano, D. Dewar, Z. Lin, K. Michalickova, A.R. Willems, H. Sassi, P.A. Nielsen, K.J. Rasmussen, J.R. Andersen, L.E. Johansen, L.H. Hansen, H. Jespersen, A. Podtelejnikov, E. Nielsen, J. Crawford, V. Poulsen, B.D. Sorensen, J. Matthiesen, R.C. Hendrickson, F. Gleeson, T. Pawson, M.F. Moran, D. Durocher, M. Mann, C.W. Hogue, D. Figeys and M. Tyers, Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature 415 (2002), 180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.44
Figeys, D.45
Tyers, M.46
more..
-
14
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
A.J. Link, J. Eng, D.M. Schieltz, E. Carmack, G.J. Mize, D.R. Morris, B.M. Garvik and J.R. Yates III, Direct analysis of protein complexes using mass spectrometry, Nat Biotechnol 17 (1999), 676-682.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates J.R. III8
-
15
-
-
18444391517
-
Shotgun identification of protein modifications from protein complexes and lens tissue
-
M.J. MacCoss, W.H. McDonald, A. Saraf, R. Sadygov, J.M. Clark, J.J. Tasto, K.L. Gould, D. Wolters, M. Washburn, A. Weiss, J.I. Clark and J.R. Yates III, Shotgun identification of protein modifications from protein complexes and lens tissue, PNAS 12 (2002), 7900-7905.
-
(2002)
PNAS
, vol.12
, pp. 7900-7905
-
-
MacCoss, M.J.1
McDonald, W.H.2
Saraf, A.3
Sadygov, R.4
Clark, J.M.5
Tasto, J.J.6
Gould, K.L.7
Wolters, D.8
Washburn, M.9
Weiss, A.10
Clark, J.I.11
Yates J.R. III12
-
16
-
-
0035067251
-
Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome
-
Y. Oda, T. Nagasu and B.T. Chait, Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome, Nat Biotechnol 19 (2001), 379-382.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 379-382
-
-
Oda, Y.1
Nagasu, T.2
Chait, B.T.3
-
17
-
-
0036523738
-
Biomarker discovery in urine by proteomics
-
J.X. Pang, N. Ginanni, A.R. Dongre, S.A. Hefta and G.J. Opiteck, Biomarker discovery in urine by proteomics, Journal of Proteome Research 1 (2002) 161-169.
-
(2002)
Journal of Proteome Research
, vol.1
, pp. 161-169
-
-
Pang, J.X.1
Ginanni, N.2
Dongre, A.R.3
Hefta, S.A.4
Opiteck, G.J.5
-
18
-
-
0035543071
-
A novel multifunctional labeling reagent for enhanced protein characterization with mass spectrometry
-
E.C. Peters, D.M. Horn, D.C. Tully and A. Brock, A novel multifunctional labeling reagent for enhanced protein characterization with mass spectrometry, Rapid Commun Mass Spectrom 15 (2001), 2387-2392.
-
(2001)
Rapid Commun Mass Spectrom
, vol.15
, pp. 2387-2392
-
-
Peters, E.C.1
Horn, D.M.2
Tully, D.C.3
Brock, A.4
-
19
-
-
0036183393
-
Comparative proteomics based on stable isotope labeling and affinity selection
-
F.E. Regnier, L. Riggs, R. Zhang, L. Xiong, P. Liu, A. Chakraborty, E. Seeley, C. Sioma and R.A. Thompson, Comparative proteomics based on stable isotope labeling and affinity selection, J Mass Spectrom 37 (2002), 133-145.
-
(2002)
J Mass Spectrom
, vol.37
, pp. 133-145
-
-
Regnier, F.E.1
Riggs, L.2
Zhang, R.3
Xiong, L.4
Liu, P.5
Chakraborty, A.6
Seeley, E.7
Sioma, C.8
Thompson, R.A.9
-
20
-
-
85021242170
-
-
in preparation
-
A. Saraf et al., in preparation.
-
-
-
Saraf, A.1
-
21
-
-
70449674064
-
Identification of post-translationally modified proteins in proteome studies
-
A. Sickmann, K. Marcus, H. Schafer, E. Butt-Dorje, S. Lehr, A. Herkner, S. Suer, I. Bahr and H.E. Meyer, Identification of post-translationally modified proteins in proteome studies, Electrophoresis 22 (2001), 1669-1676.
-
(2001)
Electrophoresis
, vol.22
, pp. 1669-1676
-
-
Sickmann, A.1
Marcus, K.2
Schafer, H.3
Butt-Dorje, E.4
Lehr, S.5
Herkner, A.6
Suer, S.7
Bahr, I.8
Meyer, H.E.9
-
22
-
-
0036208549
-
Proteomic analysis of differential protein expression in human nasopharyngeal carcinoma cells induced by NAG7 transfection
-
C. Tan, J. Li, J. Wang, Q. Xiang, X. Zhang, L. Dong, S. Shen, S. Liang and G. Li, Proteomic analysis of differential protein expression in human nasopharyngeal carcinoma cells induced by NAG7 transfection, Proteomics 2 (2002), 306-312.
-
(2002)
Proteomics
, vol.2
, pp. 306-312
-
-
Tan, C.1
Li, J.2
Wang, J.3
Xiang, Q.4
Zhang, X.5
Dong, L.6
Shen, S.7
Liang, S.8
Li, G.9
-
23
-
-
0033791447
-
Proteasomal proteomics: Identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes
-
R. Verma, S. Chen, R. Feldman, D. Schieltz, J. Yates, J. Dohmen and R.J. Deshaies, Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes, Mol Biol Cell 11 (2000), 3425-3439.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 3425-3439
-
-
Verma, R.1
Chen, S.2
Feldman, R.3
Schieltz, D.4
Yates, J.5
Dohmen, J.6
Deshaies, R.J.7
-
24
-
-
0035074699
-
Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine
-
A. Vlahou, P.F. Schellhammer, S. Mendrinos, K. Patel, F.I. Kondylis, L. Gong, S. Nasim and G.L. Wright Jr, Development of a novel proteomic approach for the detection of transitional cell carcinoma of the bladder in urine, Am J Pathol 158 (2001), 1491-1502.
-
(2001)
Am J Pathol
, vol.158
, pp. 1491-1502
-
-
Vlahou, A.1
Schellhammer, P.F.2
Mendrinos, S.3
Patel, K.4
Kondylis, F.I.5
Gong, L.6
Nasim, S.7
Wright G.L., Jr.8
-
25
-
-
0035958567
-
Proteomics based on selecting and quantifying cysteine containing peptides by covalent chromatography
-
S. Wang and F.E. Regnier, Proteomics based on selecting and quantifying cysteine containing peptides by covalent chromatography, J Chromatogr A924 (2001), 345-357.
-
(2001)
J Chromatogr
, vol.A924
, pp. 345-357
-
-
Wang, S.1
Regnier, F.E.2
-
26
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
M.P. Washburn, D. Wolters and J.R. Yates III, Large-scale analysis of the yeast proteome by multidimensional protein identification technology, Nat Biotechnol 19 (2001), 242-247.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates J.R. III3
-
27
-
-
0035582244
-
An automated multidimensional protein identification technology for shotgun proteomics
-
D.A. Wolters, M.P. Washburn and J.R. Yates III, An automated multidimensional protein identification technology for shotgun proteomics, Anal Chem 73 (2001), 5683-5690.
-
(2001)
Anal Chem
, vol.73
, pp. 5683-5690
-
-
Wolters, D.A.1
Washburn, M.P.2
Yates J.R. III3
-
28
-
-
0035072715
-
A systematic approach to the analysis of protein phosphorylation
-
H. Zhou, J.D. Watts and R. Aebersold, A systematic approach to the analysis of protein phosphorylation, Nat Biotechnol 19 (2001), 375-378.
-
(2001)
Nat Biotechnol
, vol.19
, pp. 375-378
-
-
Zhou, H.1
Watts, J.D.2
Aebersold, R.3
|