Multidimensional chromatography coupled to electrospray ionization time-of-flight mass spectrometry as an alternative to two-dimensional gels for the identification and analysis of complex mixtures of intact proteins

Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences

Volumn 782, Issue 1-2, 2002, Pages 267-289

  Liu, Hongji ^a   Berger, Scott J ^a   Chakraborty, Asish B ^a   Plumb, Robert S ^a   Cohen, Steven A ^a  

^a WATERS CORPORATION   (United States)

Author keywords

Proteins; Proteomics; Ribosomes

Indexed keywords

LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; SEPARATION; YEAST;

ELECTROSPRAY IONIZATION;

PROTEINS;

ISOPROTEIN; RIBOSOME PROTEIN;

ANALYTIC METHOD; ARTICLE; CHROMATOGRAPHY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; ION EXCHANGE; ION EXCHANGE CHROMATOGRAPHY; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVERSED PHASE LIQUID CHROMATOGRAPHY; TWO DIMENSIONAL GEL ELECTROPHORESIS; CHEMISTRY; ELECTROSPRAY MASS SPECTROMETRY; METHODOLOGY;

CHROMATOGRAPHY, ION EXCHANGE; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; RIBOSOMAL PROTEINS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 0037176208     PISSN: 15700232     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1570-0232(02)00554-8     Document Type: Article

References (59)

1. Link A.J., Eng J., Schieltz D.M., Carmack E., Mize G.J., Morris D.R., Garvik B.M., Yates J.R. III. Nat. Biotechnol. 17:1999;676.
2. Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. Nat. Biotechnol. 17:1999;994.
3. Gao H., Shen Y., Veenstra T.D., Harkewicz R., Anderson G.A., Bruce J.E., Pasa-Tolic L., Smith R.D. J. Microcol. Sep. 12:2000;383.
4. Davis M.T., Beierle J., Bures E.T., McGinley M.D., Mort J., Robinson J.H., Spahr C.S., Yu W., Luethy R., Patterson S.D. J. Chromatogr. B Biomed. Sci. Appl. 752:2001;281.
5. Butt A., Davison M.D., Smith G.J., Young J.A., Gaskell S.J., Oliver S.G., Beynon R.J. Proteomics. 1:2001;42.
6. Jensen P.K., Pasa-Tolic L., Peden K.K., Martinovic S., Lipton M.S., Anderson G.A., Tolic N., Wong K.K., Smith R.D. Electrophoresis. 21:2000;1372.
7. Jensen P.K., Pasa-Tolic L., Anderson G.A., Horner J.A., Lipton M.S., Bruce J.E., Smith R.D. Anal. Chem. 71:1999;2076.
8. Wall D.B., Kachman M.T., Gong S.S., Parus S.J., Long M.W., Lubman D.M. Rapid Commun. Mass Spectrom. 15:2001;1649.
9. Wall D.B., Parus S.J., Lubman D.M. J. Chromatogr. B Biomed. Sci. Appl. 763:2001;139.
10. Opiteck G.J., Ramirez S.M., Jorgenson J.W., Moseley M.A. III. Anal. Biochem. 258:1998;349.
11. Giddings J.C. J. High Resolut. Chromatogr. Chromatogr. Commun. 10:1987;319.
12. Giddings J.C. Anal. Chem. 56:1984;1258A.
13. Murphy R.E., Schure M.R., Foley J.P. Anal. Chem. 70:1998;1585.
14. Davis J.M. Anal. Chem. 63:1991;2141.
15. Bushey M.M., Jorgenson J.W. Anal. Chem. 62:1990;161.
16. Opiteck G.J., Jorgenson J.W. Anal. Chem. 69:1997;2283.
17. Chong B.E., Yan F., Lubman D.M., Miller F.R. Rapid Commun. Mass Spectrom. 15:2001;291.
18. Unger K.K., Racaityte K., Wagner K., Miliotis T., Edholm L.E., Bischoff R., Marko-Varga G. J. High Resolut. Chromatogr. 23:2000;259.
19. Wagner K., Miliotis T., Marko-Varga G., Bischoff R., Unger K.K. Anal. Chem. 74:2002;809.
20. Wagner K., Racaityte K., Unger K.K., Miliotis T., Edholm L.E., Bischoff R., Marko-Varga G. J. Chromatogr. A. 893:2000;293.
21. Capel M., Datta D., Nierras C.R., Craven G.R. Anal. Biochem. 158:1986;179.
22. Lee S.-W., Berger S.J., Martinovic' S., Pasa-Tolic' L., Anderson G.A., Shen Y., Zhao R., Smith R.D. Proc. Natl. Acad. Sci. USA. 99:2002;5942.
23. Hardy S.J.S., Kurland C.G., Voynow P., Mora G. Biochemistry. 8:1969;2897.
24. Goffeau A., Barrell B.G., Bussey H., Davis R.W., Dujon B., Feldmann H., Galibert F., Hoheisel J.D., Jacq C., Johnston M., Louis E.J., Mewes H.W., Murakami Y., Philippsen P., Tettelin H., Oliver S.G. Science. 274:1996;546.
25. Costanzo M.C., Hogan J.D., Cusick M.E., Davis B.P., Fancher A.M., Hodges P.E., Kondu P., Lengieza C., Lew-Smith J.E., Lingner C., Roberg-Perez K.J., Tillberg M., Brooks J.E., Garrels J.I. Nucleic Acids Res. 28:2000;73.
26. Hodges P.E., McKee A.H., Davis B.P., Payne W.E., Garrels J.I. Nucleic Acids Res. 27:1999;69.
27. Mazsaroff I., Regnier F.E. J. Chromatogr. 443:1988;119.
28. Kopaciewicz W., Rounds M.A., Fasnauh J., Regnier F.E. J. Chromatogr. 266:1983;3.
29. Huber C.G., Premstaller A. J. Chromatogr. A. 849:1999;161.
30. Apffel A., Fischer S., Goldberg G., Goodley P.C., Kuhlmann F.E. J. Chromatogr. A. 712:1995;177.
31. Snyder L.R. Horvath C. High-Performance Liquid Chromatography, Advances and Perspectives. 1980;207 Academic Press, New York.
32. Planta R.J., Mager W.H. Yeast. 14:1998;471.
33. Mager W.H., Planta R.J., Ballesta J.-P., Lee J.C., Mizuta K., Suzuki K., Warner J.R., Woolford J. Nucleic Acids Res. 25:1997;4872.
34. Shen Y., Tolic N., Zhao R., Pasa-Tolic L., Li L., Berger S.J., Harkewicz R., Anderson G.A., Belov M.E., Smith R.D. Anal. Chem. 73:2001;3011.
35. Shen Y., Zhao R., Belov M.E., Conrads T.P., Anderson G.A., Tang K., Pasa-Tolic L., Veenstra T.D., Lipton M.S., Udseth H.R., Smith R.D. Anal. Chem. 73:2001;1766.
36. Tolley L., Jorgenson J.W., Moseley M.A. Anal. Chem. 73:2001;2985.
37. Becker-Ursic D., Davies J. Biochemistry. 15:1976;2289.
38. Arnold R.J., Polevoda B., Reilly J.P., Sherman F. J. Biol. Chem. 274:1999;37035.
39. Doris B.-U., Davies J. Biochemistry. 15:1976;2289.
40. Kruiswijk T., Kunst A., Planta R.J., Mager W.H. Biochem. J. 175:1978;221.
41. Lhoest J., Lobet Y., Costers E., Colson C. Eur. J. Biochem. 141:1984;585.
42. Lobet Y., Lhoest J., Colson C. Biochim. Biophys. Acta. 997:1989;224.
43. Naranda T., Ballesta J.P.G. Proc. Natl. Acad. Sci. USA. 88:1991;10563.
44. Santos C., Ortiz-Reyes B., Naranda T., Remacha M., Ballesta J.P.G. Biochemistry. 32:1993;4231.
45. Sanchez-Madrid F., Vidales F., Ballesta J.P.G. Eur. J. Biochem. 114:1981;609.
46. Vidales F.J., Robles M.T.S., Ballesta J.P.G. Biochemistry. 23:1984;390.
47. Zinker S., Warner J.R. J. Biol. Chem. 251:1976;1799.
48. Finley D., Bartel B., Varshavsky A. Nature. 338:1989;394.
49. Cherry J.M., Adler C., Ball C., Chervitz S.A., Dwight S.S., Hester E.T., Jia Y., Juvik G., Roe T., Schroeder M., Weng S., Botstein D. Nucleic Acids Res. 26:1998;73.
50. Veenstra T.D., Martinovic S., Anderson G.A., Pasa-Tolic L., Smith R.D. J. Am. Soc. Mass Spectrom. 11:2000;78.
51. Martinovic S., Veenstra T.D., Anderson G.A., Pasa-Tolic L., Smith R.D. J. Mass Spectrom. 37:2002;99.
52. Zubarev R.A., Horn D.M., Fridriksson E.K., Kelleher N.L., Kruger N.A., Lewis M.A., Carpenter B.K., McLafferty F.W. Anal. Chem. 72:2000;563.
53. Demirev P.A., Ramirez J., Fenselau C. Anal. Chem. 73:2001;5725.
54. Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. Proc. Natl. Acad. Sci. USA. 90:1993;5011.
55. James P., Quadroni M., Carafoli E., Gonnet G. Biochem. Biophys. Res. Commun. 195:1993;58.
56. Mann M., Hojrup P., Roepstorff P. Biol. Mass Spectrom. 22:1993;338.
57. Pappin D.J.C., Hojrup P., Bleasby A.J. Curr. Biol. 3:1993;327.
58. Mann M., Wilm M. Anal. Chem. 66:1994;4390.
59. Burton W.G., Nugent K.D., Slattery T.K., Summers B.R., Snyder L.R. J. Chromatogr. 443:1988;363.