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Volumn 48, Issue 11, 2010, Pages 4072-4082

Improved identification of epidemiologically related strains of Salmonella enterica by use of a fusion algorithm based on pulsed-field gel electrophoresis and multiple-locus variable-number tandem-repeat analysis

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; CEFTAZIDIME; CHLORAMPHENICOL; COTRIMOXAZOLE; GENTAMICIN; KANAMYCIN; NALIDIXIC ACID; STREPTOMYCIN; TETRACYCLINE;

EID: 78049521342     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00659-10     Document Type: Article
Times cited : (7)

References (27)
  • 1
    • 0017614807 scopus 로고
    • Bacteriophage- typing designations of Salmonella typhimurium
    • Lond
    • Anderson, E. S., L. R. Ward, M. J. Saxe, and J. D. de Sa. 1977. Bacteriophage- typing designations of Salmonella typhimurium. J. Hyg. (Lond). 78: 297-300.
    • (1977) J. Hyg. , vol.78 , pp. 297-300
    • Anderson, E.S.1    Ward, L.R.2    Saxe, M.J.3    De Sa, J.D.4
  • 2
    • 0013902668 scopus 로고
    • Antibiotic susceptibility testing by a standardized single disk method
    • Bauer, A. W., W. M. Kirby, J. C. Sherris, and M. Turck. 1966. Antibiotic susceptibility testing by a standardized single disk method. Am. J. Clin. Pathol. 45:493-496.
    • (1966) Am. J. Clin. Pathol. , vol.45 , pp. 493-496
    • Bauer, A.W.1    Kirby, W.M.2    Sherris, J.C.3    Turck, M.4
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • DOI 10.1093/nar/27.2.573
    • Benson, G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580. (Pubitemid 29210025)
    • (1999) Nucleic Acids Research , vol.27 , Issue.2 , pp. 573-580
    • Benson, G.1
  • 4
    • 0031724807 scopus 로고    scopus 로고
    • Considerations for measuring genetic variation and population structure with multilocus fingerprinting
    • Call, D. R., J. G. Hallett, S. G. Mech, and M. Evans. 1998. Considerations for measuring genetic variation and population structure with multilocus fingerprinting. Mol. Ecol. 7:1337-1346.
    • (1998) Mol. Ecol. , vol.7 , pp. 1337-1346
    • Call, D.R.1    Hallett, J.G.2    Mech, S.G.3    Evans, M.4
  • 5
    • 49949099468 scopus 로고    scopus 로고
    • Impact of compounding error on strategies for subtyping pathogenic bacteria
    • Call, D. R., L. Orfe, M. A. Davis, S. Lafrentz, and M. S. Kang. 2008. Impact of compounding error on strategies for subtyping pathogenic bacteria. Foodborne Pathog. Dis. 5:505-516.
    • (2008) Foodborne Pathog. Dis. , vol.5 , pp. 505-516
    • Call, D.R.1    Orfe, L.2    Davis, M.A.3    Lafrentz, S.4    Kang, M.S.5
  • 7
    • 0037952995 scopus 로고    scopus 로고
    • Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7
    • Davis, M. A., D. D. Hancock, T. E. Besser, and D. R. Call. 2003. Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7. J. Clin. Microbiol. 41:1843-1849.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1843-1849
    • Davis, M.A.1    Hancock, D.D.2    Besser, T.E.3    Call, D.R.4
  • 9
    • 18544384548 scopus 로고    scopus 로고
    • Multilocus sequence typing lacks the discriminatory ability of pulsed-field gel electrophoresis for typing Salmonella enterica serovar Typhimurium
    • Fakhr, M. K., L. K. Nolan, and C. M. Logue. 2005. Multilocus sequence typing lacks the discriminatory ability of pulsed-field gel electrophoresis for typing Salmonella enterica serovar Typhimurium. J. Clin. Microbiol. 43:2215-2219.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 2215-2219
    • Fakhr, M.K.1    Nolan, L.K.2    Logue, C.M.3
  • 10
    • 0000122573 scopus 로고
    • PHYLIP: Phylogeny Inference Package
    • version 3.2
    • Felsenstein, J. 1989. PHYLIP: Phylogeny Inference Package (version 3.2). Cladistics 5:164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 11
    • 34948845702 scopus 로고    scopus 로고
    • Comparison of molecular typing methods for the differentiation of Salmonella foodborne pathogens
    • Foley, S. L., S. Zhao, and R. D. Walker. 2007. Comparison of molecular typing methods for the differentiation of Salmonella foodborne pathogens. Foodborne Pathog. Dis. 4:253-276.
    • (2007) Foodborne Pathog. Dis. , vol.4 , pp. 253-276
    • Foley, S.L.1    Zhao, S.2    Walker, R.D.3
  • 13
    • 68849116228 scopus 로고    scopus 로고
    • Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A
    • Gulati, P., R. K. Varshney, and J. S. Virdi. 2009. Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A. J. Appl. Microbiol. 107:875-884.
    • (2009) J. Appl. Microbiol. , vol.107 , pp. 875-884
    • Gulati, P.1    Varshney, R.K.2    Virdi, J.S.3
  • 14
    • 33746255244 scopus 로고    scopus 로고
    • Comparison of multilocus sequence typing, pulsed-field gel electrophoresis, and antimicrobial susceptibility typing for characterization of Salmonella enterica serotype Newport isolates
    • Harbottle, H., D. G. White, P. F. McDermott, R. D. Walker, and S. Zhao. 2006. Comparison of multilocus sequence typing, pulsed-field gel electrophoresis, and antimicrobial susceptibility typing for characterization of Salmonella enterica serotype Newport isolates. J. Clin. Microbiol. 44: 2449-2457.
    • (2006) J. Clin. Microbiol. , vol.44 , pp. 2449-2457
    • Harbottle, H.1    White, D.G.2    McDermott, P.F.3    Walker, R.D.4    Zhao, S.5
  • 15
    • 34548704268 scopus 로고    scopus 로고
    • Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium
    • Hopkins, K. L., C. Maguire, E. Best, E. Liebana, and E. J. Threlfall. 2007. Stability of multiple-locus variable-number tandem repeats in Salmonella enterica serovar Typhimurium. J. Clin. Microbiol. 45:3058-3061.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 3058-3061
    • Hopkins, K.L.1    Maguire, C.2    Best, E.3    Liebana, E.4    Threlfall, E.J.5
  • 16
    • 0037387157 scopus 로고    scopus 로고
    • DNA finger-printing of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci
    • Lindstedt, B. A., E. Heir, E. Gjernes, and G. Kapperud. 2003. DNA finger-printing of Salmonella enterica subsp. enterica serovar Typhimurium with emphasis on phage type DT104 based on variable number of tandem repeat loci. J. Clin. Microbiol. 41:1469-1479.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1469-1479
    • Lindstedt, B.A.1    Heir, E.2    Gjernes, E.3    Kapperud, G.4
  • 17
    • 33847023514 scopus 로고    scopus 로고
    • Harmonization of the multiple-locus variable-number tandem repeat analysis method between Denmark and Norway for typing Salmonella Typhimurium isolates and closer examination of the VNTR loci
    • Lindstedt, B. A., M. Torpdahl, E. M. Nielsen, T. Vardund, L. Aas, and G. Kapperud. 2007 Harmonization of the multiple-locus variable-number tandem repeat analysis method between Denmark and Norway for typing Salmonella Typhimurium isolates and closer examination of the VNTR loci. J. Appl. Microbiol 102:728-735.
    • (2007) J. Appl. Microbiol , vol.102 , pp. 728-735
    • Lindstedt, B.A.1    Torpdahl, M.2    Nielsen, E.M.3    Vardund, T.4    Aas, L.5    Kapperud, G.6
  • 18
    • 5344254628 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis
    • Lindstedt, B. A., T. Vardund, L. Aas, and G. Kapperud. 2004. Multiple-locus variable-number tandem-repeats analysis of Salmonella enterica subsp. enterica serovar Typhimurium using PCR multiplexing and multicolor capillary electrophoresis. J. Microbiol. Methods 59:163-172.
    • (2004) J. Microbiol. Methods , vol.59 , pp. 163-172
    • Lindstedt, B.A.1    Vardund, T.2    Aas, L.3    Kapperud, G.4
  • 21
    • 33645707707 scopus 로고    scopus 로고
    • Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet
    • Ribot, E. M., M. A. Fair, R. Gautom, D. N. Cameron, S. B. Hunter, B. Swaminathan, and T. J. Barrett. 2006. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog. Dis. 3:59-67.
    • (2006) Foodborne Pathog. Dis. , vol.3 , pp. 59-67
    • Ribot, E.M.1    Fair, M.A.2    Gautom, R.3    Cameron, D.N.4    Hunter, S.B.5    Swaminathan, B.6    Barrett, T.J.7
  • 22
    • 33847395073 scopus 로고    scopus 로고
    • Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections
    • Torpdahl, M., G. Sorensen, B. A. Lindstedt, and E. M. Nielsen. 2007. Tandem repeat analysis for surveillance of human Salmonella Typhimurium infections. Emerg. Infect. Dis. 13:388-395.
    • (2007) Emerg. Infect. Dis. , vol.13 , pp. 388-395
    • Torpdahl, M.1    Sorensen, G.2    Lindstedt, B.A.3    Nielsen, E.M.4
  • 24
    • 33744982094 scopus 로고    scopus 로고
    • Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7
    • Vogler, A. J., C. Keys, Y. Nemoto, R. E. Colman, Z. Jay, and P. Keim. 2006. Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J. Bacteriol. 188:4253-4263.
    • (2006) J. Bacteriol. , vol.188 , pp. 4253-4263
    • Vogler, A.J.1    Keys, C.2    Nemoto, Y.3    Colman, R.E.4    Jay, Z.5    Keim, P.6
  • 26
    • 0034967194 scopus 로고    scopus 로고
    • Estimating the time to the most recent common ancestor for the Y chromosome or mitochondrial DNA for a pair of individuals
    • Walsh, B. 2001. Estimating the time to the most recent common ancestor for the Y chromosome or mitochondrial DNA for a pair of individuals. Genetics 158:897-912.
    • (2001) Genetics , vol.158 , pp. 897-912
    • Walsh, B.1


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