메뉴 건너뛰기




Volumn 107, Issue 3, 2009, Pages 875-884

Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of yersinia enterocolitica biovar 1A

Author keywords

Epidemiology; India; MLVA; VNTR; Yersinia enterocolitica

Indexed keywords

BACTERIA;

EID: 68849116228     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2009.04267.x     Document Type: Article
Times cited : (20)

References (44)
  • 1
    • 0033152406 scopus 로고    scopus 로고
    • The role of short sequence repeats in epidemiologic typing
    • van Belkum, A. (1999) The role of short sequence repeats in epidemiologic typing. Curr Opin Microbiol 2, 306 311.
    • (1999) Curr Opin Microbiol , vol.2 , pp. 306-311
    • Van Belkum, A.1
  • 3
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: a program to analyse DNA sequences
    • Benson, G. (1999) Tandem repeats finder: a program to analyse DNA sequences. Nucleic Acids Res 27, 573 580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 4
    • 0025270488 scopus 로고
    • Epidemiologic investigations of Yersinia enterocolitica and related species: sources, frequency and serogroup distribution
    • Bissett, M.L., Powers, C., Abbott, S.M. Janda, J.M. (1990) Epidemiologic investigations of Yersinia enterocolitica and related species: sources, frequency and serogroup distribution. J Clin Microbiol 28, 910 912.
    • (1990) J Clin Microbiol , vol.28 , pp. 910-912
    • Bissett, M.L.1    Powers, C.2    Abbott, S.M.3    Janda, J.M.4
  • 5
    • 0032694256 scopus 로고    scopus 로고
    • Yersinia enterocolitica: overview and epidemiologic correlates
    • Bottone, E.J. (1999) Yersinia enterocolitica: overview and epidemiologic correlates. Microb Infect 1, 323 333.
    • (1999) Microb Infect , vol.1 , pp. 323-333
    • Bottone, E.J.1
  • 6
    • 0029881394 scopus 로고    scopus 로고
    • Association between clinical presentation, biogroups and virulence attributes of Yersinia enterocolitica strains in human diarrhoeal disease
    • Burnens, A.P., Frey, A. Nicolet, J. (1996) Association between clinical presentation, biogroups and virulence attributes of Yersinia enterocolitica strains in human diarrhoeal disease. Epidemiol Infect 116, 27 34.
    • (1996) Epidemiol Infect , vol.116 , pp. 27-34
    • Burnens, A.P.1    Frey, A.2    Nicolet, J.3
  • 7
    • 0026135381 scopus 로고
    • Relationship between clinical and milk isolates of Yersinia enterocolitica
    • Butt, H.L., Gordon, D.L., Lee-Archer, I., Moritz, A. Merrell, W.H. (1991) Relationship between clinical and milk isolates of Yersinia enterocolitica. Pathology 23, 153 157.
    • (1991) Pathology , vol.23 , pp. 153-157
    • Butt, H.L.1    Gordon, D.L.2    Lee-Archer, I.3    Moritz, A.4    Merrell, W.H.5
  • 8
    • 0033186494 scopus 로고    scopus 로고
    • The Yersinia high-pathogenicity island
    • Carniel, E. (1999) The Yersinia high-pathogenicity island. Int Microbiol 2, 161 167.
    • (1999) Int Microbiol , vol.2 , pp. 161-167
    • Carniel, E.1
  • 9
    • 0029805602 scopus 로고    scopus 로고
    • Characterization of a large chromosomal "high-pathogenicity island" in biotype 1B Yersinia enterocolitica
    • Carniel, E., Guilvout, I. Prentice, M. (1996) Characterization of a large chromosomal "high-pathogenicity island" in biotype 1B Yersinia enterocolitica. J Bacteriol 178, 6743 6751.
    • (1996) J Bacteriol , vol.178 , pp. 6743-6751
    • Carniel, E.1    Guilvout, I.2    Prentice, M.3
  • 11
    • 22644441730 scopus 로고    scopus 로고
    • The phage-shock-protein response
    • Darwin, A.J. (2005) The phage-shock-protein response. Mol Microbiol 57, 621 628.
    • (2005) Mol Microbiol , vol.57 , pp. 621-628
    • Darwin, A.J.1
  • 12
    • 0035154988 scopus 로고    scopus 로고
    • The psp locus of Yersinia enterocolitica is required for virulence and for growth in vitro when the Ysc type III secretion system is produced
    • Darwin, A.J. Miller, V.L. (2001) The psp locus of Yersinia enterocolitica is required for virulence and for growth in vitro when the Ysc type III secretion system is produced. Mol Microbiol 39, 429 444.
    • (2001) Mol Microbiol , vol.39 , pp. 429-444
    • Darwin, A.J.1    Miller, V.L.2
  • 13
    • 1642432875 scopus 로고    scopus 로고
    • A polymorphic tandem repeat potentially useful for typing in the chromosome of Yersinia enterocolitica
    • De Benito, I., Cano, M.E., Aguero, J. Garcia-Lobo, J.M. (2004) A polymorphic tandem repeat potentially useful for typing in the chromosome of Yersinia enterocolitica. Microbiology 150, 199 204.
    • (2004) Microbiology , vol.150 , pp. 199-204
    • De Benito, I.1    Cano, M.E.2    Aguero, J.3    Garcia-Lobo, J.M.4
  • 14
    • 2942542734 scopus 로고    scopus 로고
    • Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource
    • Denoeud, F. Vergnaud, G. (2004) Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource. BMC Bioinformatics 5, 4.
    • (2004) BMC Bioinformatics , vol.5 , pp. 4
    • Denoeud, F.1    Vergnaud, G.2
  • 15
    • 0034830369 scopus 로고    scopus 로고
    • Francisella tularensis strain typing using multiple-locus variable-number tandem repeat analysis
    • Farlow, J., Smith, K.L., Wong, J., Abrams, M., Lytle, M. Keim, P. (2001) Francisella tularensis strain typing using multiple-locus variable-number tandem repeat analysis. J Clin Microbiol 39, 3186 3192.
    • (2001) J Clin Microbiol , vol.39 , pp. 3186-3192
    • Farlow, J.1    Smith, K.L.2    Wong, J.3    Abrams, M.4    Lytle, M.5    Keim, P.6
  • 16
    • 25144517626 scopus 로고    scopus 로고
    • Application of fluorescent amplified fragment length polymorphism for comparison of human and animal isolates of Yersinia enterocolitica
    • Fearnley, C., On, S.L., Kokotovic, B., Manning, G., Cheasty, T. Newel, D.G. (2005) Application of fluorescent amplified fragment length polymorphism for comparison of human and animal isolates of Yersinia enterocolitica. Appl Environ Microbiol 71, 4960 4965.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4960-4965
    • Fearnley, C.1    On, S.L.2    Kokotovic, B.3    Manning, G.4    Cheasty, T.5    Newel, D.G.6
  • 17
    • 37249028177 scopus 로고    scopus 로고
    • Comparison of multiple-locus variable-number tandem-repeat analysis with other PCR-based methods for typing Brucella suis isolates
    • García-Yoldi, D., Le Fleche, P., De Miguel, M.J., Muñoz, P.M., Blasco, J.M., Cvetnic, Z., Marín, C.M., Vergnaud, G. et al. (2007) Comparison of multiple-locus variable-number tandem-repeat analysis with other PCR-based methods for typing Brucella suis isolates. J Clin Microbiol 45, 4070 4072.
    • (2007) J Clin Microbiol , vol.45 , pp. 4070-4072
    • García-Yoldi, D.1    Le Fleche, P.2    De Miguel, M.J.3    Muñoz, P.M.4    Blasco, J.M.5    Cvetnic, Z.6    Marín, C.M.7    Vergnaud, G.8
  • 18
    • 34548087043 scopus 로고    scopus 로고
    • Development of a multiple-locus variable-number tandem repeat analysis (MLVA) for Yersinia enterocolitica palearctica and its application to bioserogroup 4/O3 subtyping
    • Gierczynski, R., Golubov, A., Neubauer, H., Pham, J.N. Rakin, A. (2007) Development of a multiple-locus variable-number tandem repeat analysis (MLVA) for Yersinia enterocolitica palearctica and its application to bioserogroup 4/O3 subtyping. J Clin Microbiol 45, 2508 2515.
    • (2007) J Clin Microbiol , vol.45 , pp. 2508-2515
    • Gierczynski, R.1    Golubov, A.2    Neubauer, H.3    Pham, J.N.4    Rakin, A.5
  • 19
    • 0025173345 scopus 로고
    • Excretion of Yersinia spp. associated with consumption of pasteurized milk
    • Greenwood, M.H. Hooper, W.L. (1990) Excretion of Yersinia spp. associated with consumption of pasteurized milk. Epidemiol Infect 104, 345 350.
    • (1990) Epidemiol Infect , vol.104 , pp. 345-350
    • Greenwood, M.H.1    Hooper, W.L.2
  • 20
    • 0034757959 scopus 로고    scopus 로고
    • Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms
    • Grundmann, H., Hori, S. Tanner, G. (2001) Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J Clin Microbiol 39, 4190 4192.
    • (2001) J Clin Microbiol , vol.39 , pp. 4190-4192
    • Grundmann, H.1    Hori, S.2    Tanner, G.3
  • 21
    • 33947711833 scopus 로고    scopus 로고
    • The rrn locus and gyrB genotyping confirm the existence of two clonal groups in strains of Yersinia enterocolitica subspecies palearctica biovar 1A
    • Gulati, P.S. Virdi, J.S. (2007) The rrn locus and gyrB genotyping confirm the existence of two clonal groups in strains of Yersinia enterocolitica subspecies palearctica biovar 1A. Res Microbiol 158, 236 243.
    • (2007) Res Microbiol , vol.158 , pp. 236-243
    • Gulati, P.S.1    Virdi, J.S.2
  • 22
    • 33646596541 scopus 로고    scopus 로고
    • Application of comparative phylogenomics to study the evolution of Yersinia enterocolitica and to identify genetic differences relating to pathogenicity
    • Howard, S.L., Gaunt, M.W., Hinds, J., Witney, A.A., Stabler, R. Wren, B.W. (2006) Application of comparative phylogenomics to study the evolution of Yersinia enterocolitica and to identify genetic differences relating to pathogenicity. J Bacteriol 188, 3645 3653.
    • (2006) J Bacteriol , vol.188 , pp. 3645-3653
    • Howard, S.L.1    Gaunt, M.W.2    Hinds, J.3    Witney, A.A.4    Stabler, R.5    Wren, B.W.6
  • 23
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
    • Hunter, P.R. Gaston, M.A. (1988) Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26, 2465 2466.
    • (1988) J Clin Microbiol , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 24
    • 34250637522 scopus 로고    scopus 로고
    • A database of simple sequence repeats from cereal and legume expressed sequence tags mined in silico: survey and evaluation
    • Jayashree, B., Punna, R., Prasad, P., Bantte, K., Hash, C.T., Chandra, S., Hoisington, D.A. Varshney, R.K. (2006) A database of simple sequence repeats from cereal and legume expressed sequence tags mined in silico: survey and evaluation. In Silico Biol 6, 607 620.
    • (2006) In Silico Biol , vol.6 , pp. 607-620
    • Jayashree, B.1    Punna, R.2    Prasad, P.3    Bantte, K.4    Hash, C.T.5    Chandra, S.6    Hoisington, D.A.7    Varshney, R.K.8
  • 25
    • 4344699881 scopus 로고    scopus 로고
    • Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis
    • Johansson, A., Farlow, J., Larsson, P., Dukerich, M., Chambers, E., Bystrom, M., Fox, J., Chu, M. et al. (2004) Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. J Bacteriol 186, 5808 5818.
    • (2004) J Bacteriol , vol.186 , pp. 5808-5818
    • Johansson, A.1    Farlow, J.2    Larsson, P.3    Dukerich, M.4    Chambers, E.5    Bystrom, M.6    Fox, J.7    Chu, M.8
  • 27
    • 39849098121 scopus 로고    scopus 로고
    • Multiple-locus variable-number of tandem-repeats analysis distinguishes Vibrio parahaemolyticus pandemic O3:K6 strains
    • Kimura, B., Sekine, Y., Takahashi, H., Tanaka, Y., Obata, H., Kai, A., Morozumi, S. Fujii, T. (2008) Multiple-locus variable-number of tandem-repeats analysis distinguishes Vibrio parahaemolyticus pandemic O3:K6 strains. J Microbiol Methods 72, 313 320.
    • (2008) J Microbiol Methods , vol.72 , pp. 313-320
    • Kimura, B.1    Sekine, Y.2    Takahashi, H.3    Tanaka, Y.4    Obata, H.5    Kai, A.6    Morozumi, S.7    Fujii, T.8
  • 29
    • 33745137439 scopus 로고    scopus 로고
    • Genotyping of human and porcine Yersinia enterocolitica, Yersinia intermedia, and Yersinia bercovieri strains from Switzerland by amplified fragment length polymorphism analysis
    • Kuehni-Boghenbor, K., On, S.L., Kokotovic, B., Baumgartner, A., Wassenaar, T.M., Wittwer, M., Bissig-Choisat, B. Frey, J. (2006) Genotyping of human and porcine Yersinia enterocolitica, Yersinia intermedia, and Yersinia bercovieri strains from Switzerland by amplified fragment length polymorphism analysis. Appl Environ Microbiol 72, 4061 4066.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4061-4066
    • Kuehni-Boghenbor, K.1    On, S.L.2    Kokotovic, B.3    Baumgartner, A.4    Wassenaar, T.M.5    Wittwer, M.6    Bissig-Choisat, B.7    Frey, J.8
  • 31
    • 22244459534 scopus 로고    scopus 로고
    • Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria
    • Lindstedt, B.A. (2005) Multiple-locus variable number tandem repeats analysis for genetic fingerprinting of pathogenic bacteria. Electrophoresis 26, 2567 2582.
    • (2005) Electrophoresis , vol.26 , pp. 2567-2582
    • Lindstedt, B.A.1
  • 33
    • 0025723518 scopus 로고
    • Yersinia enterocolitica isolated from two cohorts of young children in Santiago, Chile: incidence of and lack of correlation between illness and proposed virulence factors
    • Morris, J.G. Jr., Prado, V., Ferreccio, C., Robins-Browne, R.M., Bordun, A-M., Cayazzo, M., Kay, B.A. Levine, M.M. (1991) Yersinia enterocolitica isolated from two cohorts of young children in Santiago, Chile: incidence of and lack of correlation between illness and proposed virulence factors. J Clin Microbiol 29, 2784 2788.
    • (1991) J Clin Microbiol , vol.29 , pp. 2784-2788
    • Morris, Jr.J.G.1    Prado, V.2    Ferreccio, C.3    Robins-Browne, R.M.4    Bordun, A-M.5    Cayazzo, M.6    Kay, B.A.7    Levine, M.M.8
  • 34
    • 0028065674 scopus 로고
    • Adaptive evolution of highly mutable loci in pathogenic bacteria
    • Moxon, E.R., Rainey, P.B., Nowak, M.A. Lenski, R.E. (1995) Adaptive evolution of highly mutable loci in pathogenic bacteria. Curr Biol 4, 24 33.
    • (1995) Curr Biol , vol.4 , pp. 24-33
    • Moxon, E.R.1    Rainey, P.B.2    Nowak, M.A.3    Lenski, R.E.4
  • 35
    • 0028004335 scopus 로고
    • Efficient subtyping of pathogenic Yersinia enterocolitica strains by pulsed-field gel electrophoresis
    • Najdenski, H., Iteman, I. Carniel, E. (1994) Efficient subtyping of pathogenic Yersinia enterocolitica strains by pulsed-field gel electrophoresis. J Clin Microbiol 32, 2913 2920.
    • (1994) J Clin Microbiol , vol.32 , pp. 2913-2920
    • Najdenski, H.1    Iteman, I.2    Carniel, E.3
  • 36
    • 0029927408 scopus 로고    scopus 로고
    • Tetrameric repeat units associated with virulence factor phase variation in Haemophilus also occur in Neisseria spp. and Moraxella catarrhalis
    • Peak, I.R., Jennings, M.P., Hood, D.W., Bisercic, M. Moxon, E.R. (1996) Tetrameric repeat units associated with virulence factor phase variation in Haemophilus also occur in Neisseria spp. and Moraxella catarrhalis. FEMS Microbiol Lett 137, 109 114.
    • (1996) FEMS Microbiol Lett , vol.137 , pp. 109-114
    • Peak, I.R.1    Jennings, M.P.2    Hood, D.W.3    Bisercic, M.4    Moxon, E.R.5
  • 37
    • 0020045543 scopus 로고
    • A nosocomial outbreak of diarrheal disease due to Yersinia enterocolitica serotype O:5, biotype 1A
    • Ratnam, S., Mercer, E., Picco, B., Parsons, S. Butler, R. (1982) A nosocomial outbreak of diarrheal disease due to Yersinia enterocolitica serotype O:5, biotype 1A. J Infect Dis 145, 242 247.
    • (1982) J Infect Dis , vol.145 , pp. 242-247
    • Ratnam, S.1    Mercer, E.2    Picco, B.3    Parsons, S.4    Butler, R.5
  • 38
    • 0003038307 scopus 로고    scopus 로고
    • Yersinia enterocolitica
    • ed. Doyle, M.P. Beuchat, L.R. Montiville, T.J. pp. Washington, DC. American Society for Microbiology.
    • Robins-Browne, R.M. (1997) Yersinia enterocolitica. In Food Microbiology: Fundamentals and Frontiers ed. Doyle, M.P., Beuchat, L.R. Montiville, T.J. pp. 192 215 Washington, DC : American Society for Microbiology.
    • (1997) Food Microbiology: Fundamentals and Frontiers , pp. 192-215
    • Robins-Browne, R.M.1
  • 39
    • 7644241359 scopus 로고    scopus 로고
    • Repetitive elements sequence (REP/ERIC)-PCR based genotyping of clinical and environmental strains of Yersinia enterocolitica biotype 1A reveal existence of limited number of clonal groups
    • Sachdeva, P. Virdi, J.S. (2004) Repetitive elements sequence (REP/ERIC)-PCR based genotyping of clinical and environmental strains of Yersinia enterocolitica biotype 1A reveal existence of limited number of clonal groups. FEMS Microbiol Lett 240, 193 201.
    • (2004) FEMS Microbiol Lett , vol.240 , pp. 193-201
    • Sachdeva, P.1    Virdi, J.S.2
  • 40
    • 3843099223 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s
    • Schouls, L.M., van der Heide, H.G., Vauterin, L., Vauterin, P. Mooi, F.R. (2004) Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s. J Bacteriol 186, 5496 5505.
    • (2004) J Bacteriol , vol.186 , pp. 5496-5505
    • Schouls, L.M.1    Van Der Heide, H.G.2    Vauterin, L.3    Vauterin, P.4    Mooi, F.R.5
  • 41
    • 42449121731 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem-repeat analysis as a tool for subtyping Listeria monocytogenes strains
    • Sperry, K.E., Kathariou, S., Edwards, J.S. Wolf, L.A. (2008) Multiple-locus variable-number tandem-repeat analysis as a tool for subtyping Listeria monocytogenes strains. J Clin Microbiol 46, 1435 1450.
    • (2008) J Clin Microbiol , vol.46 , pp. 1435-1450
    • Sperry, K.E.1    Kathariou, S.2    Edwards, J.S.3    Wolf, L.A.4
  • 43
    • 33845999944 scopus 로고    scopus 로고
    • The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081
    • Thomson, N.R., Howard, S., Wren, B.W., Holden, M.T., Crossman, L., Challis, G.L., Churcher, C., Mungall, K. et al. (2006) The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet 2, e206.
    • (2006) PLoS Genet , vol.2 , pp. 206
    • Thomson, N.R.1    Howard, S.2    Wren, B.W.3    Holden, M.T.4    Crossman, L.5    Challis, G.L.6    Churcher, C.7    Mungall, K.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.