메뉴 건너뛰기




Volumn 4, Issue 11, 2010, Pages 1386-1397

Impact of elevated nitrate on sulfate-reducing bacteria: A comparative Study of Desulfovibrio vulgaris

(17)  He, Qiang a,b   He, Zhili c,d   Joyner, Dominique C d,e   Joachimiak, Marcin d,e   Price, Morgan N d,e   Yang, Zamin K d,f   Yen, Huei Che Bill d   Hemme, Christopher L c,d   Chen, Wenqiong d,g   Fields, Matthew M d,h   Stahl, David A d,i   Keasling, Jay D d,e,j   Keller, Martin d,f   Arkin, Adam P d,e,k   Hazen, Terry C d,e   Wall, Judy D d   Zhou, Jizhong c,d  


Author keywords

Desulfovibrio; functional genomics; nitrate; stress response; sulfate reducing bacteria; systems biology

Indexed keywords

NITRATE; SODIUM CHLORIDE; SULFATE;

EID: 77958459381     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2010.59     Document Type: Article
Times cited : (66)

References (55)
  • 1
    • 0032534553 scopus 로고    scopus 로고
    • Reduction of U(VI) by indigenous bacteria in contaminated ground water
    • Abdelouas A, Lu YM, Lutze W, Nuttall HE. (1998). Reduction of U(VI) by indigenous bacteria in contaminated ground water. J Contam Hydrol 35: 217-233.
    • (1998) J Contam Hydrol , vol.35 , pp. 217-233
    • Abdelouas, A.1    Lu, Y.M.2    Lutze, W.3    Nuttall, H.E.4
  • 2
    • 33644937843 scopus 로고    scopus 로고
    • Effects of legacy nuclear waste on the compositional diversity and distributions of sulfate-reducing bacteria in a terrestrial subsurface aquifer
    • Bagwell CE, Liu X, Wu L, Zhou J. (2006). Effects of legacy nuclear waste on the compositional diversity and distributions of sulfate-reducing bacteria in a terrestrial subsurface aquifer. FEMS Microbiol Ecol 55: 424-431.
    • (2006) FEMS Microbiol Ecol , vol.55 , pp. 424-431
    • Bagwell, C.E.1    Liu, X.2    Wu, L.3    Zhou, J.4
  • 3
    • 34548505486 scopus 로고    scopus 로고
    • Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough
    • Bender KS, Yen H-CB, Hemme CL, Yang Z, He Z, He Q et al. (2007). Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough. Appl Environ Microbiol 73: 5389-5400.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5389-5400
    • Bender, K.S.1    H-Cb, Y.2    Hemme, C.L.3    Yang, Z.4    He, Z.5    He, Q.6
  • 4
    • 58349122104 scopus 로고    scopus 로고
    • Overcoming the anaerobic hurdle in phenotypic microarrays: Generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough
    • Borglin S, Joyner D, Jacobsen J, Mukhopadhyay A, Hazen TC. (2009). Overcoming the anaerobic hurdle in phenotypic microarrays: generation and visualization of growth curve data for Desulfovibrio vulgaris Hildenborough. J Microbiol Methods 76: 159-168.
    • (2009) J Microbiol Methods , vol.76 , pp. 159-168
    • Borglin, S.1    Joyner, D.2    Jacobsen, J.3    Mukhopadhyay, A.4    Hazen, T.C.5
  • 6
    • 34447626333 scopus 로고    scopus 로고
    • Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site
    • Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR. (2007). Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site. BMC Genomics 8: 180.
    • (2007) BMC Genomics , vol.8 , pp. 180
    • Butler, J.E.1    He, Q.2    Nevin, K.P.3    He, Z.4    Zhou, J.5    Lovley, D.R.6
  • 7
    • 0242286667 scopus 로고    scopus 로고
    • Roles of cytoplasmic osmolytes, water, and crowding in the response of Escherichia coli to osmotic stress: Biophysical basis of osmoprotection by glycine betaine
    • Cayley S, Record Jr MT. (2003). Roles of cytoplasmic osmolytes, water, and crowding in the response of Escherichia coli to osmotic stress: biophysical basis of osmoprotection by glycine betaine. Biochemistry 42: 12596-12609.
    • (2003) Biochemistry , vol.42 , pp. 12596-12609
    • Cayley, S.1    Record Jr., M.T.2
  • 9
    • 0037210672 scopus 로고    scopus 로고
    • Bioremediation of chromate: Thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria
    • Chardin B, Dolla A, Chaspoul F, Fardeau ML, Gallice P, Bruschi M. (2002). Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria. Appl Environ Microbiol 60: 352-360.
    • (2002) Appl Environ Microbiol , vol.60 , pp. 352-360
    • Chardin, B.1    Dolla, A.2    Chaspoul, F.3    Fardeau, M.L.4    Gallice, P.5    Bruschi, M.6
  • 10
    • 0014348405 scopus 로고
    • Role of pyruvate and S-adenosylmethionine in activating the pyruvate formate-lyase of Escherichia coli
    • Chase T, Rabinowitz JC. (1968). Role of pyruvate and S-adenosylmethionine in activating the pyruvate formate-lyase of Escherichia coli. J Bacteriol 96: 1065-1078.
    • (1968) J Bacteriol , vol.96 , pp. 1065-1078
    • Chase, T.1    Rabinowitz, J.C.2
  • 11
    • 33644748620 scopus 로고    scopus 로고
    • Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough
    • Chhabra SR, He Q, Huang KH, Gaucher SP, Alm EJ, He Z et al. (2006). Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J Bacteriol 188: 1817-1828.
    • (2006) J Bacteriol , vol.188 , pp. 1817-1828
    • Chhabra, S.R.1    He, Q.2    Huang, K.H.3    Gaucher, S.P.4    Alm, E.J.5    He, Z.6
  • 12
    • 33747337245 scopus 로고    scopus 로고
    • Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion
    • Clark ME, He Q, He Z, Huang KH, Alm EJ, Wan X-F et al. (2006). Temporal transcriptomic analysis as Desulfovibrio vulgaris Hildenborough transitions into stationary phase during electron donor depletion. Appl Environ Microbiol 72: 5578-5588.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5578-5588
    • Clark, M.E.1    He, Q.2    He, Z.3    Huang, K.H.4    Alm, E.J.5    Wan, X.-F.6
  • 13
  • 14
    • 33646018056 scopus 로고    scopus 로고
    • Phylogenetic and functional biomakers as indicators of bacterial community responses to mixed-waste contamination
    • FieldsMW, Bagwell CE, Carroll SL, Yan T, Liu X,Watson DB et al. (2006). Phylogenetic and functional biomakers as indicators of bacterial community responses to mixed-waste contamination. Environ Sci Technol 40: 2601-2607.
    • (2006) Environ Sci Technol , vol.40 , pp. 2601-2607
    • Fields, M.W.1    Bagwell, C.E.2    Carroll, S.L.3    Yan, T.4    Liu, X.5    Watson, D.B.6
  • 15
    • 0036742036 scopus 로고    scopus 로고
    • Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments
    • Finneran KT, Housewright ME, Lovley DR. (2002). Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments. Environ Microbiol 4: 510-516.
    • (2002) Environ Microbiol , vol.4 , pp. 510-516
    • Finneran, K.T.1    Housewright, M.E.2    Lovley, D.R.3
  • 16
    • 13544275092 scopus 로고    scopus 로고
    • Structure of sediment-associated microbial communities along a heavy metal contaminated gradient in the marine environment
    • Gillan DC, Danis B, Pernet P, Joly G, Dubois P. (2005). Structure of sediment-associated microbial communities along a heavy metal contaminated gradient in the marine environment. Appl Environ Microbiol 71: 679-690.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 679-690
    • Gillan, D.C.1    Danis, B.2    Pernet, P.3    Joly, G.4    Dubois, P.5
  • 17
    • 0037964766 scopus 로고    scopus 로고
    • Nitrite reductase activity of sulfate-reducing bacteria prevents their inhibition by nitrate-reducing, sulfide-oxidizing bacteria
    • Greene EA, Hubert C, Nemati M, Jenneman GE, Voordouw G. (2003). Nitrite reductase activity of sulfate-reducing bacteria prevents their inhibition by nitrate-reducing, sulfide-oxidizing bacteria. Environ Microbiol 5: 607-617.
    • (2003) Environ Microbiol , vol.5 , pp. 607-617
    • Greene, E.A.1    Hubert, C.2    Nemati, M.3    Jenneman, G.E.4    Voordouw, G.5
  • 19
    • 9244240775 scopus 로고    scopus 로고
    • Physiological and gene expression analysis of inhibition of Desulfovibrio vulgaris Hildenborough by nitrite
    • Haveman SA, Greene EA, Stilwell CP, Voordouw JK, Voordouw G. (2004). Physiological and gene expression analysis of inhibition of Desulfovibrio vulgaris Hildenborough by nitrite. J Bacteriol 186: 7944-7950.
    • (2004) J Bacteriol , vol.186 , pp. 7944-7950
    • Haveman, S.A.1    Greene, E.A.2    Stilwell, C.P.3    Voordouw, J.K.4    Voordouw, G.5
  • 20
    • 23944460534 scopus 로고    scopus 로고
    • Gene expression analysis of the mechanism of inhibition of Desulfovibrio vulgaris Hildenborough by nitratereducing, sulfide-oxidizing bacteria
    • Haveman SA, Greene EA, Voordouw G. (2005). Gene expression analysis of the mechanism of inhibition of Desulfovibrio vulgaris Hildenborough by nitratereducing, sulfide-oxidizing bacteria. Environ Microbiol 7: 1461-1465.
    • (2005) Environ Microbiol , vol.7 , pp. 1461-1465
    • Haveman, S.A.1    Greene, E.A.2    Voordouw, G.3
  • 21
    • 33744937908 scopus 로고    scopus 로고
    • Using the stress response to monitor process control: Pathways to more effective bioremediation
    • Hazen TC, Stahl DA. (2006). Using the stress response to monitor process control: pathways to more effective bioremediation. Curr Opin Biotechnol 17: 285-290.
    • (2006) Curr Opin Biotechnol , vol.17 , pp. 285-290
    • Hazen, T.C.1    Stahl, D.A.2
  • 22
    • 33745152320 scopus 로고    scopus 로고
    • Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis
    • He Q, Huang KH, He Z, Alm EJ, Fields MW, Hazen TC et al. (2006). Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. Appl Environ Microbiol 72: 4370-4381.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 4370-4381
    • He, Q.1    Huang, K.H.2    He, Z.3    Alm, E.J.4    Fields, M.W.5    Hazen, T.C.6
  • 23
  • 25
    • 0142179210 scopus 로고    scopus 로고
    • Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays
    • Jain N, Thatte J, Braciale T, Ley K, O'Connell M, Lee JK. (2003). Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays. Bioinformatics 19: 1945-1951.
    • (2003) Bioinformatics , vol.19 , pp. 1945-1951
    • Jain, N.1    Thatte, J.2    Braciale, T.3    Ley, K.4    O'Connell, M.5    Lee, J.K.6
  • 27
    • 33745226180 scopus 로고    scopus 로고
    • JColorGrid: Software for the visualization of biological measurements
    • Joachimiak MP, Weissman JL, May BCH. (2006). JColorGrid: software for the visualization of biological measurements. BMC Bioinformatics 7: 225.
    • (2006) BMC Bioinformatics , vol.7 , pp. 225
    • Joachimiak, M.P.1    Weissman, J.L.2    May, B.C.H.3
  • 28
    • 0017101149 scopus 로고
    • Metal accumulation by bacteria with particular reference to dissimilatory sulfate-reducing bacteria
    • Jones HE, Trudinger PA, Chambers LA, Pyliotis NA. (1976). Metal accumulation by bacteria with particular reference to dissimilatory sulfate-reducing bacteria. Z Allg Microbiol 16: 425-435.
    • (1976) Z Allg Microbiol , vol.16 , pp. 425-435
    • Jones, H.E.1    Trudinger, P.A.2    Chambers, L.A.3    Pyliotis, N.A.4
  • 29
    • 0017115986 scopus 로고
    • A novel reaction of S-adenosyl-L-methionine correlated with the activation of pyruvate formate-lyase
    • Knappe J, Schmitt T. (1976). A novel reaction of S-adenosyl-L-methionine correlated with the activation of pyruvate formate-lyase. Biochem Biophys Res Commun 71: 1110-1117.
    • (1976) Biochem Biophys Res Commun , vol.71 , pp. 1110-1117
    • Knappe, J.1    Schmitt, T.2
  • 30
    • 21744453310 scopus 로고    scopus 로고
    • Microbial biogeochemistry of uranium mill tailings
    • Landa ER. (2005). Microbial biogeochemistry of uranium mill tailings. Adv Appl Microbiol 57: 113-130.
    • (2005) Adv Appl Microbiol , vol.57 , pp. 113-130
    • Landa, E.R.1
  • 31
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu H, Sadygov RG, Yates III JR. (2004). A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal Chem 76: 4193-4201.
    • (2004) Anal Chem , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 32
    • 20444393494 scopus 로고    scopus 로고
    • Bioremediation of radioactive waste: Radionuclide-microbe interactions in laboratory and field-scale studies
    • Lloyd JR, Renshaw JC. (2005). Bioremediation of radioactive waste: radionuclide-microbe interactions in laboratory and field-scale studies. Curr Opin Biotechnol 16: 254-260.
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 254-260
    • Lloyd, J.R.1    Renshaw, J.C.2
  • 33
    • 0033051555 scopus 로고    scopus 로고
    • Reduction of technetium by Desulfovibrio desulfuricans: Biocatalyst characterization and use in a flowthrough bioreactor
    • Lloyd JR, Ridley J, Khizniak T, Lyalikova NN, Macaskie LE. (1999). Reduction of technetium by Desulfovibrio desulfuricans: biocatalyst characterization and use in a flowthrough bioreactor. Appl Environ Microbiol 65: 2691-2696.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2691-2696
    • Lloyd, J.R.1    Ridley, J.2    Khizniak, T.3    Lyalikova, N.N.4    MacAskie, L.E.5
  • 34
    • 0026614445 scopus 로고
    • Reduction of uranium by Desulfovibrio desulfuricans
    • Lovley DR, Phillips EJP. (1992). Reduction of uranium by Desulfovibrio desulfuricans. Appl Environ Microbiol 58: 850-856.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 850-856
    • Lovley, D.R.1    Phillips, E.J.P.2
  • 37
    • 0031253537 scopus 로고    scopus 로고
    • Nitrate and nitrite utilization in sulfate-reducing bacteria
    • Moura I, Bursakov S, Costa C, Moura JJG. (1997). Nitrate and nitrite utilization in sulfate-reducing bacteria. Anaerobe 3: 279-290.
    • (1997) Anaerobe , vol.3 , pp. 279-290
    • Moura, I.1    Bursakov, S.2    Costa, C.3    Moura, J.J.G.4
  • 40
    • 4143132677 scopus 로고    scopus 로고
    • Bioremediation of metals and radionuclides: What it is and how it works
    • NABIR, Hazen TC, Benson SM, Metting FB, Faison B, Palmisano AC, McCullough J (eds) Lawrence Berkeley National Laboratory: Berkeley, CA
    • NABIR. (2003). Bioremediation of metals and radionuclides: what it is and how it works. In: Hazen TC, Benson SM, Metting FB, Faison B, Palmisano AC, McCullough J (eds). NABIR Primer. 2nd edn. Lawrence Berkeley National Laboratory: Berkeley, CA. pp 1-78.
    • (2003) NABIR Primer. 2nd Edn , pp. 1-78
  • 45
    • 22544432327 scopus 로고    scopus 로고
    • Reconstruction of regulatory and metabolic pathways in metal-reducing d-Proteobacteria
    • Rodionov DA, Dubchak I, Arkin AP, Alm E, Gelfand MS. (2004). Reconstruction of regulatory and metabolic pathways in metal-reducing d-Proteobacteria. Genome Biol 5: R90.
    • (2004) Genome Biol , vol.5
    • Rodionov, D.A.1    Dubchak, I.2    Arkin, A.P.3    Alm, E.4    Gelfand, M.S.5
  • 47
    • 0036843729 scopus 로고    scopus 로고
    • Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution
    • Valls M, de Lorenzo V. (2002). Exploiting the genetic and biochemical capacities of bacteria for the remediation of heavy metal pollution. FEMS Microbiol Rev 26: 327-338.
    • (2002) FEMS Microbiol Rev , vol.26 , pp. 327-338
    • Valls, M.1    De Lorenzo, V.2
  • 48
    • 0001187799 scopus 로고    scopus 로고
    • The hybrid-cluster protein ('prismane protein') from Escherichia coli: Characterization of the hybridcluster protein, redox properties of the [2Fe-2S] and [4Fe-2S-2O] clusters and identification of an associated NADH oxidoreductase containing FAD and [2Fe-2S]
    • van den Berg WAM, Hagen WR, van Dongen WMAM. (2000). The hybrid-cluster protein ('prismane protein') from Escherichia coli: characterization of the hybridcluster protein, redox properties of the [2Fe-2S] and [4Fe-2S-2O] clusters and identification of an associated NADH oxidoreductase containing FAD and [2Fe-2S]. Eur J Biochem 267: 666-676.
    • (2000) Eur J Biochem , vol.267 , pp. 666-676
    • Van Den Berg, W.A.M.1    Hagen, W.R.2    Van Dongen, W.M.A.M.3
  • 49
    • 72849153396 scopus 로고    scopus 로고
    • Sulfide remediation by pulsed injection of nitrate into a low temperature Canadian heavy oil reservoir
    • Voordouw G, Grigoryan AA, Lambo A, Lin SP, Park HS, Jack TR et al. (2009). Sulfide remediation by pulsed injection of nitrate into a low temperature Canadian heavy oil reservoir. Environ Sci Technol 43: 9512-9518.
    • (2009) Environ Sci Technol , vol.43 , pp. 9512-9518
    • Voordouw, G.1    Grigoryan, A.A.2    Lambo, A.3    Lin, S.P.4    Park, H.S.5    Jack, T.R.6
  • 51
    • 34548482369 scopus 로고    scopus 로고
    • Evaluation of stress response in sulphate-reducing bacteria through genome analysis
    • Barton LL, Hamilton WA (eds). Cambridge University Press: Cambridge, UK
    • Wall JD, Yen H-CB, Drury EC. (2007). Evaluation of stress response in sulphate-reducing bacteria through genome analysis. In: Barton LL, Hamilton WA (eds). Sulphate-Reducing Bacteria: Environmental and Engineered Systems. Cambridge University Press: Cambridge, UK. pp 141-165.
    • (2007) Sulphate-Reducing Bacteria: Environmental and Engineered Systems , pp. 141-165
    • Wall, J.D.1    H-Cb, Y.2    Drury, E.C.3
  • 52
    • 33847635732 scopus 로고    scopus 로고
    • S-adenosylmethionine as an oxidant: The radical SAM superfamily
    • Wang SC, Frey PA. (2007). S-adenosylmethionine as an oxidant: the radical SAM superfamily. Trends Biochem Sci 32: 101-110.
    • (2007) Trends Biochem Sci , vol.32 , pp. 101-110
    • Wang, S.C.1    Frey, P.A.2
  • 53
    • 20844453037 scopus 로고    scopus 로고
    • Global proteome discovery using an online threedimensional LC-MS/MS
    • Wei J, Sun J, YuW, Jones A, Oeller P, Keller M et al. (2005). Global proteome discovery using an online threedimensional LC-MS/MS. J Proteome Res 4: 801-808.
    • (2005) J Proteome Res , vol.4 , pp. 801-808
    • Wei, J.1    Sun, J.2    Yu, W.3    Jones, A.4    Oeller, P.5    Keller, M.6
  • 54
    • 0036837745 scopus 로고    scopus 로고
    • Hydroxylamine reductase activity of the hybrid cluster protein from Escherichia coli
    • Wolfe MT, Heo J, Garavelli JS, Ludden PW. (2002). Hydroxylamine reductase activity of the hybrid cluster protein from Escherichia coli. J Bacteriol 184: 5898-5902.
    • (2002) J Bacteriol , vol.184 , pp. 5898-5902
    • Wolfe, M.T.1    Heo, J.2    Garavelli, J.S.3    Ludden, P.W.4
  • 55
    • 0035582244 scopus 로고    scopus 로고
    • An automated multidimensional protein identification technology for shotgun proteomics
    • Wolters DA, Washburn MP, Yates III JRY. (2001). An automated multidimensional protein identification technology for shotgun proteomics. Anal Chem 73: 5683-5690.
    • (2001) Anal Chem , vol.73 , pp. 5683-5690
    • Wolters, D.A.1    Washburn, M.P.2    Yates III, J.R.Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.