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1
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33744913067
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SERDP and ESTCP final report: expert panel workshop on research and development needs for the environmental remediation application of molecular biological tools. US Department of Defense; SERDP & ESTCP, October 2005. URL: http://docs.serdp-estcp.org/viewfile.cfm?Doc=MBT%20Workshop%20Report%2Epdf.
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2
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33744912018
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Carbon isotopic evidence for biodegradation of organic contaminants in the shallow vadose zone of the Radioactive Waste Management complex
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Conrad M.E., and DePaolo D.J. Carbon isotopic evidence for biodegradation of organic contaminants in the shallow vadose zone of the Radioactive Waste Management complex. Vadose Zone Journal 3 (2004) 143-153
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(2004)
Vadose Zone Journal
, vol.3
, pp. 143-153
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Conrad, M.E.1
DePaolo, D.J.2
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3
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25144499172
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A new concept linking observable stable isotope fractionation to transformation pathways of organic pollutants
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The authors present a thorough analysis of the pitfalls of compound-specific isotope analyses and suggest ways to maximize pathway analyses in complex field situations.
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Elsner M., Zwank L., Hunkeler D., and Schwarzenbach R.P. A new concept linking observable stable isotope fractionation to transformation pathways of organic pollutants. Environ Sci Technol 39 (2005) 6896-6916. The authors present a thorough analysis of the pitfalls of compound-specific isotope analyses and suggest ways to maximize pathway analyses in complex field situations.
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(2005)
Environ Sci Technol
, vol.39
, pp. 6896-6916
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Elsner, M.1
Zwank, L.2
Hunkeler, D.3
Schwarzenbach, R.P.4
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4
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28244484693
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Developments in bioremediation of soils and sediments polluted with metals and radionuclides: 2. Field research on bioremediation of metals and radionuclides
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Hazen T.C., and Tabak H.H. Developments in bioremediation of soils and sediments polluted with metals and radionuclides: 2. Field research on bioremediation of metals and radionuclides. Rev Environ Sci Biol/Technol 4 (2005) 157-183
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(2005)
Rev Environ Sci Biol/Technol
, vol.4
, pp. 157-183
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Hazen, T.C.1
Tabak, H.H.2
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5
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2942627079
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Compound-specific stable isotope analysis of organic contaminants in natural environments: a critical review of the state of the art, prospects, and future challenges
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This paper provides a good review of compound-specific stable isotope analyses of contaminants and electron acceptors.
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Schmidt T.C., Zwank L., Elsner M., Berg M., Meckenstock R.U., and Haderlein S.B. Compound-specific stable isotope analysis of organic contaminants in natural environments: a critical review of the state of the art, prospects, and future challenges. Anal Bioanal Chem 378 (2004) 283-300. This paper provides a good review of compound-specific stable isotope analyses of contaminants and electron acceptors.
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(2004)
Anal Bioanal Chem
, vol.378
, pp. 283-300
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Schmidt, T.C.1
Zwank, L.2
Elsner, M.3
Berg, M.4
Meckenstock, R.U.5
Haderlein, S.B.6
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6
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10644293208
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Sulfur isotope fractionation during growth of sulfate-reducing bacteria on various carbon sources
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Kleikemper J., Schroth M.H., Bernasconi S.M., Brunner B., and Zeyer J. Sulfur isotope fractionation during growth of sulfate-reducing bacteria on various carbon sources. Geochim Cosmochim Acta 68 (2004) 4891-4904
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(2004)
Geochim Cosmochim Acta
, vol.68
, pp. 4891-4904
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Kleikemper, J.1
Schroth, M.H.2
Bernasconi, S.M.3
Brunner, B.4
Zeyer, J.5
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7
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22044451333
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Stable isotope evidence for biodegradation of chlorinated ethenes at a fractured bedrock site
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Chartrand M.M.G., Morrill P.L., Lacrampe-Couloume G., and Lollar B.S. Stable isotope evidence for biodegradation of chlorinated ethenes at a fractured bedrock site. Environ Sci Technol 39 (2005) 4848-4856
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(2005)
Environ Sci Technol
, vol.39
, pp. 4848-4856
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Chartrand, M.M.G.1
Morrill, P.L.2
Lacrampe-Couloume, G.3
Lollar, B.S.4
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8
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10944244683
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Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated acquifers
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This paper is a very thorough review of the latest techniques in stable isotope analyses for monitoring biodegradation in aquifers.
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Meckenstock R.U., Morasch B., Griebler C., and Richnow H.H. Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated acquifers. J Contam Hydrol 75 (2004) 215-255. This paper is a very thorough review of the latest techniques in stable isotope analyses for monitoring biodegradation in aquifers.
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(2004)
J Contam Hydrol
, vol.75
, pp. 215-255
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Meckenstock, R.U.1
Morasch, B.2
Griebler, C.3
Richnow, H.H.4
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9
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0000267002
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Population studies - animal ecology and demography - concluding remarks
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Hutchinson G.E. Population studies - animal ecology and demography - concluding remarks. Cold Spring Harb Symp Quant Biol 22 (1957) 415-427
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(1957)
Cold Spring Harb Symp Quant Biol
, vol.22
, pp. 415-427
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Hutchinson, G.E.1
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10
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33644947596
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Exocellular electron transfer in anaerobic microbial communities
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Stams A.J.M., de Bok F.A.M., Plugge C.M., van Eekert M.H.A., Dolfing J., and Schraa G. Exocellular electron transfer in anaerobic microbial communities. Environ Microbiol 8 (2006) 371-382
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(2006)
Environ Microbiol
, vol.8
, pp. 371-382
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Stams, A.J.M.1
de Bok, F.A.M.2
Plugge, C.M.3
van Eekert, M.H.A.4
Dolfing, J.5
Schraa, G.6
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11
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25144472050
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Metabolic interactions in methanogenic and sulfate-reducing bioreactors
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Stams A.J.M., Plugge C.M., de Bok F.A.M., van Houten B.H.G.W., Lens P., Dijkman H., and Weijma J. Metabolic interactions in methanogenic and sulfate-reducing bioreactors. Water Sci Technol 52 (2005) 13-20
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(2005)
Water Sci Technol
, vol.52
, pp. 13-20
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Stams, A.J.M.1
Plugge, C.M.2
de Bok, F.A.M.3
van Houten, B.H.G.W.4
Lens, P.5
Dijkman, H.6
Weijma, J.7
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12
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16244383237
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The role of syntrophic associations in sustaining anaerobic mineralization of chlorinated organic compounds
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The authors demonstrate the syntrophic association in an complex anaerobic community that enable bacteria to overcome certain stressors.
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Becker J.G., Berardesco G., Rittmann B.E., and Stahl D.A. The role of syntrophic associations in sustaining anaerobic mineralization of chlorinated organic compounds. Environ Health Perspect 113 (2005) 310-316. The authors demonstrate the syntrophic association in an complex anaerobic community that enable bacteria to overcome certain stressors.
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(2005)
Environ Health Perspect
, vol.113
, pp. 310-316
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Becker, J.G.1
Berardesco, G.2
Rittmann, B.E.3
Stahl, D.A.4
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14
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0344235398
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Transcriptional regulation and posttranslational activity of the betaine transporter BetL in Listeria monocytogenes are controlled by environmental salinity
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Sleator R.D., Wood J.M., and Hill C. Transcriptional regulation and posttranslational activity of the betaine transporter BetL in Listeria monocytogenes are controlled by environmental salinity. J Bacteriol 185 (2003) 7140-7144
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(2003)
J Bacteriol
, vol.185
, pp. 7140-7144
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Sleator, R.D.1
Wood, J.M.2
Hill, C.3
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15
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17444403921
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Metabolic monitoring by bacterial mRNAs
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Winkler W.C. Metabolic monitoring by bacterial mRNAs. Arch Microbiol 183 (2005) 151-159
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(2005)
Arch Microbiol
, vol.183
, pp. 151-159
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Winkler, W.C.1
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16
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31144471322
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Bacterial stress responses: what doesn't kill them makes them stronger
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A good review of the concepts of bacterial stress response.
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Boor K.J. Bacterial stress responses: what doesn't kill them makes them stronger. PLoS Biol 4 (2006) 18-19. A good review of the concepts of bacterial stress response.
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(2006)
PLoS Biol
, vol.4
, pp. 18-19
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Boor, K.J.1
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17
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31144454629
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Conserved and variable functions of the Sigma E stress response in related genomes
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An excellent paper comparing Sigma E stress response in a variety of bacteria.
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Rhodius V., Suh W.C., Nonaka G., West J., and Gross C.A. Conserved and variable functions of the Sigma E stress response in related genomes. PLoS Biol 4 (2006) 43-59. An excellent paper comparing Sigma E stress response in a variety of bacteria.
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(2006)
PLoS Biol
, vol.4
, pp. 43-59
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Rhodius, V.1
Suh, W.C.2
Nonaka, G.3
West, J.4
Gross, C.A.5
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18
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7244234565
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Stress responsive bacteria: biosensors as environmental monitors
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Vollmer A.C., and van Dyke T.K. Stress responsive bacteria: biosensors as environmental monitors. Adv Microb Physiol 49 (2004) 131-174
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(2004)
Adv Microb Physiol
, vol.49
, pp. 131-174
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Vollmer, A.C.1
van Dyke, T.K.2
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19
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33644748620
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Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough
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One of the first papers to demonstrate stress response pathways using a systems biology approach.
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Chhabra S.R., He Q., Huang K.H., Gaucher S.P., Alm E.J., He Z., Hadi M.Z., Hazen T.C., Wall J.D., Zhou J., et al. Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J Bacteriol 188 (2006) 1817-1828. One of the first papers to demonstrate stress response pathways using a systems biology approach.
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(2006)
J Bacteriol
, vol.188
, pp. 1817-1828
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Chhabra, S.R.1
He, Q.2
Huang, K.H.3
Gaucher, S.P.4
Alm, E.J.5
He, Z.6
Hadi, M.Z.7
Hazen, T.C.8
Wall, J.D.9
Zhou, J.10
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20
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24944534787
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The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition
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Wardle S.J., O'Carroll M., Derbyshire K.M., and Haniford D.B. The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition. Genes Dev 19 (2005) 2224-2235
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(2005)
Genes Dev
, vol.19
, pp. 2224-2235
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Wardle, S.J.1
O'Carroll, M.2
Derbyshire, K.M.3
Haniford, D.B.4
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21
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10444268971
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In situ expression of nifD in Geobacteraceae in subsurface sediments
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Holmes D.E., Nevin K.P., and Lovley D.R. In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl Environ Microbiol 70 (2004) 7251-7259
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(2004)
Appl Environ Microbiol
, vol.70
, pp. 7251-7259
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Holmes, D.E.1
Nevin, K.P.2
Lovley, D.R.3
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22
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0037210672
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Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria
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Chardin B., Dolla A., Chaspoul F., Fardeau M.L., Gallice P., and Bruschi M. Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria. Appl Microbiol Biotechnol 60 (2002) 352-360
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(2002)
Appl Microbiol Biotechnol
, vol.60
, pp. 352-360
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Chardin, B.1
Dolla, A.2
Chaspoul, F.3
Fardeau, M.L.4
Gallice, P.5
Bruschi, M.6
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23
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0037101942
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Development, operation, and long-term performance of a full-scale biocurtain utilizing bioaugmentation
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Dybas M.J., Hyndman D.W., Heine R., Tiedje J., Linning K., Wiggert D., Voice T., Zhao X., Dybas L., and Criddle C.S. Development, operation, and long-term performance of a full-scale biocurtain utilizing bioaugmentation. Environ Sci Technol 36 (2002) 3635-3644
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(2002)
Environ Sci Technol
, vol.36
, pp. 3635-3644
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Dybas, M.J.1
Hyndman, D.W.2
Heine, R.3
Tiedje, J.4
Linning, K.5
Wiggert, D.6
Voice, T.7
Zhao, X.8
Dybas, L.9
Criddle, C.S.10
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24
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29944441670
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Bacterial growth and substrate degradation by BTX-oxidizing culture in response to salt stress
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Lee C.Y., and Lin C.H. Bacterial growth and substrate degradation by BTX-oxidizing culture in response to salt stress. J Ind Microbiol Biotechnol 33 (2006) 37-44
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(2006)
J Ind Microbiol Biotechnol
, vol.33
, pp. 37-44
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Lee, C.Y.1
Lin, C.H.2
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25
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0036024730
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Evaluating the role of microbial stress response mechanisms in causing biological treatment system upset
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Love N.G., and Bott C.B. Evaluating the role of microbial stress response mechanisms in causing biological treatment system upset. Water Sci Technol 46 (2002) 11-18
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(2002)
Water Sci Technol
, vol.46
, pp. 11-18
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Love, N.G.1
Bott, C.B.2
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27
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17044373656
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The role of sigmaB in the stress response of Gram-positive bacteria - targets for food preservation and safety
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van Schaik W., and Abee T. The role of sigmaB in the stress response of Gram-positive bacteria - targets for food preservation and safety. Curr Opin Biotechnol 16 (2005) 218-224
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(2005)
Curr Opin Biotechnol
, vol.16
, pp. 218-224
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van Schaik, W.1
Abee, T.2
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28
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3042563606
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Off-line monitoring of bacterial stress response during recombinant protein production using an optical biosensor
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Vostiar I., Tkac J., and Mandenius C.F. Off-line monitoring of bacterial stress response during recombinant protein production using an optical biosensor. J Biotechnol 111 (2004) 191-201
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(2004)
J Biotechnol
, vol.111
, pp. 191-201
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Vostiar, I.1
Tkac, J.2
Mandenius, C.F.3
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29
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4644345295
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Geochemical rate-RNA integrated study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs
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This is one of the first papers to infer carbon dioxide fixation rates in marine systems using an RNA-based tool.
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Corredor J.E., Wawrik B., Paul J.H., Tran H., Kerkhof L., Lopez J.M., Dieppa A., and Cardenas O. Geochemical rate-RNA integrated study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs. Appl Environ Microbiol 70 (2004) 5459-5468. This is one of the first papers to infer carbon dioxide fixation rates in marine systems using an RNA-based tool.
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(2004)
Appl Environ Microbiol
, vol.70
, pp. 5459-5468
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Corredor, J.E.1
Wawrik, B.2
Paul, J.H.3
Tran, H.4
Kerkhof, L.5
Lopez, J.M.6
Dieppa, A.7
Cardenas, O.8
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30
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0035238721
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The immunochemical detection of stress protein expression in activated sludge exposed to toxic chemicals
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Bott C.B., and Love N.G. The immunochemical detection of stress protein expression in activated sludge exposed to toxic chemicals. Water Res 35 (2001) 91-100
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(2001)
Water Res
, vol.35
, pp. 91-100
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Bott, C.B.1
Love, N.G.2
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