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Volumn 17, Issue 3, 2006, Pages 285-290

Using the stress response to monitor process control: pathways to more effective bioremediation

Author keywords

[No Author keywords available]

Indexed keywords

BIOREMEDIATION; BIOTECHNOLOGY; CONTAMINATION; MICROORGANISMS; PROCESS CONTROL;

EID: 33744937908     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.copbio.2006.03.004     Document Type: Review
Times cited : (24)

References (30)
  • 1
    • 33744913067 scopus 로고    scopus 로고
    • SERDP and ESTCP final report: expert panel workshop on research and development needs for the environmental remediation application of molecular biological tools. US Department of Defense; SERDP & ESTCP, October 2005. URL: http://docs.serdp-estcp.org/viewfile.cfm?Doc=MBT%20Workshop%20Report%2Epdf.
  • 2
    • 33744912018 scopus 로고    scopus 로고
    • Carbon isotopic evidence for biodegradation of organic contaminants in the shallow vadose zone of the Radioactive Waste Management complex
    • Conrad M.E., and DePaolo D.J. Carbon isotopic evidence for biodegradation of organic contaminants in the shallow vadose zone of the Radioactive Waste Management complex. Vadose Zone Journal 3 (2004) 143-153
    • (2004) Vadose Zone Journal , vol.3 , pp. 143-153
    • Conrad, M.E.1    DePaolo, D.J.2
  • 3
    • 25144499172 scopus 로고    scopus 로고
    • A new concept linking observable stable isotope fractionation to transformation pathways of organic pollutants
    • The authors present a thorough analysis of the pitfalls of compound-specific isotope analyses and suggest ways to maximize pathway analyses in complex field situations.
    • Elsner M., Zwank L., Hunkeler D., and Schwarzenbach R.P. A new concept linking observable stable isotope fractionation to transformation pathways of organic pollutants. Environ Sci Technol 39 (2005) 6896-6916. The authors present a thorough analysis of the pitfalls of compound-specific isotope analyses and suggest ways to maximize pathway analyses in complex field situations.
    • (2005) Environ Sci Technol , vol.39 , pp. 6896-6916
    • Elsner, M.1    Zwank, L.2    Hunkeler, D.3    Schwarzenbach, R.P.4
  • 4
    • 28244484693 scopus 로고    scopus 로고
    • Developments in bioremediation of soils and sediments polluted with metals and radionuclides: 2. Field research on bioremediation of metals and radionuclides
    • Hazen T.C., and Tabak H.H. Developments in bioremediation of soils and sediments polluted with metals and radionuclides: 2. Field research on bioremediation of metals and radionuclides. Rev Environ Sci Biol/Technol 4 (2005) 157-183
    • (2005) Rev Environ Sci Biol/Technol , vol.4 , pp. 157-183
    • Hazen, T.C.1    Tabak, H.H.2
  • 5
    • 2942627079 scopus 로고    scopus 로고
    • Compound-specific stable isotope analysis of organic contaminants in natural environments: a critical review of the state of the art, prospects, and future challenges
    • This paper provides a good review of compound-specific stable isotope analyses of contaminants and electron acceptors.
    • Schmidt T.C., Zwank L., Elsner M., Berg M., Meckenstock R.U., and Haderlein S.B. Compound-specific stable isotope analysis of organic contaminants in natural environments: a critical review of the state of the art, prospects, and future challenges. Anal Bioanal Chem 378 (2004) 283-300. This paper provides a good review of compound-specific stable isotope analyses of contaminants and electron acceptors.
    • (2004) Anal Bioanal Chem , vol.378 , pp. 283-300
    • Schmidt, T.C.1    Zwank, L.2    Elsner, M.3    Berg, M.4    Meckenstock, R.U.5    Haderlein, S.B.6
  • 6
    • 10644293208 scopus 로고    scopus 로고
    • Sulfur isotope fractionation during growth of sulfate-reducing bacteria on various carbon sources
    • Kleikemper J., Schroth M.H., Bernasconi S.M., Brunner B., and Zeyer J. Sulfur isotope fractionation during growth of sulfate-reducing bacteria on various carbon sources. Geochim Cosmochim Acta 68 (2004) 4891-4904
    • (2004) Geochim Cosmochim Acta , vol.68 , pp. 4891-4904
    • Kleikemper, J.1    Schroth, M.H.2    Bernasconi, S.M.3    Brunner, B.4    Zeyer, J.5
  • 7
    • 22044451333 scopus 로고    scopus 로고
    • Stable isotope evidence for biodegradation of chlorinated ethenes at a fractured bedrock site
    • Chartrand M.M.G., Morrill P.L., Lacrampe-Couloume G., and Lollar B.S. Stable isotope evidence for biodegradation of chlorinated ethenes at a fractured bedrock site. Environ Sci Technol 39 (2005) 4848-4856
    • (2005) Environ Sci Technol , vol.39 , pp. 4848-4856
    • Chartrand, M.M.G.1    Morrill, P.L.2    Lacrampe-Couloume, G.3    Lollar, B.S.4
  • 8
    • 10944244683 scopus 로고    scopus 로고
    • Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated acquifers
    • This paper is a very thorough review of the latest techniques in stable isotope analyses for monitoring biodegradation in aquifers.
    • Meckenstock R.U., Morasch B., Griebler C., and Richnow H.H. Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated acquifers. J Contam Hydrol 75 (2004) 215-255. This paper is a very thorough review of the latest techniques in stable isotope analyses for monitoring biodegradation in aquifers.
    • (2004) J Contam Hydrol , vol.75 , pp. 215-255
    • Meckenstock, R.U.1    Morasch, B.2    Griebler, C.3    Richnow, H.H.4
  • 9
    • 0000267002 scopus 로고
    • Population studies - animal ecology and demography - concluding remarks
    • Hutchinson G.E. Population studies - animal ecology and demography - concluding remarks. Cold Spring Harb Symp Quant Biol 22 (1957) 415-427
    • (1957) Cold Spring Harb Symp Quant Biol , vol.22 , pp. 415-427
    • Hutchinson, G.E.1
  • 12
    • 16244383237 scopus 로고    scopus 로고
    • The role of syntrophic associations in sustaining anaerobic mineralization of chlorinated organic compounds
    • The authors demonstrate the syntrophic association in an complex anaerobic community that enable bacteria to overcome certain stressors.
    • Becker J.G., Berardesco G., Rittmann B.E., and Stahl D.A. The role of syntrophic associations in sustaining anaerobic mineralization of chlorinated organic compounds. Environ Health Perspect 113 (2005) 310-316. The authors demonstrate the syntrophic association in an complex anaerobic community that enable bacteria to overcome certain stressors.
    • (2005) Environ Health Perspect , vol.113 , pp. 310-316
    • Becker, J.G.1    Berardesco, G.2    Rittmann, B.E.3    Stahl, D.A.4
  • 14
    • 0344235398 scopus 로고    scopus 로고
    • Transcriptional regulation and posttranslational activity of the betaine transporter BetL in Listeria monocytogenes are controlled by environmental salinity
    • Sleator R.D., Wood J.M., and Hill C. Transcriptional regulation and posttranslational activity of the betaine transporter BetL in Listeria monocytogenes are controlled by environmental salinity. J Bacteriol 185 (2003) 7140-7144
    • (2003) J Bacteriol , vol.185 , pp. 7140-7144
    • Sleator, R.D.1    Wood, J.M.2    Hill, C.3
  • 15
    • 17444403921 scopus 로고    scopus 로고
    • Metabolic monitoring by bacterial mRNAs
    • Winkler W.C. Metabolic monitoring by bacterial mRNAs. Arch Microbiol 183 (2005) 151-159
    • (2005) Arch Microbiol , vol.183 , pp. 151-159
    • Winkler, W.C.1
  • 16
    • 31144471322 scopus 로고    scopus 로고
    • Bacterial stress responses: what doesn't kill them makes them stronger
    • A good review of the concepts of bacterial stress response.
    • Boor K.J. Bacterial stress responses: what doesn't kill them makes them stronger. PLoS Biol 4 (2006) 18-19. A good review of the concepts of bacterial stress response.
    • (2006) PLoS Biol , vol.4 , pp. 18-19
    • Boor, K.J.1
  • 17
    • 31144454629 scopus 로고    scopus 로고
    • Conserved and variable functions of the Sigma E stress response in related genomes
    • An excellent paper comparing Sigma E stress response in a variety of bacteria.
    • Rhodius V., Suh W.C., Nonaka G., West J., and Gross C.A. Conserved and variable functions of the Sigma E stress response in related genomes. PLoS Biol 4 (2006) 43-59. An excellent paper comparing Sigma E stress response in a variety of bacteria.
    • (2006) PLoS Biol , vol.4 , pp. 43-59
    • Rhodius, V.1    Suh, W.C.2    Nonaka, G.3    West, J.4    Gross, C.A.5
  • 18
    • 7244234565 scopus 로고    scopus 로고
    • Stress responsive bacteria: biosensors as environmental monitors
    • Vollmer A.C., and van Dyke T.K. Stress responsive bacteria: biosensors as environmental monitors. Adv Microb Physiol 49 (2004) 131-174
    • (2004) Adv Microb Physiol , vol.49 , pp. 131-174
    • Vollmer, A.C.1    van Dyke, T.K.2
  • 19
    • 33644748620 scopus 로고    scopus 로고
    • Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough
    • One of the first papers to demonstrate stress response pathways using a systems biology approach.
    • Chhabra S.R., He Q., Huang K.H., Gaucher S.P., Alm E.J., He Z., Hadi M.Z., Hazen T.C., Wall J.D., Zhou J., et al. Global analysis of heat shock response in Desulfovibrio vulgaris Hildenborough. J Bacteriol 188 (2006) 1817-1828. One of the first papers to demonstrate stress response pathways using a systems biology approach.
    • (2006) J Bacteriol , vol.188 , pp. 1817-1828
    • Chhabra, S.R.1    He, Q.2    Huang, K.H.3    Gaucher, S.P.4    Alm, E.J.5    He, Z.6    Hadi, M.Z.7    Hazen, T.C.8    Wall, J.D.9    Zhou, J.10
  • 20
    • 24944534787 scopus 로고    scopus 로고
    • The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition
    • Wardle S.J., O'Carroll M., Derbyshire K.M., and Haniford D.B. The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition. Genes Dev 19 (2005) 2224-2235
    • (2005) Genes Dev , vol.19 , pp. 2224-2235
    • Wardle, S.J.1    O'Carroll, M.2    Derbyshire, K.M.3    Haniford, D.B.4
  • 21
    • 10444268971 scopus 로고    scopus 로고
    • In situ expression of nifD in Geobacteraceae in subsurface sediments
    • Holmes D.E., Nevin K.P., and Lovley D.R. In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl Environ Microbiol 70 (2004) 7251-7259
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7251-7259
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 22
    • 0037210672 scopus 로고    scopus 로고
    • Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria
    • Chardin B., Dolla A., Chaspoul F., Fardeau M.L., Gallice P., and Bruschi M. Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria. Appl Microbiol Biotechnol 60 (2002) 352-360
    • (2002) Appl Microbiol Biotechnol , vol.60 , pp. 352-360
    • Chardin, B.1    Dolla, A.2    Chaspoul, F.3    Fardeau, M.L.4    Gallice, P.5    Bruschi, M.6
  • 24
    • 29944441670 scopus 로고    scopus 로고
    • Bacterial growth and substrate degradation by BTX-oxidizing culture in response to salt stress
    • Lee C.Y., and Lin C.H. Bacterial growth and substrate degradation by BTX-oxidizing culture in response to salt stress. J Ind Microbiol Biotechnol 33 (2006) 37-44
    • (2006) J Ind Microbiol Biotechnol , vol.33 , pp. 37-44
    • Lee, C.Y.1    Lin, C.H.2
  • 25
    • 0036024730 scopus 로고    scopus 로고
    • Evaluating the role of microbial stress response mechanisms in causing biological treatment system upset
    • Love N.G., and Bott C.B. Evaluating the role of microbial stress response mechanisms in causing biological treatment system upset. Water Sci Technol 46 (2002) 11-18
    • (2002) Water Sci Technol , vol.46 , pp. 11-18
    • Love, N.G.1    Bott, C.B.2
  • 26
    • 8144222263 scopus 로고    scopus 로고
    • Impact of genomics on microbial food safety
    • Abee T., van Schaik W., and Siezen R.J. Impact of genomics on microbial food safety. Trends Biotechnol 22 (2004) 653-660
    • (2004) Trends Biotechnol , vol.22 , pp. 653-660
    • Abee, T.1    van Schaik, W.2    Siezen, R.J.3
  • 27
    • 17044373656 scopus 로고    scopus 로고
    • The role of sigmaB in the stress response of Gram-positive bacteria - targets for food preservation and safety
    • van Schaik W., and Abee T. The role of sigmaB in the stress response of Gram-positive bacteria - targets for food preservation and safety. Curr Opin Biotechnol 16 (2005) 218-224
    • (2005) Curr Opin Biotechnol , vol.16 , pp. 218-224
    • van Schaik, W.1    Abee, T.2
  • 28
    • 3042563606 scopus 로고    scopus 로고
    • Off-line monitoring of bacterial stress response during recombinant protein production using an optical biosensor
    • Vostiar I., Tkac J., and Mandenius C.F. Off-line monitoring of bacterial stress response during recombinant protein production using an optical biosensor. J Biotechnol 111 (2004) 191-201
    • (2004) J Biotechnol , vol.111 , pp. 191-201
    • Vostiar, I.1    Tkac, J.2    Mandenius, C.F.3
  • 29
    • 4644345295 scopus 로고    scopus 로고
    • Geochemical rate-RNA integrated study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs
    • This is one of the first papers to infer carbon dioxide fixation rates in marine systems using an RNA-based tool.
    • Corredor J.E., Wawrik B., Paul J.H., Tran H., Kerkhof L., Lopez J.M., Dieppa A., and Cardenas O. Geochemical rate-RNA integrated study: ribulose-1,5-bisphosphate carboxylase/oxygenase gene transcription and photosynthetic capacity of planktonic photoautotrophs. Appl Environ Microbiol 70 (2004) 5459-5468. This is one of the first papers to infer carbon dioxide fixation rates in marine systems using an RNA-based tool.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5459-5468
    • Corredor, J.E.1    Wawrik, B.2    Paul, J.H.3    Tran, H.4    Kerkhof, L.5    Lopez, J.M.6    Dieppa, A.7    Cardenas, O.8
  • 30
    • 0035238721 scopus 로고    scopus 로고
    • The immunochemical detection of stress protein expression in activated sludge exposed to toxic chemicals
    • Bott C.B., and Love N.G. The immunochemical detection of stress protein expression in activated sludge exposed to toxic chemicals. Water Res 35 (2001) 91-100
    • (2001) Water Res , vol.35 , pp. 91-100
    • Bott, C.B.1    Love, N.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.