Nitrate and nitrite utilization in sulfate-reducing bacteria

Anaerobe

Volumn 3, Issue 5, 1997, Pages 279-290

  Moura, Isabel ^a   Bursakov, Sergey ^a,b   Costa, Cristina ^a   Moura, José J G ^a  

^a UNIVERSIDADE NOVA DE LISBOA   (Portugal)

^b BACH INSTITUTE OF BIOCHEMISTRY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; BACTERIAL ENZYME; COPPER; HEME; MOLYBDENUM; NITRATE; NITRATE REDUCTASE; NITRITE; NITRITE REDUCTASE;

ANAEROBIC METABOLISM; BACTERIAL METABOLISM; DESULFOVIBRIO; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME STRUCTURE; NONHUMAN; PRIORITY JOURNAL; REDUCTION; REVIEW; SULFATE REDUCING BACTERIUM;

EID: 0031253537     PISSN: 10759964     EISSN: None     Source Type: Journal    
DOI: 10.1006/anae.1997.0093     Document Type: Review

References (65)

1. Postgate J. R. The Sulphate-reducing Bacteria. 1984;Cambridge University Press, Cambridge.
2. Fauque G. Ecology of sulfate-reducing bacteria. Sulfate-reducing Bacteria. 1995;Plenum Press, New York.
3. Fauque G., LeGall J., Barton L. L. Shiverley J. M., Barton L. L. Sulfate-Reducing and Sulfur-reducing Bacteria - Variation in Autotrophic Life. 1991;Academic Press, London.
4. Lie T. G., Pitta T., Leadbetter E. R., Godchaux W., Leadbetter J. R. Sulfonates: novel electron acceptors in anaerobic respiration. Arch Microbiol. 166:1996;204-210.
5. Deshmane V., Lee C. M., Sublette K. L. Microbial reduction of sulfur dioxide with pretreated sewage sludge and elemental hydrogen as electron donors. Appl Biochem Biotechnol. 39-40:1993;739-752.
6. DeWeerd K. A., Concannon F., Suflita J. M. Relationship between hydrogen consumption dehalogenation, and the reduction of sulfur oxyanions by Desulfomonile tiedjei. Appl Environ Microbiol. 57:1991;1929-1934.
7. Lovley D. R. Dissimilatory metal reduction. Annu. Rev. Microbiol. 47:1993;263-290.
8. Roden, E. E. Lovley, D. R. Dissimilatory Fe(III) reduction by the marine microorganism,Desulfomonas acetoxidans, Appl. Environ. Microbiol. 59, 734, 742.
9. Senez J. C., Pichinoty F. Reduction of nitrite by molecular hydrogen byDesulfovibrio desulfovicans. Bull. Soc. Chim. Bio. Paris. 40:1958;2099-2117.
10. Liu M. C., Peck H. D.Jr. The isolation of a hexaheme cytochrome fromDesulfovibrio desulfuricans. J. Biol. Chem. 256:1981;13159-13164.
11. McCready R. G.L., Gould W. D., Cook F. D. Nitrogen isotope fractionation during the reduction of nitrate to ammonia byDesulfovibrio. Arch. Microbiol. 135:1983;182-185.
12. Odom J. M., Peck H. D.Jr. Localization of dehydrogenases, reductases, and electron transfer components in the sulfate-reducing bacteriumDesulfovibrio gigas. J. Bacteriol. 147:1981;161-169.
13. Barton L. L., LeGall J., Odom J. M., Peck H. D.Jr. Energy coupling to nitrate respiration in the sulfate-reducing bacteriumDesulfovibrio gigas. J. Bacteriol. 153:1983;867-871.
14. Mitchell G. J., Jones J. G., Cole J. A. Distribution and regulation of nitrate and nitrite reduction by Desulfovibrio and Desulfotomaculum species. Arch. Microbiol. 144:1986;35-40.
15. Widdel F., Pfenning N. Studies of dissimilatory sulfate-reducing bacteria that decompose fatty acids. II. Incomplete oxidation of propionate byDesulfobulbus propionicus. Arch. Microbiol. 131:1982;360-365.
16. Widdel F., Pfenning N. Krieg N. R., Holt J. G. Bergy's Manual of Systematic Bacteriology. 1984;Williams and Wilkins Co. Baltimore.
17. Berks S. J., Ferguson S. J., Moir J. W.B., Richardson D. J. Enzymes and associated electron transport systems that catalyse the respiratory reduction of nitrogen oxides and oxianions. Biochem. Biophys. Acta. 1232:1995;97-173.
18. Rajagopalan K. V., Johnson J. L. The pterin molybdenum cofactors. J. Biol. Chem. 267:1992;10199-10202.
19. Bursakov S. A., Liu M.-Y., Payne W. J., LeGall J., Moura I., Moura J. J.G. Isolation and preliminary characterization of a soluble nitrate reductase from the sulfate reducing organismDesulfovibrio desulfuricans. Anaerobe. 1:1995;55-60.
20. Bursakov S. A., Carneiro C., Almendra M. J., Duarte R. O., Caldeira J., Moura I., Moura J. J.G. Enzymatic properties and effect of ionic strength on periplasmic nitrate reductase fromDesulfovibrio desulfuricans. Bioch. Biophys. Res. Comm. 1997.
21. Gangeswaran R., Lowe D. J., Eady R. R. Purification and characterization of the assimilatory nitrate reductase ofAzotobacter vinelandii. Biochem. J. 289:1993;335-342.
22. Breton J., Berks B. C., Reilly A., Thomson A. J., Ferguson S. G., Richardson D. J. Characterization of the paramagnetic iron-containing redox centers ofThiospaera pantotropha. FEBS Lett. 345:1994;76-80.
23. Bennett B., Berks B. C., Ferguson B. C., Thomson A. J., Richardson D. J. Mo(V) electron paramagnetic resonance signals from the periplasmic nitrate reductase ofThiospaera pantotropha. Eur. J. Bioch. 226:1994;789-798.
24. Richterich, P. Lakey, N. Gryan, G. Jaehn, L. Mintz, L. Robinson, K. Church, G. M. 1993.
25. Siddiqui R. A., Warnecke-Eberz U., Hengsberger A., Schneider B., Kostka S., Friedrich B. Structure and function of a periplasmic nitrate reductase inAlcaligenes eutrophus. J. Bacteriol. 175:1993;5867-5876.
26. Shuber A. P., Orr E. C., Recny M. A., Shendel P. F., May H. D., Schauer N. L., Ferry J. G. Cloning, expression and nucleotide sequence of the formate dehydrogenase genes fromMethanobacterium formicicum. J. Biol. Chem. 261:1986;12942-12947.
27. Lin J. T., Goldman, Stewart V. Structure of genesnasAnasBKlebsiella pneumoniae. J. Bacteriol. 175:1993;2370-2378.
28. Krafft T., Bokranz M., Klimmek O., Schroder I., Fahrenholz F., Kojro E., Kroger A. Cloning and nucleotide sequence of the psrA gene ofWolinella succinogenes. Eur. J. Bioch. 206:1992;503-510.
29. Berg B. L., Li J., Heider J., Stewart V. Nitrate-inducible formate dehydrogenase in Escherichia coli K-12. I. Nucleotide sequence of thefdnGHI. J. Biol. Chem. 1266:1991;22380-22385.
30. 44. Science. 275:1997;1305-1308.
31. Dias, J. M. Carneiro, C. Almendra, M. J. Moura, I. Moura, J. LeGall, J. Romão, M. J. 1996, Cristallization and preliminary X-ray analysis of a nitrate reductase fromDesulfovibrio desulfuricans.
32. Schumacher W., Kroneck P. M.H. Anaerobic energy-metabolism of the sulfur-reducing bacteriumSpirillum. Arch. Microbiol. 157:1992;464-470.
33. Brittain T., Blackmore R., Greenwood C., Thomson A. J. Bacterial nitrite-reducing enzymes. Eur. J. Biochem. 209:1992;793-802.
34. Newton N. The two haem nitrite reductase ofMicrococcus denitrificans. Biochim. Biophys. Acta. 185:1969;316-331.
35. Miyata M., Mori T. Studies on Denitrification - The "Denitrifying Enzyme" as a nitrite reductase and the electron donating system for denitrification. J. Biochem. 66:1969;463-471.
36. Hochstein L. I., Tomlinson G. A. The enzymes associated with denitrification. Annu. Rev. Microbiol. 42:1988;231-236.
37. 1. Cell. 81:1995;360-377.
38. Reid T. J., Murthy M. R.N., Sicignano A., Tanaka N., Musick W. D.L., Rossman M. G. Structure and heme environment of a beef-liver catalase at 2.5 Å resolution. Proc. Natl. Acad. Sci. USA. 78:1981;4767-4771.
39. Perutz M. F., Lehmann H. Molecular pathology of human haemoglobin. Nature. 219:1968;902-909.
40. Dickerson R. E., Geis I. Hemoglobin: Structure, Function, Evolution, and Pathology. 1983;Benjamin/Cummings, Menlo Park, CA.
41. Weatherall D. J., Clegg J. B., Higgs D. R., Wood W. G. Scriver C. R., Beaudet A. L., Sly W. S., Valle D. The Metabolic Basis of Inherited Diseases. 1989;McGraw Hill, New York.
42. -. J. Biol. Chem. 270:1995;27458-27474.
43. Kukimoto M., Nishiyama M., Murphy M. E.P., Turley S., Adman E. T., Horinouchi S., Beppu T. X-ray structure and site-directed mutagenesis of a nitrite reductase fromAlcaligenes faecalis. Biochem. 33:1994;5246-5252.
44. Crane B. R., Siegel L. M., Getzoff E. D. Sulfite reductase structure at 1.6 Å - evolution and catalysis for reduction of inorganic anions. Science. 270:1995;59-67.
45. de Vries W., Niekus H. G.D., Boellaard M., Stouthamer A. H. Growth yields and energy generation ofCampylobacter sputorumbubulus. Arch. Microbiol. 124:1980;221-227.
46. Liu M. C., Bakel B. W., Liu M. Y., Dao T. N. Purification ofVibrio fischeric. Arch. Biochem. Biophys. 262:1988;259-265.
47. Rehr B., Klemme J. H. Metabolic role and properties of nitrite reductase of nitrate-ammonifying marineVibrio. FEMS Microbiol. Lett. 35:1986;325-328.
48. Hadjipetrou L. P., Stouthamer A. H. Energy production during nitrate respiration byAerobacter aerogenes. J. Gen. Microbiol. 38:1965;29-34.
49. Hasan S. M., Hall J. B. The physiological function of nitrate reduction inClostridium perfringens. J. Gen. Microbiol. 87:1975;120-128.
50. Keith S. M., MacFarlane G. T., Herbert R. A. Dissimilatory nitrate reduction by a strain ofClostridium butyricum. Arch. Microbiol. 132:1982;62-66.
51. Liu M. C., Liu M.-Y., Payne W. J., Peck H. D., LeGall J. Wolinella succinogenes. FEMS Microbiol. Lett. 19:1983;201-206.
52. Schumacher W., Hole U., Kroneck P. M.H. Ammonia-forming cytochromecSulfurospirillum deleyianum. Biochem. Biophys. Res. Comm. 205:1994;911-916.
53. 552Escherichia coli. FEMS Lett. 10:1981;333-337.
54. 552Escherichia coli. Eur. J. Biochem. 154:1986;457-463.
55. Costa C., Macedo A., Moura I., Moura J. J.G., LeGall J., Berlier Y., Liu M.-Y., Payne W. J. Regulation of the hexaheme nitrite/nitric oxide reductase ofDesulfovibrio desulfuricans, Wolinella succinogenesEscherichia coli. FEBS Letts. 276:1990;67-70.
56. Heiss B., Frunzke K., Zumft W. G. Formation of the N-N bond from nitric oxide by a membrane bound cytochrome bc complex of nitrate respiring (denitrifying)Pseudomonas stutzeri. J. Bacteriol. 171:1989;3288.
57. Blackmore R. S., Brittain T., Gadsby P. M.A., Greenwood C., Thomson A. J. Electron paramagnetic resonance and magnetic circular dichroism studies of a hexa-heme nitrite reductase fromWolinella succinogenes. FEBS Lett. 219:1987;244-248.
58. Liu M. C., Liu M.-Y., Payne W. J., Peck H. D. Jr., LeGall J., DerVartanian D. V. Comparative EPR studies on the nitrite reductases fromEscherichia coliWolinella succinogenes. FEBS Lett. 218:1987;227-230.
59. 554Nitrosomonas europaea. J. Biol. Chem. 261:1986;1126-1138.
60. Costa C., Moura J. J.G., Moura I., Liu M.-Y., Peck H. D., Jr., LeGall J., Wang Y., Huynh B. H. Hexane nitrite reductase fromDesulfovibrio desulfuricans. J. Biol. Chem. 265:1990;14382-14387.
61. Costa C., Moura J. J.G., Moura I., Wang Y., Huynh B. H. Redox properties of cytochromecDesulfovibrio desulfuricans. J. Biol. Chem. 271:1996;23191-23196.
62. Costa, C. 1994, Caracterização espectroscópica de sistemas hémicos isolados deDesulfovibrio desulfuricans, Universidade Nova de Lisboa.
63. Pereira I. C., Abreu I. A., Xavier A. V., LeGall J., Teixeira M. Nitrite reductase fromDesulfovibrio desulfuricans. Biochem. Biophys. Res. Comm. 224:1996;611-618.
64. Moreno C., Costa C., Moura I., LeGall J., Liu M.-Y., Payne W. J., van Dijk C., Moura J. J.G. Electrochemical studies of the hexaheme nitrite reductase fromDesulfovibrio desulfuricans. Eur. J. Biochem. 212:1993;79-86.
65. Scharf M., Moreno C., Costa C., Van Dijk C., Payne W. J., LeGall J., Moura I., Moura J. J.G. Electrochemical studies on nitrite reductase towards a biosensor. Biochem. Biophys. Res. Com. 209:1995;1018-1025.