메뉴 건너뛰기




Volumn 6, Issue 2, 2009, Pages

Prediction and verification of mouse tRNA gene families

Author keywords

Mammalian tRNA; Nuclear tRNA; Rogue tRNAs; SINE; tRNA families; tRNA intron

Indexed keywords

RNA; TRANSFER RNA;

EID: 85011937496     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.6.2.8050     Document Type: Review
Times cited : (15)

References (29)
  • 1
    • 0024655771 scopus 로고
    • A functional analysis of the repeated methionine initiator tRNA genes (IMT) in yeast
    • Bystrom AS, Fink GR. A functional analysis of the repeated methionine initiator tRNA genes (IMT) in yeast. Mol Gen Genet 1989; 216:276-286
    • (1989) Mol Gen Genet , vol.216 , pp. 276-286
    • Bystrom, A.S.1    Fink, G.R.2
  • 2
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • DOI 10.1093/nar/gki012
    • Sprinzl M, Vassilenko KS. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 2005; 33:139-140 (Pubitemid 40207847)
    • (2005) Nucleic Acids Research , vol.33 , Issue.DATABASE ISS
    • Sprinzl, M.1    Vassilenko, K.S.2
  • 3
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • DOI 10.1093/nar/25.5.955
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25:955-964 (Pubitemid 27298263)
    • (1997) Nucleic Acids Research , vol.25 , Issue.5 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 5
    • 0036591885 scopus 로고    scopus 로고
    • SINEs and LINEs: The art of biting the hand that feeds you
    • DOI 10.1016/S0955-0674(02)00338-1
    • Weiner AM. SINEs and LINEs: the art of biting the hand that feeds you. Current opinion in cell biology 2002; 14:343-350 (Pubitemid 34626973)
    • (2002) Current Opinion in Cell Biology , vol.14 , Issue.3 , pp. 343-350
    • Weiner, A.M.1
  • 6
    • 33845635732 scopus 로고    scopus 로고
    • Diversity of tRNA genes in eukaryotes
    • DOI 10.1093/nar/gkl725
    • Goodenbour JM, Pan T. Diversity of tRNA genes in eukaryotes. Nucleic Acids Res 2006; 34:6137-6146 (Pubitemid 44942735)
    • (2006) Nucleic Acids Research , vol.34 , Issue.21 , pp. 6137-6146
    • Goodenbour, J.M.1    Pan, T.2
  • 7
    • 33846021292 scopus 로고    scopus 로고
    • Tissue-specific differences in human transfer RNA expression
    • DOI 10.1371/journal.pgen.0020221
    • Dittmar KA, Goodenbour JM, Pan T. Tissue-Specific Differences in Human Transfer RNA Expression. PLoS Genet 2006; 2:221. (Pubitemid 46045190)
    • (2006) PLoS Genetics , vol.2 , Issue.12 , pp. 2107-2115
    • Dittmar, K.A.1    Goodenbour, J.M.2    Pan, T.3
  • 8
    • 1242297827 scopus 로고    scopus 로고
    • ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
    • DOI 10.1093/nar/gkh152
    • Laslett D, Canback B. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 2004; 32:11-16 (Pubitemid 38228599)
    • (2004) Nucleic Acids Research , vol.32 , Issue.1 , pp. 11-16
    • Laslett, D.1    Canback, B.2
  • 10
    • 0028214356 scopus 로고
    • Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix anaylsis of transcriptional control regions
    • Pavesi A, Conterio F, Bolchi A, Dieci G, Ottonello S. Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions. Nucleic Acids Res 1994; 22:1247-1256 (Pubitemid 24984503)
    • (1994) Nucleic Acids Research , vol.22 , Issue.7 , pp. 1247-1256
    • Pavesi, A.1    Conterio, F.2    Bolchi, A.3    Dieci, G.4    Ottonello, S.5
  • 11
    • 0025864008 scopus 로고
    • Identifying potential tRNA genes in genomic DNA sequences
    • Fichant GA, Burks C. Identifying potential tRNA genes in genomic DNA sequences. J Mol Biol 1991; 220:659-671
    • (1991) J Mol Biol , vol.220 , pp. 659-671
    • Fichant, G.A.1    Burks, C.2
  • 12
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • Eddy SR, Durbin R. RNA sequence analysis using covariance models. Nucleic Acids Res 1994; 22:2079-2088 (Pubitemid 24192908)
    • (1994) Nucleic Acids Research , vol.22 , Issue.11 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 14
    • 0026232949 scopus 로고
    • Development stage-specific expression of fibroin in the silk worm Bombyx mori is regulated translationally
    • Patel CV, Gopinathan KP. Development stage-specific expression of fibroin in the silk worm Bombyx mori is regulated translationally. Indian journal of biochemistry & biophysics 1991; 28:521-530
    • (1991) Indian Journal of Biochemistry & Biophysics , vol.28 , pp. 521-530
    • Patel, C.V.1    Gopinathan, K.P.2
  • 15
    • 0024713267 scopus 로고
    • Oocyte and somatic tyrosine tRNA genes in Xenopus laevis
    • Stutz F, Gouilloud E, Clarkson SG. Oocyte and somatic tyrosine tRNA genes in Xenopus laevis. Genes & development 1989; 3:1190-1198
    • (1989) Genes & Development , vol.3 , pp. 1190-1198
    • Stutz, F.1    Gouilloud, E.2    Clarkson, S.G.3
  • 16
    • 0028121451 scopus 로고
    • Mouse selenocysteine tRNA([Ser]Sec) gene (Trsp) and its localization on chromosome 7
    • Ohama T, Choi IS, Hatfield DL, Johnson KR. Mouse selenocysteine tRNA([Ser]Sec) gene (Trsp) and its localization on chromosome 7. Genomics 1994; 19:595-596
    • (1994) Genomics , vol.19 , pp. 595-596
    • Ohama, T.1    Choi, I.S.2    Hatfield, D.L.3    Johnson, K.R.4
  • 17
    • 17644386866 scopus 로고    scopus 로고
    • The distal sequence element of the selenocysteine tRNA gene is a tissue-dependent enhancer essential for mouse embryogenesis
    • DOI 10.1128/MCB.25.9.3658-3669.2005
    • Kelly VP, Suzuki T, Nakajima O, Arai T, Tamai Y, Takahashi S, et al. The distal sequence element of the selenocysteine tRNA gene is a tissue-dependent enhancer essential for mouse embryogenesis. Molecular and cellular biology 2005; 25:3658-3669 (Pubitemid 40559572)
    • (2005) Molecular and Cellular Biology , vol.25 , Issue.9 , pp. 3658-3669
    • Kelly, V.P.1    Suzuki, T.2    Nakajima, O.3    Arai, T.4    Tamai, Y.5    Takahashi, S.6    Nishimura, S.7    Yamamoto, M.8
  • 18
    • 0024296378 scopus 로고
    • Effects of tRNA-intron structure on cleavage of precursor tRNAs by RNase P from Saccharomyces cerevisiae
    • Leontis N, DaLio A, Strobel M, Engelke D. Effects of tRNA-intron structure on cleavage of precursor tRNAs by RNase P from Saccharomyces cerevisiae. Nucleic Acids Res 1988; 16:2537-2552
    • (1988) Nucleic Acids Res , vol.16 , pp. 2537-2552
    • Leontis, N.1    DaLio, A.2    Strobel, M.3    Engelke, D.4
  • 20
    • 33751004155 scopus 로고    scopus 로고
    • The genetic code - Thawing the 'frozen accident'
    • Soll D, RajBhandary UL. The genetic code - thawing the 'frozen accident'. Journal of biosciences 2006; 31:459-463
    • (2006) Journal of Biosciences , vol.31 , pp. 459-463
    • Soll, D.1    RajBhandary, U.L.2
  • 21
    • 0028332057 scopus 로고
    • Transfer RNA mutation and the malleability of the genetic code
    • DOI 10.1006/jmbi.1994.1094
    • Schultz DW, Yarus M. Transfer RNA mutation and the malleability of the genetic code. J Mol Biol 1994; 235:1377-1380 (Pubitemid 24150392)
    • (1994) Journal of Molecular Biology , vol.235 , Issue.5 , pp. 1377-1380
    • Schultz, D.W.1    Yarus, M.2
  • 22
    • 2042479408 scopus 로고    scopus 로고
    • Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation
    • DOI 10.1016/S0092-8674(04)00342-3, PII S0092867404003423
    • Paushkin SV, Patel M, Furia BS, Peltz SW, Trotta CR. Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation. Cell 2004; 117:311-321 (Pubitemid 38534538)
    • (2004) Cell , vol.117 , Issue.3 , pp. 311-321
    • Paushkin, S.V.1    Patel, M.2    Furia, B.S.3    Peltz, S.W.4    Trotta, C.R.5
  • 25
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • DOI 10.1093/nar/gkg595
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003; 31:3406-3415 (Pubitemid 37442169)
    • (2003) Nucleic Acids Research , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 26
    • 33747814806 scopus 로고    scopus 로고
    • [14] Microarray Analysis of RNA Processing and Modification
    • DOI 10.1016/S0076-6879(06)10014-2, PII S0076687906100142
    • Hughes TR, Hiley SL, Saltzman AL, Babak T, Blencowe BJ. Microarray analysis of RNA processing and modification. Methods in enzymology 2006; 410:300-316 (Pubitemid 44287011)
    • (2006) Methods in Enzymology , vol.410 , pp. 300-316
    • Hughes, T.R.1    Hiley, S.L.2    Saltzman, A.L.3    Babak, T.4    Blencowe, B.J.5
  • 27
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 2002; 30:207-210
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 28
    • 0033385092 scopus 로고    scopus 로고
    • ULS: A versatile method of labeling nucleic acids for FISH based on a monofunctional reaction of cisplatin derivatives with guanine moieties
    • Wiegant JC, van Gijlswijk RP, Heetebrij RJ, Bezrookove V, Raap AK, Tanke HJ. ULS: a versatile method of labeling nucleic acids for FISH based on a monofunctional reaction of cisplatin derivatives with guanine moieties. Cytogenet Cell Genet 1999; 87:47-52. (Pubitemid 30021032)
    • (1999) Cytogenetics and Cell Genetics , vol.87 , Issue.1-2 , pp. 47-52
    • Wiegant, J.C.A.G.1    Van Gijlswijk, R.P.M.2    Heetebrij, R.J.3    Bezrookove, V.4    Raap, A.K.5    Tanke, H.J.6
  • 29
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W, von Heydebreck A, Sultmann H, Poustka A, Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics (Oxford, England) 2002; 18:96-104. (Pubitemid 41185642)
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Huber, W.1    Von Heydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.