Proteomic analysis of PBMCs: Characterization of potential HIV-associated proteins

Proteome Science

Volumn 8, Issue , 2010, Pages

  Zhang, Lijun ^a   Jia, Xiaofang ^a   Zhang, Xiaojun ^b   Sun, Jianjun ^a   Peng, Xia ^a   Qi, Tangkai ^a   Ma, Fang ^a   Yin, Lin ^a   Yao, Yamin ^a   Qiu, Chao ^c   Lu, Hongzhou ^a  

^a SHANGHAI PUBLIC HEALTH CLINICAL CENTER   (China)

^b FUZHOU GENERAL HOSPITAL   (China)

^c FUDAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

FILAMIN A; KHELLIN; MESSENGER RNA; TALIN; VINCULIN;

ADULT; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; DOWN REGULATION; FEMALE; GENE EXPRESSION; HOST CELL; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS INFECTED PATIENT; MALE; PERIPHERAL BLOOD MONONUCLEAR CELL; PROTEIN EXPRESSION; PROTEOMICS; REAL TIME POLYMERASE CHAIN REACTION; TWO DIMENSIONAL ELECTROPHORESIS; UPREGULATION; WESTERN BLOTTING;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 77958172943     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-8-12     Document Type: Article

References (50)

1. O'Brien ME, Clark RA, Besch CL, Myers L, Kissinger P. Patterns and correlates of discontinuation of the initial HAART regimen in an urban outpatient cohort. J Acquir Immune Defic Syndr 2003, 34:407-414. 10.1097/00126334-200312010-00008, 14615659.
2. Fellay J, Boubaker K, Ledergerber B, Bernasconi E, Furrer H, Battegay M, Hirschel B, Vernazza P, Francioli P, Greub G, Flepp M, Telenti A. Prevalence of adverse events associated with potent antiretroviral treatment: Swiss HIV Cohort Study. Lancet 2001, 358:1322-1327. 10.1016/S0140-6736(01)06413-3, 11684213.
3. Wollscheid B, Watts JD, Aebersold R. Proteomics/genomics and signaling in lymphocytes. Curr Opin Immunol 2004, 16:337-344. 10.1016/j.coi.2004.03.016, 15134783.
4. Spetz AL, Patterson BK, Lore K, Andersson J, Holmgren L. Functional gene transfer of HIV DNA by an HIV receptor-independent mechanism. J Immunol 1999, 163:736-742.
5. Chen Z, Cheng Y, Xu Y, Liao J, Zhang X, Hu Y, Zhang Q, Wang J, Zhang Z, Shen F, Yuan Z. Expression profiles and function of Toll-like receptors 2 and 4 in peripheral blood mononuclear cells of chronic hepatitis B patients. Clin Immunol 2008, 128:400-408. 10.1016/j.clim.2008.04.006, 18565796.
6. List EO, Berryman DE, Bower B, Sackmann-Sala L, Gosney E, Ding J, Okada S, Kopchick JJ. The use of proteomics to study infectious diseases. Infect Disord Drug Targets 2008, 8:31-45.
7. D'Andrea G, Brisdelli F, Bozzi A. AZT: an old drug with new perspectives. Curr Clin Pharmacol 2008, 3:20-37. 10.2174/157488408783329913, 18690875.
8. Rasheed S, Yan JS, Lau A, Chan AS. HIV replication enhances production of free fatty acids, low density lipoproteins and many key proteins involved in lipid metabolism: a proteomics study. PLoS ONE 2008, 3:e3003. 10.1371/journal.pone.0003003, 2500163, 18714345.
9. Ciborowski P, Enose Y, Mack A, Fladseth M, Gendelman HE. Diminished matrix metalloproteinase 9 secretion in human immunodeficiency virus-infected mononuclear phagocytes: modulation of innate immunity and implications for neurological disease. J Neuroimmunol 2004, 157:11-16. 10.1016/j.jneuroim.2004.08.033, 15579275.
10. Barrett L, Gallant M, Howley C, Bowmer MI, Hirsch G, Peltekian K, Grant M. Enhanced IL-10 production in response to hepatitis C virus proteins by peripheral blood mononuclear cells from human immunodeficiency virus-monoinfected individuals. BMC Immunol 2008, 9:28. 10.1186/1471-2172-9-28, 2443791, 18554409.
11. Calarota SA, Foli A, Maserati R, Baldanti F, Paolucci S, Young MA, Tsoukas CM, Lisziewicz J, Lori F. HIV-1-specific T cell precursors with high proliferative capacity correlate with low viremia and high CD4 counts in untreated individuals. J Immunol 2008, 180:5907-5915.
12. Minga AK, Anglaret X, d' Aquin Toni T, Chaix ML, Dohoun L, Abo Y, Coulibaly A, Duvignac J, Gabillard D, Rouet F, Rouzioux C. HIV-1 DNA in peripheral blood mononuclear cells is strongly associated with HIV-1 disease progression in recently infected West African adults. J Acquir Immune Defic Syndr 2008, 48:350-354.
13. Sternfeld T, Tischleder A, Schuster M, Bogner JR. Mitochondrial membrane potential and apoptosis of blood mononuclear cells in untreated HIV-1 infected patients. HIV Med 2009, 10:512-519. 10.1111/j.1468-1293.2009.00723.x, 19496834.
14. Gougeon ML, Lecoeur H, Dulioust A, Enouf MG, Crouvoiser M, Goujard C, Debord T, Montagnier L. Programmed cell death in peripheral lymphocytes from HIV-infected persons: increased susceptibility to apoptosis of CD4 and CD8 T cells correlates with lymphocyte activation and with disease progression. J Immunol 1996, 156:3509-3520.
15. Franceschi C, Franceschini MG, Boschini A, Trenti T, Nuzzo C, Castellani G, Smacchia C, De Rienzo B, Roncaglia R, Portolani M, Pietrosemoli P, Meacci M, Pecorari M, Sabbatini A, Malorni W, Cossarizza A. Phenotypic characteristics and tendency to apoptosis of peripheral blood mononuclear cells from HIV+ long term non progressors. Cell Death Differ 1997, 4:815-823. 10.1038/sj.cdd.4400305, 16465294.
16. Wang T, Gong N, Liu J, Kadiu I, Kraft-Terry SD, Mosley RL, Volsky DJ, Ciborowski P, Gendelman HE. Proteomic modeling for HIV-1 infected microglia-astrocyte crosstalk. PLoS ONE 2008, 3:e2507. 10.1371/journal.pone.0002507, 2429966, 18575609.
17. He F, Zeng Y, Wu X, Ji Y, He X, Andrus T, Zhu T, Wang T. Endogenous HIV-1 Vpr-mediated apoptosis and proteome alteration of human T-cell leukemia virus-1 transformed C8166 cells. Apoptosis 2009, 14:1212-1226. 10.1007/s10495-009-0380-4, 19655254.
18. Ringrose JH, Jeeninga RE, Berkhout B, Speijer D. Proteomic studies reveal coordinated changes in T-cell expression patterns upon infection with human immunodeficiency virus type 1. J Virol 2008, 82:4320-4330. 10.1128/JVI.01819-07, 2293043, 18287243.
19. Xiaobo H, Yong L, Daming J, Lei X, Ying S, Jinfeng Z. External quality assessment of automated hematology analyzer performance using fresh human blood samples in Shanghai. Lab Hematol 2003, 9:175-178.
20. Zhang L, Liu X, Zhang J, Cao R, Lin Y, Xie J, Chen P, Sun Y, Li D, Liang S. Proteome analysis of combined effects of androgen and estrogen on the mouse mammary gland. Proteomics 2006, 6:487-497. 10.1002/pmic.200402007, 16317779.
21. Gorg A, Postel W, Domscheit A, Gunther S. Two-dimensional electrophoresis with immobilized pH gradients of leaf proteins from barley (Hordeum vulgare): method, reproducibility and genetic aspects. Electrophoresis 1988, 9:681-692. 10.1002/elps.1150091103, 3250872.
22. Zhang L, Xie J, Wang X, Liu X, Tang X, Cao R, Hu W, Nie S, Fan C, Liang S. Proteomic analysis of mouse liver plasma membrane: use of differential extraction to enrich hydrophobic membrane proteins. Proteomics 2005, 5:4510-4524. 10.1002/pmic.200401318, 16222721.
23. Zhang L, Wang X, Peng X, Wei Y, Cao R, Liu Z, Xiong J, Ying X, Chen P, Liang S. Immunoaffinity purification of plasma membrane with secondary antibody superparamagnetic beads for proteomic analysis. J Proteome Res 2007, 6:34-43. 10.1021/pr060069r, 17203946.
24. Wiederin J, Rozek W, Duan F, Ciborowski P. Biomarkers of HIV-1 associated dementia: proteomic investigation of sera. Proteome Sci 2009, 7:8. 10.1186/1477-5956-7-8, 2666658, 19292902.
25. Pendyala G, Trauger SA, Kalisiak E, Ellis RJ, Siuzdak G, Fox HS. Cerebrospinal fluid proteomics reveals potential pathogenic changes in the brains of SIV-infected monkeys. J Proteome Res 2009, 8:2253-2260. 10.1021/pr800854t, 19281240.
26. Laspiur JP, Anderson ER, Ciborowski P, Wojna V, Rozek W, Duan F, Mayo R, Rodriguez E, Plaud-Valentin M, Rodriguez-Orengo J, Gendelman HE, Melendez LM. CSF proteomic fingerprints for HIV-associated cognitive impairment. J Neuroimmunol 2007, 192:157-170. 10.1016/j.jneuroim.2007.08.004, 2248223, 17950469.
27. Luciano-Montalvo C, Ciborowski P, Duan F, Gendelman HE, Melendez LM. Proteomic Analyses Associate Cystatin B with Restricted HIV-1 Replication in Placental Macrophages. Placenta 2008, 29:1016-1023. 10.1016/j.placenta.2008.09.005, 18951626.
28. Jolly C, Kashefi K, Hollinshead M, Sattentau QJ. HIV-1 cell to cell transfer across an Env-induced, actin-dependent synapse. J Exp Med 2004, 199:283-293. 10.1084/jem.20030648, 2211771, 14734528.
29. Koefoed K, Ditzel HJ. Identification of talin head domain as an immunodominant epitope of the antiplatelet antibody response in patients with HIV-1-associated thrombocytopenia. Blood 2004, 104:4054-4062. 10.1182/blood-2004-01-0386, 15315970.
30. Foger N, Rangell L, Danilenko DM, Chan AC. Requirement for coronin 1 in T lymphocyte trafficking and cellular homeostasis. Science 2006, 313:839-842. 10.1126/science.1130563, 16902139.
31. Lesay A, Hickman JA, Gibson RM. Disruption of focal adhesions mediates detachment during neuronal apoptosis. Neuroreport 2001, 12:2111-2115. 10.1097/00001756-200107200-00014, 11447317.
32. Izard T, Vonrhein C. Structural basis for amplifying vinculin activation by talin. J Biol Chem 2004, 279:27667-27678. 10.1074/jbc.M403076200, 15070891.
33. Izard T, Evans G, Borgon RA, Rush CL, Bricogne G, Bois PR. Vinculin activation by talin through helical bundle conversion. Nature 2004, 427:171-175. 10.1038/nature02281, 14702644.
34. Nhieu GT, Izard T. Vinculin binding in its closed conformation by a helix addition mechanism. Embo J 2007, 26:4588-4596. 10.1038/sj.emboj.7601863, 2063484, 17932491.
35. Quaranta MG, Mattioli B, Spadaro F, Straface E, Giordani L, Ramoni C, Malorni W, Viora M. HIV-1 Nef triggers Vav-mediated signaling pathway leading to functional and morphological differentiation of dendritic cells. Faseb J 2003, 17:2025-2036. 10.1096/fj.03-0272com, 14597672.
36. Propato A, Cutrona G, Francavilla V, Ulivi M, Schiaffella E, Landt O, Dunbar R, Cerundolo V, Ferrarini M, Barnaba V. Apoptotic cells overexpress vinculin and induce vinculin-specific cytotoxic T-cell cross-priming. Nat Med 2001, 7:807-813. 10.1038/89930, 11433345.
37. Jimenez-Baranda S, Gomez-Mouton C, Rojas A, Martinez-Prats L, Mira E, Ana Lacalle R, Valencia A, Dimitrov DS, Viola A, Delgado R, Martinez AC, Manes S. Filamin-A regulates actin-dependent clustering of HIV receptors. Nat Cell Biol 2007, 9:838-846. 10.1038/ncb1610, 17572668.
38. Umeda T, Kouchi Z, Kawahara H, Tomioka S, Sasagawa N, Maeda T, Sorimachi H, Ishiura S, Suzuki K. Limited proteolysis of filamin is catalyzed by caspase-3 in U937 and Jurkat cells. J Biochem 2001, 130:535-542.
39. Tandon R, Levental I, Huang C, Byfield FJ, Ziembicki J, Schelling JR, Bruggeman LA, Sedor JR, Janmey PA, Miller RT. HIV infection changes glomerular podocyte cytoskeletal composition and results in distinct cellular mechanical properties. Am J Physiol Renal Physiol 2007, 292:F701-710. 10.1152/ajprenal.00246.2006, 17047167.
40. Boutet A, Altmeyer R, Hery C, Tardieu M. Direct role of plasma membrane-expressed gp120/41 in toxicity to human astrocytes induced by HIV-1-infected macrophages. Aids 2000, 14:2687-2697. 10.1097/00002030-200012010-00008, 11125887.
41. Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127:635-648. 10.1016/j.cell.2006.09.026, 17081983.
42. Wang T, Gong N, Liu J, Kadiu I, Kraft-Terry SD, Schlautman JD, Ciborowski P, Volsky DJ, Gendelman HE. HIV-1-infected astrocytes and the microglial proteome. J Neuroimmune Pharmacol 2008, 3:173-186. 10.1007/s11481-008-9110-x, 2579774, 18587649.
43. Gupta N, Shankernarayan NP, Dharmalingam K. Serum proteome of leprosy patients undergoing erythema nodosum leprosum reaction: regulation of expression of the isoforms of haptoglobin. J Proteome Res 2007, 6:3669-3679. 10.1021/pr070223p, 17658739.
44. Wood TC, Aksoy IA, Aksoy S, Weinshilboum RM. Human liver thermolabile phenol sulfotransferase: cDNA cloning, expression and characterization. Biochem Biophys Res Commun 1994, 198:1119-1127. 10.1006/bbrc.1994.1159, 8117269.
45. Lorenz MW, Stephan C, Harmjanz A, Staszewski S, Buehler A, Bickel M, von Kegler S, Ruhkamp D, Steinmetz H, Sitzer M. Both long-term HIV infection and highly active antiretroviral therapy are independent risk factors for early carotid atherosclerosis. Atherosclerosis 2008, 196:720-726. 10.1016/j.atherosclerosis.2006.12.022, 17275008.
46. Niu J, Profirovic J, Pan H, Vaiskunaite R, Voyno-Yasenetskaya T. G Protein betagamma subunits stimulate p114RhoGEF, a guanine nucleotide exchange factor for RhoA and Rac1: regulation of cell shape and reactive oxygen species production. Circ Res 2003, 93:848-856. 10.1161/01.RES.0000097607.14733.0C, 14512443.
47. Vazquez N, Greenwell-Wild T, Marinos NJ, Swaim WD, Nares S, Ott DE, Schubert U, Henklein P, Orenstein JM, Sporn MB, Wahl SM. Human immunodeficiency virus type 1-induced macrophage gene expression includes the p21 gene, a target for viral regulation. J Virol 2005, 79:4479-4491. 10.1128/JVI.79.7.4479-4491.2005, 1061522, 15767448.
48. Wahl SM, Greenwell-Wild T, Peng G, Ma G, Orenstein JM, Vazquez N. Viral and host cofactors facilitate HIV-1 replication in macrophages. J Leukoc Biol 2003, 74:726-735. 10.1189/jlb.0503220, 12960226.
49. Olsen KE, Sletten K, Westermark P. Extended analysis of AL-amyloid protein from abdominal wall subcutaneous fat biopsy: kappa IV immunoglobulin light chain. Biochem Biophys Res Commun 1998, 245:713-716. 10.1006/bbrc.1998.8515, 9588180.
50. Shoeman RL, Hartig R, Hauses C, Traub P. Organization of focal adhesion plaques is disrupted by action of the HIV-1 protease. Cell Biol Int 2002, 26:529-539. 10.1006/cbir.2002.0895, 12119179.