Adaptive changes of the yeast mitochondrial proteome in response to salt stress

OMICS A Journal of Integrative Biology

Volumn 14, Issue 5, 2010, Pages 541-552

  Martínez Pastor, Mar ^a   Proft, Markus ^a   Pascual Ahuir, Amparo ^a  

^a Ciudad Politécnica de la Innovación   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ALDEHYDE DEHYDROGENASE; COQ6 ENZYME; COQ7 ENZYME; DELTA(24) STEROL C METHYLTRANSFERASE; FRUCTOSE BISPHOSPHATE ALDOLASE; FUNGAL PROTEIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE ISOZYME 1; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE ISOZYME 2; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE ISOZYME 3; HEAT SHOCK PROTEIN 78; HYDROGEN PEROXIDE; MITOCHONDRIAL PROTEIN; PEROXIREDOXIN; PHOSPHOGLYCERATE KINASE; PROTEIN ATP4; PROTEIN CPR5; PROTEIN ECM40; PROTEIN GCV3; PROTEIN ILV2; PROTEIN ILV6; PROTEIN KAR2; PROTEIN LEU4; PROTEIN LEU9; PROTEIN LSP1; PROTEIN PDI1; PROTEIN RIP1; PYRUVATE DECARBOXYLASE ISOZYME 1; SODIUM CHLORIDE; SUPEROXIDE DISMUTASE; UNCLASSIFIED DRUG;

AMINO ACID SYNTHESIS; ARTICLE; DOWN REGULATION; FUNGUS GROWTH; MITOCHONDRIAL MEMBRANE; MITOCHONDRION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SALT STRESS; UPREGULATION;

ADAPTATION, PHYSIOLOGICAL; AMINO ACIDS; ANIMALS; MITOCHONDRIA; OXIDATIVE STRESS; PROTEOME; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SODIUM CHLORIDE;

SACCHAROMYCES CEREVISIAE;

EID: 77958155905     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2010.0020     Document Type: Article

References (58)

1. Achleitner, G., Gaigg, B., Krasser, A., Kainersdorfer, E., Kohlwein, S. D., Perktold, A., et al. (1999). Association between the endoplasmic reticulum and mitochondria of yeast facilitates interorganelle transport of phospholipids through membrane contact. Eur J Biochem 264, 545-553.
2. Aponte, A. M., Phillips, D., Hopper, R. K., Johnson, D. T., Harris, R. A., Blinova, K., et al. (2009). Use of (32) P to study dynamics of the mitochondrial phosphoproteome. J Proteome Res 8, 2679-2695.
3. Balaban, R. S., Nemoto, S., and Finkel, T. (2005). Mitochondria, oxidants, and aging. Cell 120, 483-495.
4. Bentinger, M., Brismar, K., and Dallner, G. (2007). The antioxidant role of coenzyme Q. Mitochondrion 7 (Suppl), S41-S50.
5. Carlson, M. (1999). Glucose repression in yeast. Curr Opin Microbiol 2, 202-207.
6. Chan, D. C. (2006). Mitochondria: dynamic organelles in disease, aging, and development. Cell 125, 1241-1252.
7. Chen, X. J., and Butow, R. A. (2005). The organization and inheritance of the mitochondrial genome. Nat Rev Genet 6, 815-825.
8. Csordas, G., Renken, C., Varnai, P., Walter, L., Weaver, D., Buttle, K. F., et al. (2006). Structural and functional features and significance of the physical linkage between ER and mitochondria. J Cell Biol 174, 915-921.
9. Detmer, S. A., and Chan, D. C. (2007). Functions and dysfunctions of mitochondrial dynamics. Nat Rev Mol Cell Biol 8, 870-879.
10. Dieckmann, C. L., and Staples, R. R. (1994). Regulation of mitochondrial gene expression in Saccharomyces cerevisiae. Int Rev Cytol 152, 145-181.
11. Gaber, R. F., Copple, D. M., Kennedy, B. K., Vidal, M., and Bard, M. (1989). The yeast gene ERG6 is required for normal membrane function but is not essential for biosynthesis of the cell-cycle-sparking sterol. Mol Cell Biol 9, 3447-3456.
12. Gaigg, B., Simbeni, R., Hrastnik, C., Paltauf, F., and Daum, G. (1995). Characterization of a microsomal subfraction associated with mitochondria of the yeast, Saccharomyces cerevisiae. Involvement in synthesis and import of phospholipids into mitochondria. Biochim Biophys Acta 1234, 214-220.
13. Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., et al. (2000). Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11, 4241-4257.
14. Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., et al. (2003). Global analysis of protein expression in yeast. Nature 425, 737-741.
15. Gibson, G. E., Starkov, A., Blass, J. P., Ratan, R. R., and Beal, M. F. (2010). Cause and consequence: mitochondrial dysfunction initiates and propagates neuronal dysfunction, neuronal death and behavioral abnormalities in age-associated neurodegenerative diseases. Biochim Biophys Acta 1802, 122-134.
16. Giorgi, C., De Stefani, D., Bononi, A., Rizzuto, R., and Pinton, P. (2009). Structural and functional link between the mitochondrial network and the endoplasmic reticulum. Int J Biochem Cell Biol 41, 1817-1827.
17. Grant, C. M., Maciver, F. H., and Dawes, I. W. (1997). Mitochondrial function is required for resistance to oxidative stress in the yeast Saccharomyces cerevisiae. FEBS Lett 410, 219-222.
18. Greetham, D., and Grant, C. M. (2009). Antioxidant activity of the yeast mitochondrial one-Cys peroxiredoxin is dependent on thioredoxin reductase and glutathione in vivo. Mol Cell Biol 29, 3229-3240.
19. Grossmann, G., Malinsky, J., Stahlschmidt, W., Loibl, M., Weig-Meckl, I., Frommer, W. B., et al. (2008). Plasma membrane microdomains regulate turnover of transport proteins in yeast. J Cell Biol 183, 1075-1088.
20. Hayashi, T., Rizzuto, R., Hajnoczky, G., and Su, T. P. (2009). MAM: more than just a housekeeper. Trends Cell Biol 19, 81-88.
21. Hohmann, S. (2002). Osmotic adaptation in yeast-control of the yeast osmolyte system. Int Rev Cytol 215, 149-187.
22. Hong, H. Y., Yoo, G. S., and Choi, J. K. (2000). Direct Blue 71 staining of proteins bound to blotting membranes. Electrophoresis 21, 841-845.
23. Ito, J., Taylor, N. L., Castleden, I., Weckwerth, W., Millar, A. H., and Heazlewood, J. L. (2009). A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9, 4229-4240.
24. Kaasik, A., Safiulina, D., Zharkovsky, A., and Veksler, V. (2007). Regulation of mitochondrial matrix volume. Am J Physiol Cell Physiol 292, C157-C163.
25. Kornmann, B., Currie, E., Collins, S. R., Schuldiner, M., Nunnari, J., Weissman, J. S., et al. (2009). An ER-mitochondria tethering complex revealed by a synthetic biology screen. Science 325, 477-481.
26. Koziol, S., Zagulski, M., Bilinski, T., and Bartosz, G. (2005). Antioxidants protect the yeast Saccharomyces cerevisiae against hypertonic stress. Free Radic Res 39, 365-371.
27. Kucej, M., Kucejova, B., Subramanian, R., Chen, X. J., and Butow, R. A. (2008). Mitochondrial nucleoids undergo remodeling in response to metabolic cues. J Cell Sci 121, 1861-1868.
28. Lamb, D. C., Kelly, D. E., Manning, N. J., Kaderbhai, M. A., and Kelly, S. L. (1999). Biodiversity of the P450 catalytic cycle: yeast cytochrome b5/NADH cytochrome b5 reductase complex efficiently drives the entire sterol 14-demethylation (CYP51) reaction. FEBS Lett 462, 283-288.
29. Leonhardt, S. A., Fearson, K., Danese, P. N., and Mason, T. L. (1993). HSP78 encodes a yeast mitochondrial heat shock protein in the Clp family of ATP-dependent proteases. Mol Cell Biol 13, 6304-6313.
30. Liu, Z., and Butow, R. A. (2006). Mitochondrial retrograde signaling. Annu Rev Genet 40, 159-185.
31. McAlister, L., and Holland, M. J. (1985). Differential expression of the three yeast glyceraldehyde-3-phosphate dehydrogenase genes. J Biol Chem 260, 15019-15027.
32. McBride, H. M., Neuspiel, M., and Wasiak, S. (2006). Mitochondria: more than just a powerhouse. Curr Biol 16, R551-R560.
33. Meisinger, C., Sommer, T., and Pfanner, N. (2000). Purification of Saccharomcyes cerevisiae mitochondria devoid of microsomal and cytosolic contaminations. Anal Biochem 287, 339-342.
34. Miyagi, H., Kawai, S., and Murata, K. (2009). Two sources of mitochondrial NADPH in the yeast Saccharomyces cerevisiae. J Biol Chem 284, 7553-7560.
35. Murphy, M. P. (2009). How mitochondria produce reactive oxygen species. Biochem J 417, 1-13.
36. Nagarajan, L., and Storms, R. K. (1997). Molecular characterization of GCV3, the Saccharomyces cerevisiae gene coding for the glycine cleavage system hydrogen carrier protein. J Biol Chem 272, 4444-4450.
37. Ni, L., Bruce, C., Hart, C., Leigh-Bell, J., Gelperin, D., Umansky, L., et al. (2009). Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 23, 1351-1363.
38. Norbeck, J., and Blomberg, A. (1998). Amino acid uptake is strongly affected during exponential growth of Saccharomyces cerevisiae in 0.7M NaCl medium. FEMS Microbiol Lett 158, 121-126.
39. Nowikovsky, K., Schweyen, R. J., and Bernardi, P. (2009). Pathophysiology of mitochondrial volume homeostasis: potassium transport and permeability transition. Biochim Biophys Acta 1787, 345-350.
40. Pandey, G., Yoshikawa, K., Hirasawa, T., Nagahisa, K., Katakura, Y., Furusawa, C., et al. (2007). Extracting the hidden features in saline osmotic tolerance in Saccharomyces cerevisiae from DNA microarray data using the self-organizing map: biosynthesis of amino acids. Appl Microbiol Biotechnol 75, 415-426.
41. Pascual-Ahuir, A., Serrano, R., and Proft, M. (2001). The Sko1p repressor and Gcn4p activator antagonistically modulate stress-regulated transcription in Saccharomyces cerevisiae. Mol Cell Biol 21, 16-25.
42. Pastor, M. M., Proft, M., and Pascual-Ahuir, A. (2009). Mitochondrial function is an inducible determinant of osmotic stress adaptation in yeast. J Biol Chem 284, 30307-30317.
43. Pedrajas, J. R., Miranda-Vizuete, A., Javanmardy, N., Gustafsson, J. A., and Spyrou, G. (2000). Mitochondria of Saccharomyces cerevisiae contain one-conserved cysteine type peroxiredoxin with thioredoxin peroxidase activity. J Biol Chem 275, 16296-16301.
44. Perrone, G. G., Tan, S. X., and Dawes, I. W. (2008). Reactive oxygen species and yeast apoptosis. Biochim Biophys Acta 1783, 1354-1368.
45. Pizzo, P., and Pozzan, T. (2007). Mitochondria-endoplasmic reticulum choreography: structure and signaling dynamics. Trends Cell Biol 17, 511-517.
46. Posas, F., Chambers, J. R., Heyman, J. A., Hoeffler, J. P., De Nadal, E., and Arino, J. (2000). The transcriptional response of yeast to saline stress. J Biol Chem 275, 17249-17255.
47. Reinders, J., Zahedi, R. P., Pfanner, N., Meisinger, C., and Sickmann, A. (2006). Toward the complete yeast mitochondrial proteome: multidimensional separation techniques for mitochondrial proteomics. J Proteome Res 5, 1543-1554.
48. Reinders, J., Wagner, K., Zahedi, R. P., Stojanovski, D., Eyrich, B., van der Laan, M., et al. (2007). Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase. Mol Cell Proteomics 6, 1896-1906.
49. Rep, M., Krantz, M., Thevelein, J. M., and Hohmann, S. (2000). The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathwaydependent genes. J Biol Chem 275, 8290-8300.
50. Schmitt, M., Neupert, W., and Langer, T. (1995). Hsp78, a Clp homologue within mitochondria, can substitute for chaperone functions of mt-hsp70. EMBO J 14, 3434-3444.
51. Schuller, H. J. (2003). Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae. Curr Genet 43, 139-160.
52. Sedensky, M. M., and Morgan, P. G. (2006). Mitochondrial respiration and reactive oxygen species in mitochondrial aging mutants. Exp Gerontol 41, 237-245.
53. Steinman, H. M. (1980). The amino acid sequence of copper-zinc superoxide dismutase from bakers' yeast. J Biol Chem 255, 6758-6765.
54. Thorpe, G. W., Fong, C. S., Alic, N., Higgins, V. J., and Dawes, I. W. (2004). Cells have distinct mechanisms to maintain protection against different reactive oxygen species: oxidativestress-response genes. Proc Natl Acad Sci USA 101, 6564-6569.
55. Tran, U. C., and Clarke, C. F. (2007). Endogenous synthesis of coenzyme Q in eukaryotes. Mitochondrion 7 (Suppl), S62-S71.
56. Walther, T. C., Brickner, J. H., Aguilar, P. S., Bernales, S., Pantoja, C., and Walter, P. (2006). Eisosomes mark static sites of endocytosis. Nature 439, 998-1003.
57. Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., et al. (1999). Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285, 901-906.
58. Zahedi, R. P., Sickmann, A., Boehm, A. M., Winkler, C., Zufall, N., Schonfisch, B., et al. (2006). Proteomic analysis of the yeast mitochondrial outer membrane reveals accumulation of a subclass of preproteins. Mol Biol Cell 17, 1436-1450.