메뉴 건너뛰기




Volumn 10, Issue 1, 2010, Pages

Complex phylogenetic distribution of a non-canonical genetic code in green algae

Author keywords

[No Author keywords available]

Indexed keywords

CANONICAL ANALYSIS; CILIATE; EMERGENCE; EVOLUTIONARY BIOLOGY; GENETIC ANALYSIS; GREEN ALGA; PHYLOGENETICS; PHYLOGENY; POPULATION DISTRIBUTION; TAXONOMY;

EID: 77958143058     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-10-327     Document Type: Article
Times cited : (31)

References (48)
  • 1
    • 0013791281 scopus 로고
    • Order in the genetic code
    • 10.1073/pnas.54.1.71. 5216368
    • Order in the genetic code. CR Woese, Proc Natl Acad Sci USA 1965 54 1 71 75 10.1073/pnas.54.1.71 5216368
    • (1965) Proc Natl Acad Sci USA , vol.54 , Issue.1 , pp. 71-75
    • Woese, C.R.1
  • 2
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • 10.1016/0022-2836(68)90392-6. 4887876
    • The origin of the genetic code. FHC Crick, J Mol Biol 1968 38 3 367 379 10.1016/0022-2836(68)90392-6 4887876
    • (1968) J Mol Biol , vol.38 , Issue.3 , pp. 367-379
    • Crick, F.H.C.1
  • 4
    • 0035234558 scopus 로고    scopus 로고
    • Rewiring the keyboard: Evolvability of the genetic code
    • 10.1038/35047500. 11253070
    • Rewiring the keyboard: Evolvability of the genetic code. RD Knight SJ Freeland LF Landweber, Nat Rev Genet 2001 2 1 49 58 10.1038/35047500 11253070
    • (2001) Nat Rev Genet , vol.2 , Issue.1 , pp. 49-58
    • Knight, R.D.1    Freeland, S.J.2    Landweber, L.F.3
  • 5
    • 1642513699 scopus 로고    scopus 로고
    • Driving change: The evolution of alternative genetic codes
    • 10.1016/j.tig.2003.12.009. 14746991
    • Driving change: the evolution of alternative genetic codes. MAS Santos G Moura SE Massey MF Tuite, Trends Genet 2004 20 2 95 102 10.1016/j.tig.2003.12. 009 14746991
    • (2004) Trends Genet , vol.20 , Issue.2 , pp. 95-102
    • Santos, M.A.S.1    Moura, G.2    Massey, S.E.3    Tuite, M.F.4
  • 7
    • 34250704167 scopus 로고    scopus 로고
    • The mechanisms of codon reassignments in mitochondrial genetic codes
    • 10.1007/s00239-006-0284-7. 17541678
    • The mechanisms of codon reassignments in mitochondrial genetic codes. S Sengupta XG Yang PG Higgs, J Mol Evol 2007 64 6 662 688 10.1007/s00239-006-0284- 7 17541678
    • (2007) J Mol Evol , vol.64 , Issue.6 , pp. 662-688
    • Sengupta, S.1    Yang, X.G.2    Higgs, P.G.3
  • 8
    • 0024583607 scopus 로고
    • Codon reassignment (codon capture) in evolution
    • 10.1007/BF02103422. 2499683
    • Codon reassignment (codon capture) in evolution. S Osawa TH Jukes, J Mol Evol 1989 28 271 278 10.1007/BF02103422 2499683
    • (1989) J Mol Evol , vol.28 , pp. 271-278
    • Osawa, S.1    Jukes, T.H.2
  • 9
    • 0028332057 scopus 로고
    • Transfer RNA mutation and the malleability of the genetic code
    • 10.1006/jmbi.1994.1094. 8107079
    • Transfer RNA mutation and the malleability of the genetic code. DW Schultz M Yarus, J Mol Biol 1994 235 5 1377 1380 10.1006/jmbi.1994.1094 8107079
    • (1994) J Mol Biol , vol.235 , Issue.5 , pp. 1377-1380
    • Schultz, D.W.1    Yarus, M.2
  • 10
    • 22144437754 scopus 로고    scopus 로고
    • A unified model of codon reassignment in alternative genetic codes
    • 10.1534/genetics.104.037887. 15781705
    • A unified model of codon reassignment in alternative genetic codes. S Sengupta PG Higgs, Genetics 2005 170 2 831 840 10.1534/genetics.104.037887 15781705
    • (2005) Genetics , vol.170 , Issue.2 , pp. 831-840
    • Sengupta, S.1    Higgs, P.G.2
  • 11
    • 63449132404 scopus 로고    scopus 로고
    • Origin and Evolution of the Genetic Code: The Universal Enigma
    • 10.1002/iub.146. 19117371
    • Origin and Evolution of the Genetic Code: The Universal Enigma. EV Koonin AS Novozhilov, IUBMB Life 2009 61 2 99 111 10.1002/iub.146 19117371
    • (2009) IUBMB Life , vol.61 , Issue.2 , pp. 99-111
    • Koonin, E.V.1    Novozhilov, A.S.2
  • 12
    • 0242417617 scopus 로고    scopus 로고
    • Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp
    • 10.1101/gr.811003. 12670996
    • Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp. SE Massey G Moura P Beltrao R Almeida JR Garey MF Tuite MAS Santos, Genome Res 2003 13 544 557 10.1101/gr.811003 12670996
    • (2003) Genome Res , vol.13 , pp. 544-557
    • Massey, S.E.1    Moura, G.2    Beltrao, P.3    Almeida, R.4    Garey, J.R.5    Tuite, M.F.6    Santos, M.A.S.7
  • 14
    • 0029879951 scopus 로고    scopus 로고
    • A non-canonical genetic code in an early diverging eukaryotic lineage
    • 8641293
    • A non-canonical genetic code in an early diverging eukaryotic lineage. PJ Keeling WF Doolittle, EMBO Journal 1996 15 9 2285 2290 8641293
    • (1996) EMBO Journal , vol.15 , Issue.9 , pp. 2285-2290
    • Keeling, P.J.1    Doolittle, W.F.2
  • 15
    • 0021833489 scopus 로고
    • An unusual genetic code in nuclear genes of Tetrahymena
    • 10.1073/pnas.82.8.2452. 3921962
    • An unusual genetic code in nuclear genes of Tetrahymena. S Horowitz MA Gorovsky, Proc Natl Acad Sci USA 1985 82 8 2452 2455 10.1073/pnas.82.8.2452 3921962
    • (1985) Proc Natl Acad Sci USA , vol.82 , Issue.8 , pp. 2452-2455
    • Horowitz, S.1    Gorovsky, M.A.2
  • 16
    • 0000760492 scopus 로고
    • Dramatic events in ciliate evolution - Alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs-Gln
    • 16453685
    • Dramatic events in ciliate evolution - alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs-Gln. N Hanyu Y Kuchino S Nishimura H Beier, EMBO Journal 1986 5 6 1307 1311 16453685
    • (1986) EMBO Journal , vol.5 , Issue.6 , pp. 1307-1311
    • Hanyu, N.1    Kuchino, Y.2    Nishimura, S.3    Beier, H.4
  • 17
    • 0037424615 scopus 로고    scopus 로고
    • Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix
    • 10.1016/S0022-2836(03)00057-3. 12595248
    • Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix. PJ Keeling BS Leander, J Mol Biol 2003 326 5 1337 1349 10.1016/S0022-2836(03)00057-3 12595248
    • (2003) J Mol Biol , vol.326 , Issue.5 , pp. 1337-1349
    • Keeling, P.J.1    Leander, B.S.2
  • 18
    • 38149066642 scopus 로고    scopus 로고
    • Environmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads
    • 18211267
    • Environmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads. AP de Koning GP Noble AA Heiss J Wong PJ Keeling, Environ Microbiol 2008 10 1 65 74 18211267
    • (2008) Environ Microbiol , vol.10 , Issue.1 , pp. 65-74
    • De Koning, A.P.1    Noble, G.P.2    Heiss, A.A.3    Wong, J.4    Keeling, P.J.5
  • 19
    • 0025923213 scopus 로고
    • Sequences of two rbcS cDNA clones of Batophora oerstedii: Structural and evolutionary considerations
    • 10.1007/BF00312782. 1934113
    • Sequences of two rbcS cDNA clones of Batophora oerstedii: structural and evolutionary considerations. SU Schneider EJ de Groot, Curr Genet 1991 20 1-2 173 175 10.1007/BF00312782 1934113
    • (1991) Curr Genet , vol.20 , Issue.1-2 , pp. 173-175
    • Schneider, S.U.1    De Groot, E.J.2
  • 20
    • 0024721315 scopus 로고
    • Strong homology between the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase of two species of Acetabularia and the occurrence of unusual codon usage
    • 10.1007/BF00332408. 2573818
    • Strong homology between the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase of two species of Acetabularia and the occurrence of unusual codon usage. SU Schneider MB Leible XP Yang, Mol Gen Genet 1989 218 3 445 452 10.1007/BF00332408 2573818
    • (1989) Mol Gen Genet , vol.218 , Issue.3 , pp. 445-452
    • Schneider, S.U.1    Leible, M.B.2    Yang, X.P.3
  • 21
    • 67651176182 scopus 로고    scopus 로고
    • The distribution of elongation factor-1alpha (EF-1), elongation factor-like (EFL), and a non-canonical genetic code in the Ulvophyceae: Discrete genetic characters support a consistent phylogenetic framework
    • 10.1111/j.1550-7408.2009.00411.x. 19602082
    • The distribution of elongation factor-1alpha (EF-1), elongation factor-like (EFL), and a non-canonical genetic code in the Ulvophyceae: discrete genetic characters support a consistent phylogenetic framework. GH Gile P Novis D Cragg GC Zuccarello PJ Keeling, J Eukaryot Microbiol 2009 56 4 367 372 10.1111/j.1550-7408.2009.00411.x 19602082
    • (2009) J Eukaryot Microbiol , vol.56 , Issue.4 , pp. 367-372
    • Gile, G.H.1    Novis, P.2    Cragg, D.3    Zuccarello, G.C.4    Keeling, P.J.5
  • 22
    • 77955954582 scopus 로고    scopus 로고
    • Evolution and cytological diversification of the green seaweeds (Ulvophyceae). Molecular Biology and Evolution
    • 10.1093/molbev/msq091
    • Evolution and cytological diversification of the green seaweeds (Ulvophyceae). Molecular Biology and Evolution. E Cocquyt H Verbruggen F Leliaert O De Clerck, Mol Biol Evol 2010 9 2052 2061 10.1093/molbev/msq091
    • (2010) Mol Biol Evol , vol.9 , pp. 2052-2061
    • Cocquyt, E.1    Verbruggen, H.2    Leliaert, F.3    De Clerck, O.4
  • 24
    • 84986779681 scopus 로고
    • Phylogeny of the Ulvophyceae (Chlorophyta): Cladistic analysis of nuclear-encoded rRNA sequence data
    • 10.1111/j.0022-3646.1990.00700.x
    • Phylogeny of the Ulvophyceae (Chlorophyta): cladistic analysis of nuclear-encoded rRNA sequence data. FW Zechman EC Theriot EA Zimmer RL Chapman, J Phycol 1990 26 4 700 710 10.1111/j.0022-3646.1990.00700.x
    • (1990) J Phycol , vol.26 , Issue.4 , pp. 700-710
    • Zechman, F.W.1    Theriot, E.C.2    Zimmer, E.A.3    Chapman, R.L.4
  • 25
    • 0344896842 scopus 로고    scopus 로고
    • Phylogenetic affinities of the Trentepohliales inferred from small-subunit rDNA
    • 10.1099/ijs.0.02256-0. 14657153
    • Phylogenetic affinities of the Trentepohliales inferred from small-subunit rDNA. JM Lápez-Bautista RL Chapman, Int J Syst Evol Microbiol 2003 53 2099 2106 10.1099/ijs.0.02256-0 14657153
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 2099-2106
    • Lápez-Bautista, J.M.1    Chapman, R.L.2
  • 26
    • 33846930816 scopus 로고    scopus 로고
    • Ultrastructure and phylogenetic relationships of the unicellular green algae Ignatius tetrasporus and Pseudocharacium americanum (Chlorophyta)
    • DOI 10.1111/j.1440-1835.2006.00439.x
    • Ultrastructure and phylogenetic relationships of the unicellular green algae Ignatius tetrasporus and Pseudocharacium americanum (Chlorophyta). S Watanabe T Nakayama, Phycol Res 2007 55 1 1 16 10.1111/j.1440-1835.2006.00439.x (Pubitemid 46233675)
    • (2007) Phycological Research , vol.55 , Issue.1 , pp. 1-16
    • Watanabe, S.1    Nakayama, T.2
  • 27
    • 0033413220 scopus 로고    scopus 로고
    • Estimation of ancestral states of continuous characters: A computer simulation study
    • 10.1080/106351599260210
    • Estimation of ancestral states of continuous characters: A computer simulation study. EP Martins, Syst Biol 1999 48 3 642 650 10.1080/ 106351599260210
    • (1999) Syst Biol , vol.48 , Issue.3 , pp. 642-650
    • Martins, E.P.1
  • 28
    • 33646737852 scopus 로고    scopus 로고
    • Parallel evolution of the genetic code in arthropod mitochondrial genomes
    • 10.1371/journal.pbio.0040127. 16620150
    • Parallel evolution of the genetic code in arthropod mitochondrial genomes. F Abascal D Posada RD Knight R Zardoya, Plos Biol 2006 4 5 127 10.1371/journal.pbio.0040127 16620150
    • (2006) Plos Biol , vol.4 , Issue.5 , pp. 5127
    • Abascal, F.1    Posada, D.2    Knight, R.D.3    Zardoya, R.4
  • 29
    • 76749121381 scopus 로고    scopus 로고
    • Certain non-standard coding tables appear to be more robusr to error than the standard genetic code
    • 10.1007/s00239-009-9303-9. 20012032
    • Certain non-standard coding tables appear to be more robusr to error than the standard genetic code. ML Kurnaz T Bilgin IA Kurnaz, J Mol Evol 2010 70 13 38 10.1007/s00239-009-9303-9 20012032
    • (2010) J Mol Evol , vol.70 , pp. 13-38
    • Kurnaz, M.L.1    Bilgin, T.2    Kurnaz, I.A.3
  • 30
    • 0029069222 scopus 로고
    • Genetic code deviations in the ciliates: Evidence for multiple and independent events
    • 7621837
    • Genetic code deviations in the ciliates: evidence for multiple and independent events. A Baroin Tourancheau N Tsao LA Klobutcher RE Pearlman A Adoutte, EMBO Journal 1995 14 13 3262 3267 7621837
    • (1995) EMBO Journal , vol.14 , Issue.13 , pp. 3262-3267
    • Baroin Tourancheau, A.1    Tsao, N.2    Klobutcher, L.A.3    Pearlman, R.E.4    Adoutte, A.5
  • 31
    • 0035936577 scopus 로고    scopus 로고
    • The molecular basis of nuclear genetic code change in ciliates
    • 10.1016/S0960-9822(01)00028-8. 11231122
    • The molecular basis of nuclear genetic code change in ciliates. CA Lozupone RD Knight LF Landweber, Curr Biol 2001 11 2 65 74 10.1016/S0960- 9822(01)00028-8 11231122
    • (2001) Curr Biol , vol.11 , Issue.2 , pp. 65-74
    • Lozupone, C.A.1    Knight, R.D.2    Landweber, L.F.3
  • 32
    • 0037418581 scopus 로고    scopus 로고
    • A new noncanonical nuclear genetic code: Translation of UAA into glutamate
    • 10.1016/S0960-9822(03)00126-X. 12620196
    • A new noncanonical nuclear genetic code: Translation of UAA into glutamate. R Snchez-Silva E Villalobo L Morin A Torres, Curr Biol 2003 13 5 442 447 10.1016/S0960-9822(03)00126-X 12620196
    • (2003) Curr Biol , vol.13 , Issue.5 , pp. 442-447
    • Snchez-Silva, R.1    Villalobo, E.2    Morin, L.3    Torres, A.4
  • 33
    • 0035581083 scopus 로고    scopus 로고
    • Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs
    • 10.1093/nar/29.23.4767. 11726686
    • Misreading of termination codons in eukaryotes by natural nonsense suppressor tRNAs. H Beier M Grimm, Nucleic Acids Res 2001 29 23 4767 4782 10.1093/nar/29.23.4767 11726686
    • (2001) Nucleic Acids Res , vol.29 , Issue.23 , pp. 4767-4782
    • Beier, H.1    Grimm, M.2
  • 34
    • 0037079664 scopus 로고    scopus 로고
    • Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: The evolution of stop codon specificity
    • 10.1093/nar/30.2.532. 11788716
    • Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity. Y Inagaki C Blouin WF Doolittle AJ Roger, Nucleic Acids Res 2002 30 2 532 544 10.1093/nar/30.2.532 11788716
    • (2002) Nucleic Acids Res , vol.30 , Issue.2 , pp. 532-544
    • Inagaki, Y.1    Blouin, C.2    Doolittle, W.F.3    Roger, A.J.4
  • 35
    • 2342456308 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: Terminating erroneous gene expression
    • 10.1016/j.ceb.2004.03.003. 15145354
    • Nonsense-mediated mRNA decay: terminating erroneous gene expression. KE Baker R Parker, Curr Opin Cell Biol 2004 16 3 293 299 10.1016/j.ceb.2004.03.003 15145354
    • (2004) Curr Opin Cell Biol , vol.16 , Issue.3 , pp. 293-299
    • Baker, K.E.1    Parker, R.2
  • 36
    • 0742323558 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics
    • DOI 10.1038/nrm1310
    • Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics. LE Maquat, Nat Rev Mol Cell Bio 2004 5 2 89 99 10.1038/nrm1310 (Pubitemid 38160252)
    • (2004) Nature Reviews Molecular Cell Biology , vol.5 , Issue.2 , pp. 89-99
    • Maquat, L.E.1
  • 38
    • 0002155258 scopus 로고
    • Paleobiology of the Neoproterozoic Svanbergfjellet formation, Spitsbergen
    • Paleobiology of the Neoproterozoic Svanbergfjellet formation, Spitsbergen. NJ Butterfield AH Knoll K Swett, Fossils Strata 1994 34 1 84
    • (1994) Fossils Strata , vol.34 , pp. 1-84
    • Butterfield, N.J.1    Knoll, A.H.2    Swett, K.3
  • 40
    • 0029550708 scopus 로고
    • Why does the genetic code deviate so easily in ciliates?
    • 10.1016/0248-4900(96)85270-1. 8785511
    • Why does the genetic code deviate so easily in ciliates? J Cohen A Adoutte, Biol Cell 1995 85 2-3 105 108 10.1016/0248-4900(96)85270-1 8785511
    • (1995) Biol Cell , vol.85 , Issue.2-3 , pp. 105-108
    • Cohen, J.1    Adoutte, A.2
  • 41
    • 49249126734 scopus 로고    scopus 로고
    • Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of diplomonads
    • 10.1186/1471-2148-8-205. 18627633
    • Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of diplomonads. M Kolisko I Cepicka V Hampl J Leigh AJ Roger J Kulda AGB Simpson J Flegr, BMC Evol Biol 2008 8 205 10.1186/1471-2148-8- 205 18627633
    • (2008) BMC Evol Biol , vol.8 , pp. 205
    • Kolisko, M.1    Cepicka, I.2    Hampl, V.3    Leigh, J.4    Roger, A.J.5    Kulda, J.6    Simpson, A.G.B.7    Flegr, J.8
  • 42
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • 10.1146/annurev.genet.39.073003.112240. 16285855
    • Concerted and birth-and-death evolution of multigene families. M Nei AP Rooney, Annu Rev Genet 2005 39 121 152 10.1146/annurev.genet.39.073003.112240 16285855
    • (2005) Annu Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 43
    • 41849099636 scopus 로고    scopus 로고
    • Genomic outposts serve the phylogenomic pioneers: Designing novel nuclear markers for genomic DNA extractions of Lepidoptera
    • 10.1080/10635150802033006. 18398768
    • Genomic outposts serve the phylogenomic pioneers: designing novel nuclear markers for genomic DNA extractions of Lepidoptera. N Wahlberg CW Wheat, Syst Biol 2008 57 2 231 242 10.1080/10635150802033006 18398768
    • (2008) Syst Biol , vol.57 , Issue.2 , pp. 231-242
    • Wahlberg, N.1    Wheat, C.W.2
  • 44
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of Phylogenetics and Evolution in R language
    • 10.1093/bioinformatics/btg412. 14734327
    • APE: Analyses of Phylogenetics and Evolution in R language. E Paradis J Claude K Strimmer, Bioinformatics 2004 20 2 289 290 10.1093/bioinformatics/ btg412 14734327
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 45
    • 0031417707 scopus 로고    scopus 로고
    • Likelihood of ancestor states in adaptive radiation
    • 10.2307/2410994
    • Likelihood of ancestor states in adaptive radiation. D Schluter T Price AO Mooers D Ludwig, Evolution 1997 51 6 1699 1711 10.2307/2410994
    • (1997) Evolution , vol.51 , Issue.6 , pp. 1699-1711
    • Schluter, D.1    Price, T.2    Mooers, A.O.3    Ludwig, D.4
  • 47
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • DOI 10.1080/10635150290069913
    • An approximately unbiased test of phylogenetic tree selection. H Shimodaira, Syst Biol 2002 51 3 492 508 10.1080/10635150290069913 12079646 (Pubitemid 35180700)
    • (2002) Systematic Biology , vol.51 , Issue.3 , pp. 492-508
    • Shimodaira, H.1
  • 48
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • 10.1093/bioinformatics/17.12.1246. 11751242
    • CONSEL: for assessing the confidence of phylogenetic tree selection. H Shimodaira M Hasegawa, Bioinformatics 2001 17 12 1246 1247 10.1093/ bioinformatics/17.12.1246 11751242
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.