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Volumn 70, Issue 1, 2010, Pages 13-28

Certain non-standard coding tables appear to be more robust to error than the standard genetic code

Author keywords

Alternative (non standard) genetic codes; Coding table; Codon reassignments; Evolution; Robustness

Indexed keywords

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CODON; GENETIC CODE; GENETICS; HUMAN; MOLECULAR GENETICS;

EID: 76749121381     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-009-9303-9     Document Type: Article
Times cited : (12)

References (34)
  • 1
    • 0031777847 scopus 로고    scopus 로고
    • On error minimization in a sequential origin of the standard genetic code
    • Ardell DH (1998) On error minimization in a sequential origin of the standard genetic code. J Mol Evol 47:113
    • (1998) J Mol Evol , vol.47 , pp. 113
    • Ardell, D.H.1
  • 2
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick FHC (1968) The origin of the genetic code. J Mol Biol 38:367-379
    • (1968) J Mol Biol , vol.38 , pp. 367-379
    • Crick, F.H.C.1
  • 4
    • 24644496099 scopus 로고    scopus 로고
    • Monte Carlo simulation and statistical analysis of genetic information coding
    • Gultepe E, Kurnaz ML (2005) Monte Carlo simulation and statistical analysis of genetic information coding. Physica A 357:525533
    • (2005) Physica A , vol.357 , pp. 525533
    • Gultepe, E.1    Kurnaz, M.L.2
  • 5
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff S, Henikoff JG (1992) Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89:1091510919
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1091510919
    • Henikoff, S.1    Henikoff, J.G.2
  • 6
    • 33847032203 scopus 로고    scopus 로고
    • The genetic code is nearly optimal for allowing additional information within protein coding sequences
    • Itzkovitz S, Alon U (2007) The genetic code is nearly optimal for allowing additional information within protein coding sequences. Genome Res 17:405412
    • (2007) Genome Res , vol.17 , pp. 405412
    • Itzkovitz, S.1    Alon, U.2
  • 7
    • 0033278748 scopus 로고    scopus 로고
    • The genetic code: What is it good for? An analysis of the effects of selection pressures on genetic codes
    • Judson OP, Haydon D (1999) The genetic code: what is it good for? An analysis of the effects of selection pressures on genetic codes. J Mol Evol 49:539550
    • (1999) J Mol Evol , vol.49 , pp. 539550
    • Judson, O.P.1    Haydon, D.2
  • 8
    • 0024969080 scopus 로고
    • The codon CUG is read as serine in an asporogenic yeast Candida cylindacea
    • Kawaguchi Y, Honda H, Taniguichi-Morimura J, Iwasaki S (1989) The codon CUG is read as serine in an asporogenic yeast Candida cylindacea. Nature 341:164166
    • (1989) Nature , vol.341 , pp. 164166
    • Kawaguchi, Y.1    Honda, H.2    Taniguichi-Morimura, J.3    Iwasaki, S.4
  • 9
    • 0037074005 scopus 로고    scopus 로고
    • Shifty ciliates: Frequent programmed translational frameshifting in euplotids
    • Klobutcher LA, Farabaugh PJ (2002) Shifty ciliates: frequent programmed translational frameshifting in euplotids. Cell 111:763766
    • (2002) Cell , vol.111 , pp. 763766
    • Klobutcher, L.A.1    Farabaugh, P.J.2
  • 10
  • 11
    • 44649133996 scopus 로고    scopus 로고
    • A statistical analysis of the robustness of alternate genetic coding tables
    • Kurnaz ML, Bilgin T, Aksan Kurnaz I (2008) A statistical analysis of the robustness of alternate genetic coding tables. Int J Mol Sci 9:679697
    • (2008) Int J Mol Sci , vol.9 , pp. 679697
    • Kurnaz, M.L.1    Bilgin, T.2    Aksan Kurnaz, I.3
  • 13
    • 37649027551 scopus 로고    scopus 로고
    • Simplified amino acid alphabets based on deviation of conditional probability from random background
    • Liu X, Liu D, Qi J, Zheng WM (2002) Simplified amino acid alphabets based on deviation of conditional probability from random background. Phys Rev E 66:021906
    • (2002) Phys Rev e , vol.66 , pp. 021906
    • Liu, X.1    Liu, D.2    Qi, J.3    Zheng, W.M.4
  • 14
    • 0035936577 scopus 로고    scopus 로고
    • The molecular basis of nuclear genetic code change in ciliates
    • Lozupone CA, Knight RD, Landweber LF (2001) The molecular basis of nuclear genetic code change in ciliates. Curr Biol 11:6574
    • (2001) Curr Biol , vol.11 , pp. 6574
    • Lozupone, C.A.1    Knight, R.D.2    Landweber, L.F.3
  • 15
    • 0032574805 scopus 로고    scopus 로고
    • The role of robustness and changeability on the origin and evolution of genetic codes
    • Maeshiro T, Kimora M (1998) The role of robustness and changeability on the origin and evolution of genetic codes. Proc Natl Acad Sci 95:50885093
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 50885093
    • Maeshiro, T.1    Kimora, M.2
  • 16
    • 33744510963 scopus 로고    scopus 로고
    • Do universal codon-usage patterns minimize the effects of mutation and translation error?
    • Marquez R, Smit S, Knight R (2005) Do universal codon-usage patterns minimize the effects of mutation and translation error? Genome Biol 6:R91
    • (2005) Genome Biol , vol.6
    • Marquez, R.1    Smit, S.2    Knight, R.3
  • 18
    • 0029919190 scopus 로고    scopus 로고
    • Residueresidue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading
    • Miyazawa S, Jernigan RL (1996) Residueresidue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. J Mol Biol 256:623644
    • (1996) J Mol Biol , vol.256 , pp. 623644
    • Miyazawa, S.1    Jernigan, R.L.2
  • 19
    • 38549109625 scopus 로고    scopus 로고
    • Evolution of the genetic code: Partial optimization of a random code for robustness to translation error in a rugged fitness landscape
    • Novozhilov AS, Wolf YI, Koonin EV (2007) Evolution of the genetic code: partial optimization of a random code for robustness to translation error in a rugged fitness landscape. Biol Direct 2:24
    • (2007) Biol Direct , vol.2 , pp. 24
    • Novozhilov, A.S.1    Wolf, Y.I.2    Koonin, E.V.3
  • 21
    • 38349112697 scopus 로고    scopus 로고
    • Consequences of stop codon reassignment on protein evolution in ciliates with alternative genetic codes
    • Ring KL, Cavalcanti RO (2008) Consequences of stop codon reassignment on protein evolution in ciliates with alternative genetic codes. Mol Biol Evol 25:179186
    • (2008) Mol Biol Evol , vol.25 , pp. 179186
    • Ring, K.L.1    Cavalcanti, R.O.2
  • 22
    • 0029045375 scopus 로고
    • The CUG codon is decoded in vivo as serine and not leucine in Candida albicans
    • Santos MA, Tuite MF (1995) The CUG codon is decoded in vivo as serine and not leucine in Candida albicans. Nucleic Acids Res 23:14811486
    • (1995) Nucleic Acids Res , vol.23 , pp. 14811486
    • Santos, M.A.1    Tuite, M.F.2
  • 23
    • 0032911874 scopus 로고    scopus 로고
    • Selective advantages created by codon ambiguity allowed for the evolution of an alternative genetic code in Candida spp
    • Santos MA, Cheesman C, Costa V, Moradas-Ferreira P, Tuite MF (1999) Selective advantages created by codon ambiguity allowed for the evolution of an alternative genetic code in Candida spp.Mol Microbiol 31:937947
    • (1999) Mol Microbiol , vol.31 , pp. 937947
    • Santos, M.A.1    Cheesman, C.2    Costa, V.3    Moradas-Ferreira, P.4    Tuite, M.F.5
  • 24
    • 33748959526 scopus 로고    scopus 로고
    • The coevolution of genes and genetic codes: Cricks frozen accident revisited
    • Sella G, Ardell DH (2006) The coevolution of genes and genetic codes: Cricks frozen accident revisited. J Mol Evol 63:297313
    • (2006) J Mol Evol , vol.63 , pp. 297313
    • Sella, G.1    Ardell, D.H.2
  • 25
    • 22144437754 scopus 로고    scopus 로고
    • A unified model of codon reassignment in alternative genetic codes
    • Sengupta S, Higgs PG (2005) A unified model of codon reassignment in alternative genetic codes. Genetics 170:831840
    • (2005) Genetics , vol.170 , pp. 831840
    • Sengupta, S.1    Higgs, P.G.2
  • 26
    • 34250704167 scopus 로고    scopus 로고
    • The mechanisms of codon reassignments in mitochondrial genetic codes
    • Sengupta S, Yang X, Higgs PG (2007) The mechanisms of codon reassignments in mitochondrial genetic codes. J Mol Evol 64:662 688
    • (2007) J Mol Evol , vol.64 , pp. 662688
    • Sengupta, S.1    Yang, X.2    Higgs, P.G.3
  • 27
    • 10844224782 scopus 로고    scopus 로고
    • Yeast as a model organism for studying the evolution of non-standard genetic codes
    • Silva RM, Miranda I, Moura G, Santos MA (2004) Yeast as a model organism for studying the evolution of non-standard genetic codes. Genomics Proteomics 3:3546
    • (2004) Genomics Proteomics , vol.3 , pp. 3546
    • Silva, R.M.1    Miranda, I.2    Moura, G.3    Santos, M.A.4
  • 28
    • 35748937608 scopus 로고    scopus 로고
    • Amino acid exchangeability and the adaptive code hypothesis
    • Stoltzfus A, Yampolsky LY (2007) Amino acid exchangeability and the adaptive code hypothesis. J Mol Evol 65:456462
    • (2007) J Mol Evol , vol.65 , pp. 456462
    • Stoltzfus, A.1    Yampolsky, L.Y.2
  • 29
  • 33
    • 0035422776 scopus 로고    scopus 로고
    • Roles for 147 embryonic lethal genes on C. elegans chromosome i identified by RNA interference and video microscopy
    • Zipperlen P, Fraser AG, Kamath RS, Martinez-Campos M, Ahringer J (2001) Roles for 147 embryonic lethal genes on C. elegans chromosome I identified by RNA interference and video microscopy. EMBO J 20(15):39843992
    • (2001) EMBO J , vol.20 , Issue.15 , pp. 39843992
    • Zipperlen, P.1    Fraser, A.G.2    Kamath, R.S.3    Martinez-Campos, M.4    Ahringer, J.5
  • 34
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • Bryson V, Vogel HJ (eds) Academic Press, New York 28
    • Zuckerkandl E, Pauling L (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel HJ (eds) Evolving genes and proteins. Academic Press, New York 28
    • (1965) Evolving Genes and Proteins
    • Zuckerkandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.