Modifiers of notch transcriptional activity identified by genome-wide RNAi

BMC Developmental Biology

Volumn 10, Issue , 2010, Pages

  Mourikis, Philippos ^b   Lake, Robert J ^c   Firnhaber, Christopher B ^a   DeDecker, Brian S ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b INSTITUT PASTEUR   (France)

^c FOX CHASE CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DROSOPHILA PROTEIN; NOTCH RECEPTOR; TRANSCRIPTION FACTOR;

ANIMAL; ARTICLE; CELL LINE; CHROMATIN; DROSOPHILA MELANOGASTER; GENETIC EPISTASIS; GENETIC TRANSCRIPTION; GENETICS; GENOME; METABOLISM; MUTATION; PROTEIN ANALYSIS; RIBOSOME; RNA INTERFERENCE; SIGNAL TRANSDUCTION;

ANIMALS; CELL LINE; CHROMATIN; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; EPISTASIS, GENETIC; GENOME; MUTATION; PROTEIN INTERACTION MAPPING; RECEPTORS, NOTCH; RIBOSOMES; RNA INTERFERENCE; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 77957904590     PISSN: None     EISSN: 1471213X     Source Type: Journal    
DOI: 10.1186/1471-213X-10-107     Document Type: Article

References (52)

1. Notch signaling: cell fate control and signal integration in development. S Artavanis-Tsakonas M Rand R Lake, Science 1999 284 770 6 10.1126/science.284. 5415.770 10221902
2. Specific truncations of Drosophila Notch define dominant activated and dominant negative forms of the receptor. I Rebay RG Fehon S Artavanis-Tsakonas, Cell 1993 74 319 29 10.1016/0092-8674(93)90423-N 8343959
3. Regulation of Notch signalling by non-visual beta-arrestin. A Mukherjee A Veraksa A Bauer C Rosse J Camonis S Artavanis-Tsakonas, Nat Cell Biol 2005 7 1191 201 10.1038/ncb1327 16284625
4. Notch activation stimulates transient and selective binding of Su(H)/CSL to target enhancers. A Krejcí S Bray, Genes & Development 2007 21 1322 7 10.1101/gad.424607 17545467
5. FlyBase: integration and improvements to query tools. R Wilson J Goodman V Strelets, Nucleic Acids Res 2008 36 588 93 10.1093/nar/gkm930 18160408
6. A systematic analysis of human disease-associated gene sequences in Drosophila melanogaster. L Reiter L Potocki S Chien M Gribskov E Bier, Genome Res 2001 11 1114 25 10.1101/gr.169101 11381037
7. Genetic characterization of the Drosophila melanogaster Suppressor of deltex gene: A regulator of notch signaling. M Fostier D Evans S Artavanis-Tsakonas M Baron, Genetics 1998 150 1477 85 9832525
8. Frizzled regulation of Notch signalling polarizes cell fate in the Drosophila eye. M Cooper S Bray, Nature 1999 397 526 30 10.1038/17395 10028969
9. Genetic interactions among vestigial, hairy, and Notch suggest a role of vestigial in the differentiation of epidermal and neural cells of the wing and halter of Drosophila melanogaster. R Abu-Issa S Cavicchi, J Neurogenet 1996 10 239 46 10.3109/01677069609083465 8923297
10. Regulation of gene expression in the distal region of the Drosophila leg by the Hox11 homolog, C15. G Campbell, Dev Biol 2005 278 607 18 10.1016/j.ydbio.2004.12.009 15680373
11. Lobe mediates Notch signaling to control domain-specific growth in the Drosophila eye disc. J Chern K Choi, Development 2002 129 4005 13 12163404
12. Hephaestus encodes a polypyrimidine tract binding protein that regulates Notch signalling during wing development in Drosophila melanogaster. D Dansereau M Lunke A Finkielsztein M Russell W Brook, Development 2002 129 5553 66 10.1242/dev.00153 12421697
13. Growth and specification of the eye are controlled independently by Eyegone and Eyeless in Drosophila melanogaster. M Dominguez D Ferres-Marco F Gutierrez-Avino S Speicher M Beneyto, Nat Genet 2004 36 31 9 10.1038/ng1281 14702038
14. Nipped-A, the Tra1/TRRAP subunit of the Drosophila SAGA and Tip60 complexes, has multiple roles in Notch signaling during wing development. M Gause JC Eissenberg AF Macrae M Dorsett Z Misulovin D Dorsett, Mol Cell Biol 2006 26 2347 59 10.1128/MCB.26.6.2347-2359.2006 16508010
15. A Minute encoding a ribosomal protein enhances wing morphogenesis mutants. K Hart T Klein M Wilcox, Mech Dev 1993 43 101 10 10.1016/0925-4773(93) 90028-V 8297785
16. Analysis of dominant enhancers and suppressors of activated Notch in Drosophila. E Verheyen K Purcell M Fortini S Artavanis-Tsakonas, Genetics 1996 144 1127 41 8913755
17. Histone demethylase KDM5A is an integral part of the core Notch-RBP-J repressor complex. R Liefke F Oswald C Alvarado D Ferres-Marco G Mittler P Rodriguez M Dominguez T Borggrefe, Genes & Development 2010 24 590 601 10.1101/gad.563210 20231316
18. Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. JL Mummery-Widmer M Yamazaki T Stoeger M Novatchkova S Bhalerao D Chen G Dietzl BJ Dickson JA Knoblich, Nature 2009 458 987 92 10.1038/nature07936 19363474
19. DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions. J Yu S Pacifico G Liu RL Finley, BMC Genomics 2008 9 461 10.1186/1471-2164-9-461 18840285
20. The BioGRID Interaction Database: 2008 update. BJ Breitkreutz C Stark T Reguly L Boucher A Breitkreutz M Livstone R Oughtred DH Lackner J Bähler V Wood, et al. Nucleic Acids Res 2008 36 637 40 10.1093/nar/gkm1001 18000002
21. Genetic screens for enhancers of brahma reveal functional interactions between the BRM chromatin-remodeling complex and the delta-notch signal transduction pathway in Drosophila. JA Armstrong AS Sperling R Deuring L Manning SL Moseley O Papoulas CI Piatek CQ Doe JW Tamkun, Genetics 2005 170 1761 74 10.1534/genetics.105.041327 15944353
22. Histone chaperones ASF1 and NAP1 differentially modulate removal of active histone marks by LID-RPD3 complexes during NOTCH silencing. YM Moshkin TW Kan H Goodfellow K Bezstarosti RK Maeda M Pilyugin F Karch SJ Bray JAA Demmers CP Verrijzer, Mol Cell 2009 35 782 93 10.1016/j.molcel.2009.07.020 19782028
23. Gene-specific targeting of the histone chaperone asf1 to mediate silencing. H Goodfellow A Krejcí Y Moshkin CP Verrijzer F Karch SJ Bray, Developmental Cell 2007 13 593 600 10.1016/j.devcel.2007.08.021 17925233
24. Self-refinement of Notch activity through the transmembrane protein Crumbs: modulation of gamma-secretase activity. H Herranz E Stamataki F Feiguin M Milan, EMBO Rep 2006 7 297 302 10.1038/sj.embor.7400617 16440003
25. Nipped-B, a Drosophila homologue of chromosomal adherins, participates in activation by remote enhancers in the cut and Ultrabithorax genes. R Rollins P Morcillo D Dorsett, Genetics 1999 152 577 93 10353901
26. Histone deacetylase: a regulator of transcription. A Wolffe, Science 1996 272 371 2 10.1126/science.272.5260.371 8602525
27. The histone variant H3.3 marks active chromatin by replication- independent nucleosome assembly. K Ahmad S Henikoff, Mol Cell 2002 9 1191 200 10.1016/S1097-2765(02)00542-7 12086617
28. Chromatin remodelling during development. L Ho GR Crabtree, Nature 2010 463 474 84 10.1038/nature08911 20110991
29. Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. S Laubinger T Sachsenberg G Zeller W Busch JU Lohmann G Rätsch D Weigel, Proc Natl Acad Sci USA 2008 105 8795 800 10.1073/pnas.0802493105 18550839
30. Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation. JJ Gruber DS Zatechka LR Sabin J Yong JJ Lum M Kong WX Zong Z Zhang C-K Lau J Rawlings, et al. Cell 2009 138 328 39 10.1016/j.cell.2009.04.046 19632182
31. Ars2 regulates both miRNA- and siRNA- dependent silencing and suppresses RNA virus infection in Drosophila. LR Sabin R Zhou JJ Gruber N Lukinova S Bambina A Berman C-K Lau CB Thompson S Cherry, Cell 2009 138 340 51 10.1016/j.cell.2009.04.045 19632183
32. Minutes: mutants of drosophila autonomously affecting cell division rate. G Morata P Ripoll, Dev Biol 1975 42 211 21 10.1016/0012-1606(75)90330-9 1116643
33. The minute genes in Drosophila and their molecular functions. A Lambertsson, Adv Genet 1998 38 69 134 full-text 9677706
34. An EP overexpression screen for genetic modifiers of Notch pathway function in Drosophila melanogaster. LE Hall SJ Alexander M Chang NS Woodling B Yedvobnick, Genet Res 2004 83 71 82 10.1017/S0016672304006731 15219152
35. Second-site modifiers of the Delta wing phenotype in Drosophila melanogaster. T Klein JA Campos-Ortega, Roux's Archives of Developmental Biology 1992 202 49 60 10.1007/BF00364596
36. The Minute Reaction in the Development of DROSOPHILA MELANOGASTER. J Schultz, Genetics 1929 14 366 419 17246581
37. The expression of neurogenic loci in imaginal epidermal cells of Drosophila melanogaster. U Dietrich JA Campos-Ortega, J Neurogenet 1984 1 315 32 10.3109/01677068409107094 6443124
38. A genetic screen for elements of the network that regulates neurogenesis in Drosophila. G Röttgen T Wagner U Hinz, Mol Gen Genet 1998 257 442 51 10.1007/s004380050668 9529525
39. A newly identified Minute locus, M(2)32D, encodes the ribosomal protein L9 in Drosophila melanogaster. A Schmidt M Hollmann U Schäfer, Mol Gen Genet 1996 251 381 7 8676882
40. Protein folding on the ribosome. LD Cabrita CM Dobson J Christodoulou, Current Opinion in Structural Biology 2010 20 33 45 10.1016/j.sbi.2010.01.005 20149635
41. Cap 'n' collar B cooperates with a small Maf subunit to specify pharyngeal development and suppress deformed homeotic function in the Drosophila head. A Veraksa N McGinnis X Li J Mohler W McGinnis, Development 2000 127 4023 37 10952900
42. DEAF-1 function is essential for the early embryonic development of Drosophila. A Veraksa J Kennison W McGinnis, genesis 2002 33 67 76 10.1002/gene.10090 12112874
43. Bonus, a Drosophila homolog of TIF1 proteins, interacts with nuclear receptors and can inhibit betaFTZ-F1-dependent transcription. R Beckstead J Ortiz C Sanchez S Prokopenko P Chambon R Losson H Bellen, Mol Cell 2001 7 753 65 10.1016/S1097-2765(01)00220-9 11336699
44. crooked legs encodes a family of zinc finger proteins required for leg morphogenesis and ecdysone-regulated gene expression during Drosophila metamorphosis. P D'Avino C Thummel, Development 1998 125 1733 45 9521911
45. Notch signalling mediates segmentation of the Drosophila leg. J de Celis D Tyler J de Celis S Bray, Development 1998 125 4617 26 9806911
46. Genetic modifier screens on Hairless gain-of-function phenotypes reveal genes involved in cell differentiation, cell growth and apoptosis in Drosophila melanogaster. D Muller S Kugler A Preiss D Maier A Nagel, Genetics 2005 171 1137 52 10.1534/genetics.105.044453 16118195
47. Oncogenic activation of c-Myb correlates with a loss of negative regulation by TIF1beta and Ski. T Nomura J Tanikawa H Akimaru C Kanei-Ishii E Ichikawa-Iwata M Khan Ito H S Ishii, J Biol Chem 2004 279 16715 26 10.1074/jbc.M313069200 14761981
48. Control of daughter cell fates during asymmetric division: interaction of Numb and Notch. M Guo L Jan Y Jan, Neuron 1996 17 27 41 10.1016/S0896-6273(00) 80278-0 8755476
49. Microarray data normalization and transformation. J Quackenbush, Nat Genet 2002 32 Suppl 496 501 10.1038/ng1032 12454644
50. E-RNAi: a web application to design optimized RNAi constructs. Z Arziman T Horn M Boutros, Nucleic Acids Res 2005 33 582 8 10.1093/nar/gki468 15980541
51. Cytoscape: a software environment for integrated models of biomolecular interaction networks. P Shannon A Markiel O Ozier NS Baliga JT Wang D Ramage N Amin B Schwikowski T Ideker, Genome Res 2003 13 2498 504 10.1101/gr.1239303 14597658
52. InParanoid 6: eukaryotic ortholog clusters with inparalogs. AC Berglund E Sjölund G Ostlund ELL Sonnhammer, Nucleic Acids Res 2008 36 263 6 10.1093/nar/gkm1020 18055500