-
1
-
-
59649129564
-
Import of nuclear-encoded mitochondrial proteins: A cotranslational perspective
-
Ahmed, A. U., and P. R. Fisher. 2009. Import of nuclear-encoded mitochondrial proteins: a cotranslational perspective. Int. Rev. Cell Mol. Biol. 273:49-68.
-
(2009)
Int. Rev. Cell Mol. Biol.
, vol.273
, pp. 49-68
-
-
Ahmed, A.U.1
Fisher, P.R.2
-
2
-
-
0033756041
-
The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: Implications for roles of RNases H in DNA replication and repair
-
Arudchandran, A., S. Cerritelli, S. Narimatsu, M. Itaya, D. Y. Shin, Y. Shimada, and R. J. Crouch. 2000. The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: implications for roles of RNases H in DNA replication and repair. Genes Cells 5:789-802.
-
(2000)
Genes Cells
, vol.5
, pp. 789-802
-
-
Arudchandran, A.1
Cerritelli, S.2
Narimatsu, S.3
Itaya, M.4
Shin, D.Y.5
Shimada, Y.6
Crouch, R.J.7
-
3
-
-
0036854308
-
Multiple ribonuclease H-encoding genes in the Caenorhabditis elegans genome contrasts with the two typical ribonuclease H-encoding genes in the human genome
-
Arudchandran, A., S. M. Cerritelli, N. J. Bowen, X. Chen, M. W. Krause, and R. J. Crouch. 2002. Multiple ribonuclease H-encoding genes in the Caenorhabditis elegans genome contrasts with the two typical ribonuclease H-encoding genes in the human genome. Mol. Biol. Evol. 19:1910-1919.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1910-1919
-
-
Arudchandran, A.1
Cerritelli, S.M.2
Bowen, N.J.3
Chen, X.4
Krause, M.W.5
Crouch, R.J.6
-
4
-
-
66149118241
-
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
-
Calvo, S. E., D. J. Pagliarini, and V. K. Mootha. 2009. Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. Proc. Natl. Acad. Sci. U. S. A. 106:7507-7512.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 7507-7512
-
-
Calvo, S.E.1
Pagliarini, D.J.2
Mootha, V.K.3
-
5
-
-
0032213759
-
Cloning, expression, and mapping of ribonucleases H of human and mouse related to bacterial RNase HI
-
Cerritelli, S. M., and R. J. Crouch. 1998. Cloning, expression, and mapping of ribonucleases H of human and mouse related to bacterial RNase HI. Genomics 53:300-307.
-
(1998)
Genomics
, vol.53
, pp. 300-307
-
-
Cerritelli, S.M.1
Crouch, R.J.2
-
6
-
-
61349102407
-
Ribonuclease H: The enzymes in eukaryotes
-
Cerritelli, S. M., and R. J. Crouch. 2009. Ribonuclease H: the enzymes in eukaryotes. FEBS J. 276:1494-1505.
-
(2009)
FEBS J.
, vol.276
, pp. 1494-1505
-
-
Cerritelli, S.M.1
Crouch, R.J.2
-
7
-
-
0345354684
-
Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice
-
Cerritelli, S. M., E. G. Frolova, C. Feng, A. Grinberg, P. E. Love, and R. J. Crouch. 2003. Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice. Mol. Cell 11:807-815.
-
(2003)
Mol. Cell
, vol.11
, pp. 807-815
-
-
Cerritelli, S.M.1
Frolova, E.G.2
Feng, C.3
Grinberg, A.4
Love, P.E.5
Crouch, R.J.6
-
8
-
-
0026647878
-
Cytoplasmic and mitochondrial tRNA nucleotidyltransferase activities are derived from the same gene in the yeast Saccharomyces cerevisiae
-
Chen, J. Y., P. B. Joyce, C. L. Wolfe, M. C. Steffen, and N. C. Martin. 1992. Cytoplasmic and mitochondrial tRNA nucleotidyltransferase activities are derived from the same gene in the yeast Saccharomyces cerevisiae. J. Biol. Chem. 267:14879-14883.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 14879-14883
-
-
Chen, J.Y.1
Joyce, P.B.2
Wolfe, C.L.3
Steffen, M.C.4
Martin, N.C.5
-
9
-
-
0034803110
-
RNase H1 of Saccharomyces cerevisiae: Methods and nomenclature
-
Crouch, R. J., A. Arudchandran, and S. M. Cerritelli. 2001. RNase H1 of Saccharomyces cerevisiae: methods and nomenclature. Methods Enzymol. 341:395-413.
-
(2001)
Methods Enzymol.
, vol.341
, pp. 395-413
-
-
Crouch, R.J.1
Arudchandran, A.2
Cerritelli, S.M.3
-
10
-
-
0037154965
-
Gene-specific regulation by general translation factors
-
DOI 10.1016/S0092-8674(02)00642-6
-
Dever, T. E. 2002. Gene-specific regulation by general translation factors. Cell 108:545-556. (Pubitemid 34260879)
-
(2002)
Cell
, vol.108
, Issue.4
, pp. 545-556
-
-
Dever, T.E.1
-
11
-
-
0036024971
-
Isolation of biogenetically competent mitochondria from mammalian tissues and cultured cells
-
Fernandez-Vizarra, E., M. J. Lopez-Perez, and J. A. Enriquez. 2002. Isolation of biogenetically competent mitochondria from mammalian tissues and cultured cells. Methods 26:292-297.
-
(2002)
Methods
, vol.26
, pp. 292-297
-
-
Fernandez-Vizarra, E.1
Lopez-Perez, M.J.2
Enriquez, J.A.3
-
12
-
-
0034890460
-
Drosophila RNase H1 is essential for development but not for proliferation
-
Filippov, V., M. Filippov, and S. S. Gill. 2001. Drosophila RNase H1 is essential for development but not for proliferation. Mol. Genet. Genomics 265:771-777.
-
(2001)
Mol. Genet. Genomics
, vol.265
, pp. 771-777
-
-
Filippov, V.1
Filippov, M.2
Gill, S.S.3
-
13
-
-
17844383717
-
Eukaryotic RNases H1 act processively by interactions through the duplex RNA-binding domain
-
Gaidamakov, S. A., I. I. Gorshkova, P. Schuck, P. J. Steinbach, H. Yamada, R. J. Crouch, and S. M. Cerritelli. 2005. Eukaryotic RNases H1 act processively by interactions through the duplex RNA-binding domain. Nucleic Acids Res. 33:2166-2175.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2166-2175
-
-
Gaidamakov, S.A.1
Gorshkova, I.I.2
Schuck, P.3
Steinbach, P.J.4
Yamada, H.5
Crouch, R.J.6
Cerritelli, S.M.7
-
14
-
-
0030699278
-
Ribonuclease H renaturation gel assay using a fluorescent-labeled substrate
-
Han, L. Y., W. P. Ma, and R. J. Crouch. 1997. Ribonuclease H renaturation gel assay using a fluorescent-labeled substrate. Biotechniques 23:920-926.
-
(1997)
Biotechniques
, vol.23
, pp. 920-926
-
-
Han, L.Y.1
Ma, W.P.2
Crouch, R.J.3
-
15
-
-
0025189805
-
Changes in the number of mitochondrial genomes during human development
-
Heerdt, B. G., and L. H. Augenlicht. 1990. Changes in the number of mitochondrial genomes during human development. Exp. Cell Res. 186:54-59.
-
(1990)
Exp. Cell Res.
, vol.186
, pp. 54-59
-
-
Heerdt, B.G.1
Augenlicht, L.H.2
-
16
-
-
17144424622
-
Translational control in stress and apoptosis
-
Holcik, M., and N. Sonenberg. 2005. Translational control in stress and apoptosis. Nat. Rev. Mol. Cell Biol. 6:318-327.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 318-327
-
-
Holcik, M.1
Sonenberg, N.2
-
17
-
-
20044387943
-
Single translation-dual destination: Mechanisms of dual protein targeting in eukaryotes
-
DOI 10.1038/sj.embor.7400394
-
Karniely, S., and O. Pines. 2005. Single translation - dual destination: mechanisms of dual protein targeting in eukaryotes. EMBO Rep. 6:420-425. (Pubitemid 40767074)
-
(2005)
EMBO Reports
, vol.6
, Issue.5
, pp. 420-425
-
-
Karniely, S.1
Pines, O.2
-
18
-
-
33645034942
-
Stage-specific expression of Caenorhabditis elegans ribonuclease H1 enzymes with different substrate specificities and bivalent cation requirements
-
Kochiwa, H., M. Itaya, M. Tomita, and A. Kanai. 2006. Stage-specific expression of Caenorhabditis elegans ribonuclease H1 enzymes with different substrate specificities and bivalent cation requirements. FEBS J. 273:420-429.
-
(2006)
FEBS J.
, vol.273
, pp. 420-429
-
-
Kochiwa, H.1
Itaya, M.2
Tomita, M.3
Kanai, A.4
-
19
-
-
0023665902
-
An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs
-
Kozak, M. 1987. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15:8125-8148.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8125-8148
-
-
Kozak, M.1
-
20
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
-
Livak, K. J., and T. D. Schmittgen. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
21
-
-
76649126393
-
Construction and testing of engineered zinc-finger proteins for sequence-specific modification of mtDNA
-
Minczuk, M., P. Kolasinska-Zwierz, M. P. Murphy, and M. A. Papworth. 2010. Construction and testing of engineered zinc-finger proteins for sequence-specific modification of mtDNA. Nat. Protoc. 5:342-356.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 342-356
-
-
Minczuk, M.1
Kolasinska-Zwierz, P.2
Murphy, M.P.3
Papworth, M.A.4
-
22
-
-
0035313402
-
What regulates mitochondrial DNA copy number in animal cells?
-
Moraes, C. T. 2001. What regulates mitochondrial DNA copy number in animal cells? Trends Genet. 17:199-205.
-
(2001)
Trends Genet.
, vol.17
, pp. 199-205
-
-
Moraes, C.T.1
-
23
-
-
0034459468
-
Upstream open reading frames as regulators of mRNA translation
-
Morris, D. R., and A. P. Geballe. 2000. Upstream open reading frames as regulators of mRNA translation. Mol. Cell. Biol. 20:8635-8642.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 8635-8642
-
-
Morris, D.R.1
Geballe, A.P.2
-
24
-
-
0035955658
-
Identification and characterization of mammalian mitochondrial tRNA nucleotidyltransferases
-
Nagaike, T., T. Suzuki, Y. Tomari, C. Takemoto-Hori, F. Negayama, K. Watanabe, and T. Ueda. 2001. Identification and characterization of mammalian mitochondrial tRNA nucleotidyltransferases. J. Biol. Chem. 276:40041-40049.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 40041-40049
-
-
Nagaike, T.1
Suzuki, T.2
Tomari, Y.3
Takemoto-Hori, C.4
Negayama, F.5
Watanabe, K.6
Ueda, T.7
-
25
-
-
33845629364
-
Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells
-
Pohjoismaki, J. L., S. Wanrooij, A. K. Hyvarinen, S. Goffart, I. J. Holt, J. N. Spelbrink, and H. T. Jacobs. 2006. Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells. Nucleic Acids Res. 34:5815-5828.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5815-5828
-
-
Pohjoismaki, J.L.1
Wanrooij, S.2
Hyvarinen, A.K.3
Goffart, S.4
Holt, I.J.5
Spelbrink, J.N.6
Jacobs, H.T.7
-
26
-
-
77950473394
-
Mammalian mitochondrial DNA replication intermediates are essentially duplex but contain extensive tracts of RNA/DNA hybrid
-
Pohjoismäki, J. L. O., J. B. Holmes, S. R. Wood, M. Y. Yang, T. Yasukawa, A. Reyes, L. J. Bailey, T. J. Cluett, S. Goffart, S. Willcox, R. E. Rigby, A. P. Jackson, J. N. Spelbrink, J. D. Griffith, R. J. Crouch, H. T. Jacobs, and I. J. Holt. 2010. Mammalian mitochondrial DNA replication intermediates are essentially duplex but contain extensive tracts of RNA/DNA hybrid. J. Mol. Biol. 397:1144-1155.
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 1144-1155
-
-
Pohjoismäki, J.L.O.1
Holmes, J.B.2
Wood, S.R.3
Yang, M.Y.4
Yasukawa, T.5
Reyes, A.6
Bailey, L.J.7
Cluett, T.J.8
Goffart, S.9
Willcox, S.10
Rigby, R.E.11
Jackson, A.P.12
Spelbrink, J.N.13
Griffith, J.D.14
Crouch, R.J.15
Jacobs, H.T.16
Holt, I.J.17
-
27
-
-
34547619977
-
Eclipsed distribution: A phenomenon of dual targeting of protein and its significance
-
DOI 10.1002/bies.20609
-
Regev-Rudzki, N., and O. Pines. 2007. Eclipsed distribution: a phenomenon of dual targeting of protein and its significance. Bioessays 29:772-782. (Pubitemid 47204282)
-
(2007)
BioEssays
, vol.29
, Issue.8
, pp. 772-782
-
-
Regev-Rudzki, N.1
Pines, O.2
-
28
-
-
0035866205
-
The draft sequences: Comparing species
-
Rubin, G. M. 2001. The draft sequences: comparing species. Nature 409:820-821.
-
(2001)
Nature
, vol.409
, pp. 820-821
-
-
Rubin, G.M.1
-
29
-
-
33747061006
-
The 3′-untranslated region directs ribosomal protein-encoding mRNAs to specific cytoplasmic regions
-
Russo, A., G. Russo, M. Cuccurese, C. Garbi, and C. Pietropaolo. 2006. The 3′-untranslated region directs ribosomal protein-encoding mRNAs to specific cytoplasmic regions. Biochim. Biophys. Acta 1763:833-843.
-
(2006)
Biochim. Biophys. Acta
, vol.1763
, pp. 833-843
-
-
Russo, A.1
Russo, G.2
Cuccurese, M.3
Garbi, C.4
Pietropaolo, C.5
-
30
-
-
42049114034
-
Transcriptional paradigms in mammalian mitochondrial biogenesis and function
-
Scarpulla, R. C. 2008. Transcriptional paradigms in mammalian mitochondrial biogenesis and function. Physiol. Rev. 88:611-638.
-
(2008)
Physiol. Rev.
, vol.88
, pp. 611-638
-
-
Scarpulla, R.C.1
-
31
-
-
34250766201
-
The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins
-
Schmidt, T. G., and A. Skerra. 2007. The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins. Nat. Protoc. 2:1528-1535.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1528-1535
-
-
Schmidt, T.G.1
Skerra, A.2
-
32
-
-
60149091189
-
Regulation of translation initiation in eukaryotes: Mechanisms and biological targets
-
Sonenberg, N., and A. G. Hinnebusch. 2009. Regulation of translation initiation in eukaryotes: mechanisms and biological targets. Cell 136:731-745.
-
(2009)
Cell
, vol.136
, pp. 731-745
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
33
-
-
19944383101
-
Twinkle helicase is essential for mtDNA maintenance and regulates mtDNA copy number
-
Tyynismaa, H., H. Sembongi, M. Bokori-Brown, C. Granycome, N. Ashley, J. Poulton, A. Jalanko, J. N. Spelbrink, I. J. Holt, and A. Suomalainen. 2004. Twinkle helicase is essential for mtDNA maintenance and regulates mtDNA copy number. Hum. Mol. Genet. 13:3219-3227.
-
(2004)
Hum. Mol. Genet.
, vol.13
, pp. 3219-3227
-
-
Tyynismaa, H.1
Sembongi, H.2
Bokori-Brown, M.3
Granycome, C.4
Ashley, N.5
Poulton, J.6
Jalanko, A.7
Spelbrink, J.N.8
Holt, I.J.9
Suomalainen, A.10
-
34
-
-
0037126059
-
Dual localization of human DNA topoisomerase IIIalpha to mitochondria and nucleus
-
Wang, Y., Y. L. Lyu, and J. C. Wang. 2002. Dual localization of human DNA topoisomerase IIIalpha to mitochondria and nucleus. Proc. Natl. Acad. Sci. U. S. A. 99:12114-12119.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 12114-12119
-
-
Wang, Y.1
Lyu, Y.L.2
Wang, J.C.3
-
35
-
-
59149083659
-
Loss-of-function mutations of an inhibitory upstream ORF in the human hairless transcript cause Marie Unna hereditary hypotrichosis
-
Wen, Y., Y. Liu, Y. Xu, Y. Zhao, R. Hua, K. Wang, M. Sun, Y. Li, S. Yang, X. J. Zhang, R. Kruse, S. Cichon, R. C. Betz, M. M. Nothen, M. A. van Steensel, M. van Geel, P. M. Steijlen, D. Hohl, M. Huber, G. S. Dunnill, C. Kennedy, A. Messenger, C. S. Munro, A. Terrinoni, A. Hovnanian, C. Bodemer, Y. de Prost, A. S. Paller, A. D. Irvine, R. Sinclair, J. Green, D. Shang, Q. Liu, Y. Luo, L. Jiang, H. D. Chen, W. H. Lo, W. H. McLean, C. D. He, and X. Zhang. 2009. Loss-of-function mutations of an inhibitory upstream ORF in the human hairless transcript cause Marie Unna hereditary hypotrichosis. Nat. Genet. 41:228-233.
-
(2009)
Nat. Genet.
, vol.41
, pp. 228-233
-
-
Wen, Y.1
Liu, Y.2
Xu, Y.3
Zhao, Y.4
Hua, R.5
Wang, K.6
Sun, M.7
Li, Y.8
Yang, S.9
Zhang, X.J.10
Kruse, R.11
Cichon, S.12
Betz, R.C.13
Nothen, M.M.14
Van Steensel, M.A.15
Van Geel, M.16
Steijlen, P.M.17
Hohl, D.18
Huber, M.19
Dunnill, G.S.20
Kennedy, C.21
Messenger, A.22
Munro, C.S.23
Terrinoni, A.24
Hovnanian, A.25
Bodemer, C.26
De Prost, Y.27
Paller, A.S.28
Irvine, A.D.29
Sinclair, R.30
Green, J.31
Shang, D.32
Liu, Q.33
Luo, Y.34
Jiang, L.35
Chen, H.D.36
Lo, W.H.37
McLean, W.H.38
He, C.D.39
Zhang, X.40
more..
-
37
-
-
33751088000
-
Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand
-
Yasukawa, T., A. Reyes, T. J. Cluett, M. Y. Yang, M. Bowmaker, H. T. Jacobs, and I. J. Holt. 2006. Replication of vertebrate mitochondrial DNA entails transient ribonucleotide incorporation throughout the lagging strand. EMBO J. 25:5358-5371.
-
(2006)
EMBO J.
, vol.25
, pp. 5358-5371
-
-
Yasukawa, T.1
Reyes, A.2
Cluett, T.J.3
Yang, M.Y.4
Bowmaker, M.5
Jacobs, H.T.6
Holt, I.J.7
|