Kinetics of quasi-isoenergetic transition processes in biological macromolecules

Chemical Physics

Volumn 375, Issue 2-3, 2010, Pages 243-251

  Petrov, E G ^a   Teslenko, V I ^a  

^a BOGOLYUBOV INSTITUTE FOR THEORETICAL PHYSICS   (Ukraine)

Author keywords

Averaged rate constants; Master equation; Stochastic field; Transitions

Indexed keywords

EID: 77957749925     PISSN: 03010104     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chemphys.2010.05.029     Document Type: Article

References (63)

1. M. Oliveberg, Y.-J. Tan, and A.R. Fersht Proc. Natl. Acad. Sci. USA 92 1995 8926
2. M.L. Scalley, and D. Baker Proc. Natl. Acad. Sci. USA 94 1997 10636
3. J. Chahine, R.J. Oliveira, V.B.P. Leite, and J. Wang Proc. Natl. Acad. Sci. USA 104 2007 14646
4. C. Zong, C.J. Wilson, T. Shen, P. Wittung-Stafshede, S.L. Mayo, and P.G. Wolynes Proc. Natl. Acad. Sci. USA 104 2007 3159
5. H. Sabbah, L. Biennier, J.R. Sims, Yu. Georgievskii, S.J. Klippenstein, and I.W.M. Smith Science 317 2007 102
6. S.K. Chamorovsky, A.A. Kononenko, S.M. Remennikov, and A.B. Rubin Biochim. Biophys. Acta 586 1980 151
7. A. Warshel, Z.T. Chu, and W.W. Parson Science 246 1989 112
8. G. Feher Photosynth. Res. 55 1998 1
9. J. Jortner J. Chem. Phys. 64 1976 4860
10. J. Jortner Biochim. Biophys. Acta 593 1980 193
11. R. Marcus Annu. Rev. Phys. Chem. 15 1964 155
12. S.K. Chamorovsky, A.A. Kononenko, E.G. Petrov, I.I. Pottosin, and A.B. Rubin Biochim. Biophys. Acta 848 1986 402
13. S. Hammes-Schiffer Acc. Chem. Res. 34 2001 273
14. E.G. Petrov, V.I. Teslenko, and V. May Phys. Rev. E 68 2003 061916
15. A. Fernandez-Ramos, J.A. Miller, S.J. Klippenstein, and D. Truhlar Chem. Rev. 106 2006 4518
16. X. Ye, D. Ionascu, F. Gruia, A. Yu, A. Benabbas, and P.M. Champion Proc. Natl. Acad. Sci. USA 104 2007 14682
17. M.I. Wallace, L. Ying, S. Balasubramanian, and D. Klenerman Proc. Natl. Acad. Sci. USA 98 2001 5584
18. S.V. Kuznetsov, Cha-Chi Ren, S.A. Woodson, and A. Ansari Nucleic Acids Res. 36 2008 1098
19. V. Khmyz, O. Maximyuk, V. Teslenko, A. Verkhratsky, and O. Krishtal Pflugers Arch. Eur. J. Physiol. 456 2008 339
20. Ya. Isojima, M. Nakajima, and H. Fujishuma Proc. Natl. Acad. Sci. USA 106 2009 15744
21. R.A. Frisner Proc. Natl. Acad. Sci. USA 102 2005 6648
22. L.N. Doltsinis, and D. Marx J. Theor. Comp. Chem. 1 2002 319
23. S. Datta Electronic Transport in Mesoscopic Systems 1995 University Press Cambridge
24. E.G. Petrov Chem. Phys. 326 2006 151
25. E.G. Petrov, V. May, and P. Hänggi Chem. Phys. 319 2005 380
26. M. Karplus, and J. Kuriyan Proc. Natl. Acad. Sci. USA 102 2005 6679
27. H. Van Amerongen, L. Valkunas, and R. Van Grondelle Photosynthetic Excitons 2000 World Scientific Singapore
28. E.G. Petrov Physics of Charge Transfer in Biological Systems 1984 Naukowa Dumka Kiev (in Russian)
29. V. May, and O. Kühn Charge and Energy Transfer Dynamics in Molecular Systems second ed. 2004 Wiley-VCH Weinheim
30. E.G. Petrov, I.A. Goychuk, and V. May Physica A 233 1996 560
31. I.A. Goychuk, E.G. Petrov, and V. May Phys. Rev. E 56 1997 1421
32. I. Goychuk, and P. Hänggi Adv. Phys. 54 2005 525
33. E.G. Petrov, and V.I. Teslenko Theor. Math. Phys. 84 1991 986
34. E.G. Petrov, V.I. Teslenko, and I.A. Goychuk Phys. Rev. E 49 1994 3894
35. E.G. Petrov Phys. Rev. E 57 1998 94
36. V.E. Shapiro, and M.N. Loginov Physica A 91 1978 563
37. M.D. Fayer Annu. Rev. Phys. Chem. 52 2001 315
38. H.P. Lu, L. Xun, and X.S. Xie Science 282 1998 1877
39. H. Yang, G. Luo, P. Karnchanaphanurach, T.-M. Louie, I. Rech, S. Cova, L. Xun, and X.S. Xie Science 302 2003 262
40. L. Valkunas, J. Janusonis, D. Ruthkauskas, and R. van Grondelle J. Lumin. 127 2007 269
41. J. Janusonis, L.V. Valkunas, D. Rutkauskas, and R. van Grondelle Biophys. J. 94 2008 1348
42. T. Holstein Ann. Phys. 8 1959 343
43. M. Wagner Unitary Transformations in Solid State Physics 1986 North-Holland Amsterdam
44. S.H. Lin, R. Alden, R. Islampur, H. Ma, and A.A. Villaeys Density Matrix Method and Femtosecond Processes 1991 World Science Singapore
45. I.A. Goychuk, E.G. Petrov, and V. May Phys. Rev. E 52 1995 2392
46. E.G. Petrov, V. May, and P. Hänggi Chem. Phys. 296 2004 251
47. A.O. Caldeira, and A.J. Leggett Ann. Phys. (New York) 148 1983 374
48. A.J. Leggett, S. Chakravarty, A. Dorsey, M.P.A. Fisher, A. Garg, and W. Zwerger Rev. Mod. Phys. 59 1987 1
49. M. Grifoni, and P. Hänggi Phys. Rep. 304 1998 229
50. U. Weiss Quantum Dissipative Systems second ed. 1998 World Scientific Singapore
51. The form of interaction V is dictated by a concrete transition process. In our case, operator V refers to the "coated" off-diagonal interaction responsible for the transitions between the molecular states, cf. Eq. (5).
52. A.I. Akhiezer, and S.V. Peletminskii Methods of Statistical Physics 1981 Pergamon Press Oxford
53. A. Brissaud, and U. Frish J. Math. Phys. 15 1974 524
54. R. Kubo J. Phys. Soc. Jpn. 9 1954 935
55. P.W. Anderson J. Phys. Soc. Jpn. 9 1954 316
56. T.L. Hill Statistical Mechanics 1956 McGraw-Hill NY
57. X. Song, and R.A. Marcus J. Chem. Phys. 99 1993 7768
58. S. Tanaka, and C.-P. Hsu J. Chem. Phys. 111 1999 117
59. B.S. Khakh Nat. Rev. Neurosci. 2 2001 165
60. H.J. Bakker, S. Wountersen, and H.-K. Nienhuys Chem. Phys. 258 2000 233
61. P.F. Taday Philos. Trans. Roy. Soc. Lond. A 362 2004 351
62. 2.
63. S.M. Reppert, and D.R. Weaver Nature 418 2002 935