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Volumn 3, Issue , 2010, Pages

Comparative analysis of four methods to extract DNA from paraffin-embedded tissues: Effect on downstream molecular applications

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EID: 77957744517     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-3-239     Document Type: Article
Times cited : (83)

References (43)
  • 1
    • 0023932094 scopus 로고
    • Detection of human papillomavirus in paraffin-embedded tissue using the polymerase chain reaction
    • 10.1084/jem.167.1.225. 2826637
    • Detection of human papillomavirus in paraffin-embedded tissue using the polymerase chain reaction. DK Shibata N Arnheim WJ Martin, J Exp Med 1988 167 225 230 10.1084/jem.167.1.225 2826637
    • (1988) J Exp Med , vol.167 , pp. 225-230
    • Shibata, D.K.1    Arnheim, N.2    Martin, W.J.3
  • 2
    • 0025353722 scopus 로고
    • Detection and typing of papillomavirus DNA in formalin-fixed, paraffin-embedded tissue
    • Detection and typing of papillomavirus DNA in formalin-fixed, paraffin-embedded tissue. J Brandsma AJ Lewis AL Abramson MM Manos, Arch Otolaryngal 1990 116 844 848
    • (1990) Arch Otolaryngal , vol.116 , pp. 844-848
    • Brandsma, J.1    Lewis, A.J.2    Abramson, A.L.3    Manos, M.M.4
  • 3
    • 0024600750 scopus 로고
    • Rapid detection of cutaneous herpes simplex virus infection with the polymerase chain reaction
    • DOI 10.1111/1523-1747.ep12277232
    • Rapid detection of cutaneous herpes simplex virus infection with the polymerase chain reaction. M Cao X Xiao B Egbert TM Darragh TSB Yen, J Invest Dermatol 1989 82 391 392 10.1111/1523-1747.ep12277232 (Pubitemid 19079787)
    • (1989) Journal of Investigative Dermatology , vol.92 , Issue.3
    • Cao, M.1    Xiao, X.2    Egbert, B.3    Darragh, T.M.4    Yen, T.S.B.5
  • 4
    • 0031897324 scopus 로고    scopus 로고
    • Detection of Human Papillomavirus in Archival Tissues: Comparison of in Situ Hybridization and Polymerase Chain Reaction
    • 9524200
    • Detection of Human Papillomavirus in Archival Tissues: Comparison of In Situ Hybridization and Polymerase Chain Reaction. ER Unger SD Vernon DR Lee DL Miller WC Reeves, J Histochem Cytochem 1998 46 535 540 9524200
    • (1998) J Histochem Cytochem , vol.46 , pp. 535-540
    • Unger, E.R.1    Vernon, S.D.2    Lee, D.R.3    Miller, D.L.4    Reeves, W.C.5
  • 5
    • 3843071044 scopus 로고    scopus 로고
    • Comparison of real-time PCR signal-amplified in situ hybridization and conventional PCR for detection and quantification of human papillomavirus in archival cervical cancer tissue
    • 10.1128/JCM.42.8.3758-3765.2004. 15297527
    • Comparison of real-time PCR signal-amplified in situ hybridization and conventional PCR for detection and quantification of human papillomavirus in archival cervical cancer tissue. EA Staudach O Dietze C Hauser-Kronberger, J Clin Microbiol 2004 42 3758 3765 10.1128/JCM.42.8.3758-3765.2004 15297527
    • (2004) J Clin Microbiol , vol.42 , pp. 3758-3765
    • Staudach, E.A.1    Dietze, O.2    Hauser-Kronberger, C.3
  • 6
    • 4344701102 scopus 로고    scopus 로고
    • Detection of Mycobacterium tuberculosis complex in formalin-fixed, paraffin-embedded tissue specimens with necrotizing granulomatous inflammation by strand displacement amplification
    • 15269300
    • Detection of Mycobacterium tuberculosis complex in formalin-fixed, paraffin-embedded tissue specimens with necrotizing granulomatous inflammation by strand displacement amplification. IS Johansen A Thomsen V Forsgren BF Hansen B Lundgren, J Mol Diagn 2004 6 231 236 15269300
    • (2004) J Mol Diagn , vol.6 , pp. 231-236
    • Johansen, I.S.1    Thomsen Forsgren, V.A.2    Hansen, B.F.3    Lundgren, B.4
  • 7
    • 34548293349 scopus 로고    scopus 로고
    • Use of the real-time PCR assay in conjunction with MagNA Pure for the detection of mycobacterial DNA from fixed specimens
    • 10.1097/PDM.0b013e318037552e. 17721325
    • Use of the real-time PCR assay in conjunction with MagNA Pure for the detection of mycobacterial DNA from fixed specimens. SH Beqaj R Flesher GR Walker SA Smith, Diagn Mol Pathol 2007 16 169 173 10.1097/PDM.0b013e318037552e 17721325
    • (2007) Diagn Mol Pathol , vol.16 , pp. 169-173
    • Beqaj, S.H.1    Flesher, R.2    Walker, G.R.3    Smith, S.A.4
  • 8
    • 0024573648 scopus 로고
    • Analysis of c-Ki-ras mutations in human colon carcinoma by cell sorting, polymerase chain reaction, and DNA sequencing
    • 2649235
    • Analysis of c-Ki-ras mutations in human colon carcinoma by cell sorting, polymerase chain reaction, and DNA sequencing. GC Burmer PS Rabinovitch LA Loeb, Cancer Res 1989 49 2141 2146 2649235
    • (1989) Cancer Res , vol.49 , pp. 2141-2146
    • Burmer, G.C.1    Rabinovitch, P.S.2    Loeb, L.A.3
  • 11
    • 0027314411 scopus 로고
    • Microsatellite instability in cancer of the proximal colon
    • 10.1126/science.8484122. 8484122
    • Microsatellite instability in cancer of the proximal colon. SN Thibodeau G Bren D Schaid, Science 1993 260 816 819 10.1126/science.8484122 8484122
    • (1993) Science , vol.260 , pp. 816-819
    • Thibodeau, S.N.1    Bren, G.2    Schaid, D.3
  • 12
  • 14
    • 0035710433 scopus 로고    scopus 로고
    • Real-time PCR analysis of DNA and RNA extracted from formalin-fixed and paraffin-embedded biopsies
    • 10.1006/meth.2001.1263. 11846610
    • Real-time PCR analysis of DNA and RNA extracted from formalin-fixed and paraffin-embedded biopsies. U Lehmann H Kreipe, Methods 2001 25 409 418 10.1006/meth.2001.1263 11846610
    • (2001) Methods , vol.25 , pp. 409-418
    • Lehmann, U.1    Kreipe, H.2
  • 15
    • 0023796582 scopus 로고
    • Rapid microwave fixation - A comparative morphometric study
    • 10.1007/BF01002728. 3065304
    • Rapid microwave fixation - a comparative morphometric study. K Kayser H Stute J Lübcke U Wazinski, Histochem J 1988 20 347 352 10.1007/BF01002728 3065304
    • (1988) Histochem J , vol.20 , pp. 347-352
    • Kayser, K.1    Stute, H.2    Lübcke, J.3    Wazinski, U.4
  • 17
    • 77951631386 scopus 로고    scopus 로고
    • The Isolation of Nucleic Acids from Fixed, Paraffin -Embedded Tissues- Which Methods Are Useful When?
    • 10.1371/journal.pone.0000537. 17579711
    • The Isolation of Nucleic Acids from Fixed, Paraffin -Embedded Tissues- Which Methods Are Useful When? MTP Gilbert T Haselkorn M Bunce JJ Sanchez SB Lucas LD Jewell E Van Marck M Worobey, PLoS One 2007 2 537 10.1371/journal.pone. 0000537 17579711
    • (2007) PLoS One , vol.2 , pp. 5537
    • Gilbert, M.T.P.1    Haselkorn, T.2    Bunce, M.3    Sanchez, J.J.4    Lucas, S.B.5    Jewell, L.D.6    Van Marck, E.7    Worobey, M.8
  • 18
    • 2942652786 scopus 로고    scopus 로고
    • In vitro artifacts after formalin fixation and error prone translesion synthesis during PCR
    • 10.1186/1472-6750-4-1. 14709179
    • In vitro artifacts after formalin fixation and error prone translesion synthesis during PCR. N Quach M Goodman D Shibata, BMC Biotechnology 2004 4 1 10.1186/1472-6750-4-1 14709179
    • (2004) BMC Biotechnology , vol.4 , pp. 1
    • Quach, N.1    Goodman, M.2    Shibata, D.3
  • 19
    • 0037633991 scopus 로고    scopus 로고
    • PCR analysis in archival postmortem tissues
    • 10.1136/mp.56.3.184. 12782767
    • PCR analysis in archival postmortem tissues. S Bonin F Petrera B Niccolini G Stanta, Mol Pathol 2003 56 184 186 10.1136/mp.56.3.184 12782767
    • (2003) Mol Pathol , vol.56 , pp. 184-186
    • Bonin, S.1    Petrera, F.2    Niccolini, B.3    Stanta, G.4
  • 20
    • 34547814653 scopus 로고    scopus 로고
    • Evaluation of DNA Extraction Methods and Real Time PCR Optimization on Formalin-fixed Paraffin-embedded Tissues
    • Evaluation of DNA Extraction Methods and Real Time PCR Optimization on Formalin-fixed Paraffin-embedded Tissues. P Dedhia S Tarale G Dhongde R Khadapkar B Das, Asian Pacific J Cancer Prev 2007 8 55 59
    • (2007) Asian Pacific J Cancer Prev , vol.8 , pp. 55-59
    • Dedhia, P.1    Tarale, S.2    Dhongde, G.3    Khadapkar, R.4    Das, B.5
  • 21
    • 0242573394 scopus 로고    scopus 로고
    • Comparison of methods for DNA extraction from paraffin-embedded tissues and buccal cells
    • 10.1016/S0361-090X(03)00103-X. 14585327
    • Comparison of methods for DNA extraction from paraffin-embedded tissues and buccal cells. W Cao M Hashibe JY Rao H Morgenstern ZF Zhang, Cancer Detect Prev 2003 27 397 404 10.1016/S0361-090X(03)00103-X 14585327
    • (2003) Cancer Detect Prev , vol.27 , pp. 397-404
    • Cao, W.1    Hashibe, M.2    Rao, J.Y.3    Morgenstern, H.4    Zhang, Z.F.5
  • 22
    • 0034999609 scopus 로고    scopus 로고
    • Evaluation of extraction methods from paraffin wax embedded tissues for PCR amplification of human and viral DNA
    • 10.1136/jcp.54.5.401. 11328843
    • Evaluation of extraction methods from paraffin wax embedded tissues for PCR amplification of human and viral DNA. PK Chan DP Chan KF To MY Yu JL Cheung AF Cheng, J Clin Pathol 2001 54 401 403 10.1136/jcp.54.5.401 11328843
    • (2001) J Clin Pathol , vol.54 , pp. 401-403
    • Chan, P.K.1    Chan, D.P.2    To, K.F.3    Yu, M.Y.4    Cheung, J.L.5    Cheng, A.F.6
  • 23
    • 33745044404 scopus 로고    scopus 로고
    • Simple salting-out method for DNA extraction from formalin-fixed, paraffin-embedded tissues
    • 10.1016/j.prp.2006.02.007. 16723190
    • Simple salting-out method for DNA extraction from formalin-fixed, paraffin-embedded tissues. ER Rivero AC Neves MG Silva-Valenzuela SO Sousa FD Nunes, Pathol Res Pract 2006 202 523 529 10.1016/j.prp.2006.02.007 16723190
    • (2006) Pathol Res Pract , vol.202 , pp. 523-529
    • Rivero, E.R.1    Neves, A.C.2    Silva-Valenzuela, M.G.3    Sousa, S.O.4    Nunes, F.D.5
  • 24
    • 0036733698 scopus 로고    scopus 로고
    • Extraction and Amplification of DNA from Formalin-Fixed, Paraffin-Embedded Tissues
    • 10.1097/00022744-200209000-00015. 12373156
    • Extraction and Amplification of DNA From Formalin-Fixed, Paraffin-Embedded Tissues. L Wu N Patten CT Yamashiro B Chui, Appl Immunohistochem Mol Morphol 2002 10 269 274 10.1097/00022744-200209000-00015 12373156
    • (2002) Appl Immunohistochem Mol Morphol , vol.10 , pp. 269-274
    • Wu, L.1    Patten, N.2    Yamashiro, C.T.3    Chui, B.4
  • 25
    • 0037316551 scopus 로고    scopus 로고
    • Diagnosing herpesvirus infections by real-time amplification and rapid culture
    • 10.1128/JCM.41.2.576-580.2003. 12574249
    • Diagnosing herpesvirus infections by real-time amplification and rapid culture. GJ van Doornum J Guldemeester AD Osterhaus HG Niesters, J Clin Microbiol 2003 41 576 580 10.1128/JCM.41.2.576-580.2003 12574249
    • (2003) J Clin Microbiol , vol.41 , pp. 576-580
    • Van Doornum, G.J.1    Guldemeester, J.2    Osterhaus, A.D.3    Niesters, H.G.4
  • 26
    • 0347723809 scopus 로고    scopus 로고
    • Impact of DNA Polymerases and Their Buffer Systems on Quantitative Real-Time PCR
    • 10.1128/JCM.42.1.408-411.2004. 14715792
    • Impact of DNA Polymerases and Their Buffer Systems on Quantitative Real-Time PCR. P Wolffs H Grage O Hagberg P Rådström, J Clin Microbiol 2004 42 408 411 10.1128/JCM.42.1.408-411.2004 14715792
    • (2004) J Clin Microbiol , vol.42 , pp. 408-411
    • Wolffs, P.1    Grage, H.2    Hagberg, O.3    Rådström, P.4
  • 27
    • 40049086211 scopus 로고    scopus 로고
    • Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials
    • 10.1186/1472-6750-8-10. 18254955
    • Improved RNA quality and TaqMan Pre-amplification method (PreAmp) to enhance expression analysis from formalin fixed paraffin embedded (FFPE) materials. J Li P Smyth S Cahill K Denning R Flavin S Aherne M Pirotta SM Guenther JJ O'Leary O Sheils, BMC Biotechnol 2008 8 10 10.1186/1472-6750-8-10 18254955
    • (2008) BMC Biotechnol , vol.8 , pp. 10
    • Li, J.1    Smyth, P.2    Cahill, S.3    Denning, K.4    Flavin, R.5    Aherne, S.6    Pirotta, M.7    Guenther, S.M.8    O'Leary, J.J.9    Sheils, O.10
  • 28
    • 0033887434 scopus 로고    scopus 로고
    • Colorimetric microwell plate detection of the factor v Leidenmutation
    • 10926905
    • Colorimetric microwell plate detection of the factor V Leidenmutation. A Kowalski D Radu B Gold, Clin Chem 2000 46 1195 1198 10926905
    • (2000) Clin Chem , vol.46 , pp. 1195-1198
    • Kowalski, A.1    Radu, D.2    Gold, B.3
  • 29
    • 0033770851 scopus 로고    scopus 로고
    • Comparison of six commercial DNA extraction kits for recovery of cytomegalovirus DNA from spiked human specimens
    • 11015421
    • Comparison of six commercial DNA extraction kits for recovery of cytomegalovirus DNA from spiked human specimens. GA Fahle SH Fischer, J Clin Microbiol 2000 38 3860 3863 11015421
    • (2000) J Clin Microbiol , vol.38 , pp. 3860-3863
    • Fahle, G.A.1    Fischer, S.H.2
  • 31
    • 34548596676 scopus 로고    scopus 로고
    • Molecular analysis in a patient with severe factor VII deficiency and an inhibitor: Report of a novel mutation (S103G)
    • DOI 10.1111/j.1600-0609.2007.00916.x
    • Molecular analysis in a patient with severe factor VII deficiency and an inhibitor: report of a novel mutation (S103G). RK Pruthi V Rodriguez C Allen JA Slaby KA Schmidt EA Plumhoff, European Eur J Haematol 2007 79 354 359 10.1111/j.1600-0609.2007.00916.x (Pubitemid 47390129)
    • (2007) European Journal of Haematology , vol.79 , Issue.4 , pp. 354-359
    • Pruthi, R.K.1    Rodriguez, V.2    Allen, C.3    Slaby, J.A.4    Schmidt, K.A.5    Plumhoff, E.A.6
  • 35
    • 0028143269 scopus 로고
    • Analysis of changes in DNA sequence copy number by comparative genomic hybridization in archival paraffin-embedded tumor samples
    • Analysis of changes in DNA sequence copy number by comparative genomic hybridization in archival paraffin-embedded tumor samples. J Isola S DeVries L Chu S Ghazvini F Waldman, Am J Pathol 1994 145 1301 1308 7992835 (Pubitemid 24378485)
    • (1994) American Journal of Pathology , vol.145 , Issue.6 , pp. 1301-1308
    • Isola, J.1    DeVries, S.2    Chu, L.3    Ghazvini, S.4    Waldman, F.5
  • 37
    • 34447506198 scopus 로고    scopus 로고
    • Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snapfrozen cells
    • 10.1186/1472-6750-7-36. 17603869
    • Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snapfrozen cells. J Li P Smyth R Flavin S Cahill K Denning S Aherne SM Guenther JJ O'Leary O Sheils, BMC Biotechnol 2007 7 36 10.1186/1472-6750-7-36 17603869
    • (2007) BMC Biotechnol , vol.7 , pp. 36
    • Li, J.1    Smyth, P.2    Flavin, R.3    Cahill, S.4    Denning, K.5    Aherne, S.6    Guenther, S.M.7    O'Leary, J.J.8    Sheils, O.9
  • 38
    • 0034990151 scopus 로고    scopus 로고
    • Validation of short tandem repeats (STRs) for forensic usage: Performance testing of fluorescent multiplex STR systems and analysis of authentic and simulated forensic samples
    • 11373004
    • Validation of short tandem repeats (STRs) for forensic usage: performance testing of fluorescent multiplex STR systems and analysis of authentic and simulated forensic samples. TR Moretti AL Baumstark DA Defenbaugh KM Keys JB Smerick B Budowle, J Forensic Sci 2001 46 647 660 11373004
    • (2001) J Forensic Sci , vol.46 , pp. 647-660
    • Moretti, T.R.1    Baumstark, A.L.2    Defenbaugh, D.A.3    Keys, K.M.4    Smerick, J.B.5    Budowle, B.6
  • 40
    • 0032580255 scopus 로고    scopus 로고
    • PCR-based apolipoprotein e genotype analysis from archival fixed brain
    • 10.1016/S0165-0270(98)00002-8. 9667394
    • PCR-based apolipoprotein E genotype analysis from archival fixed brain. L Gioia LJ Vogt WM Freeman A Flood BA Vogt KE Vrana, J Neurosci Methods 1998 80 209 214.39 10.1016/S0165-0270(98)00002-8 9667394
    • (1998) J Neurosci Methods , vol.80 , pp. 209-21439
    • Gioia, L.1    Vogt, L.J.2    Freeman, W.M.3    Flood, A.4    Vogt, B.A.5    Vrana, K.E.6
  • 41
    • 44049097767 scopus 로고    scopus 로고
    • Preparation of DNA from fixed, paraffin-embedded tissue
    • 18428225
    • Preparation of DNA from fixed, paraffin-embedded tissue. EA Fox, Curr Protoc Hum Genet 2001 18428225
    • (2001) Curr Protoc Hum Genet
    • Fox, E.A.1
  • 42
    • 70349245592 scopus 로고    scopus 로고
    • A B-cell lymphoma diagnosed in "floater" tissue: Implications of the diagnosis and resolution of a laboratory error
    • 10.1097/MAJ.0b013e3181a88dc0. 19745614
    • A B-cell lymphoma diagnosed in "floater" tissue: implications of the diagnosis and resolution of a laboratory error. CA Mosse JR Stumph DH Best CL Vnencak-Jones, Am J Med Sci 2009 338 248 251 10.1097/MAJ. 0b013e3181a88dc0 19745614
    • (2009) Am J Med Sci , vol.338 , pp. 248-251
    • Mosse, C.A.1    Stumph, J.R.2    Best, D.H.3    Vnencak-Jones, C.L.4
  • 43
    • 34247851057 scopus 로고    scopus 로고
    • Single nucleotide polymorphism profiling assay to confirm the identity of human tissues
    • DOI 10.2353/jmoldx.2007.060059
    • Single nucleotide polymorphism profiling assay to confirm the identity of human tissues. R Huijsmans J Damen H van der Linden M Hermans, J Mol Diagn 2007 9 205 213 10.2353/jmoldx.2007.060059 17384212 (Pubitemid 47305087)
    • (2007) Journal of Molecular Diagnostics , vol.9 , Issue.2 , pp. 205-213
    • Huijsmans, R.1    Damen, J.2    Van Der Linden, H.3    Hermans, M.H.A.4


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