메뉴 건너뛰기




Volumn 8, Issue 1, 2007, Pages 55-59

Evaluation of DNA extraction methods and real time PCR optimization on formalin-fixed paraffin-embedded tissues

Author keywords

Heat treatment; Protocol optimization; Real time PCR

Indexed keywords

DNA; FIXATIVE; FORMALDEHYDE; PARAFFIN; PRIMER DNA;

EID: 34547814653     PISSN: 15137368     EISSN: 2476762X     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (70)

References (17)
  • 1
    • 0036320413 scopus 로고    scopus 로고
    • Real-time PCR technology for cancer diagnostics
    • Bernard P, Wittwer C (2002). Real-time PCR technology for cancer diagnostics. Clin Chem, 48, 1178-85.
    • (2002) Clin Chem , vol.48 , pp. 1178-1185
    • Bernard, P.1    Wittwer, C.2
  • 2
    • 0037633991 scopus 로고    scopus 로고
    • PCR analysis in archival postmortem tissues
    • Bonin S, Petrera F, Niccolini B, et al. (2003). PCR analysis in archival postmortem tissues. Mol Pathol, 56, 184-6.
    • (2003) Mol Pathol , vol.56 , pp. 184-186
    • Bonin, S.1    Petrera, F.2    Niccolini, B.3
  • 3
    • 14044265394 scopus 로고    scopus 로고
    • Pitfalls of Quantitative Real-Time Reverse-Transcription Polymerase Chain Reaction
    • Bustina S, Nolanb T (2004). Pitfalls of Quantitative Real-Time Reverse-Transcription Polymerase Chain Reaction. J Biomolecular Techniques, 15, 155-66.
    • (2004) J Biomolecular Techniques , vol.15 , pp. 155-166
    • Bustina, S.1    Nolanb, T.2
  • 4
    • 1142263115 scopus 로고    scopus 로고
    • Real-time quantitative PCR of microdissected paraffin-embedded breast carcinoma - an alternative method for HER-2/neu Analysis
    • Gjerdrum LM, Sorensen BS, Kjeldsen E, et al. (2004). Real-time quantitative PCR of microdissected paraffin-embedded breast carcinoma - an alternative method for HER-2/neu Analysis. J Molec Diagnostics, 6, 1.
    • (2004) J Molec Diagnostics , vol.6 , pp. 1
    • Gjerdrum, L.M.1    Sorensen, B.S.2    Kjeldsen, E.3
  • 5
    • 0035710433 scopus 로고    scopus 로고
    • Real-time PCR analysis of DNA and RNA extracted from formalin-fixed and paraffinembedded biopsies
    • Lehmann U, Kreipe H (2001). Real-time PCR analysis of DNA and RNA extracted from formalin-fixed and paraffinembedded biopsies. Methods, 25, 409-18.
    • (2001) Methods , vol.25 , pp. 409-418
    • Lehmann, U.1    Kreipe, H.2
  • 6
    • 0035043217 scopus 로고    scopus 로고
    • Quantification of HER2/neu Gene Amplification by Competitive PCR Using Fluorescent Melting Curve Analysis
    • Lyon E, Millson A, Lowery M, et al. (2001). Quantification of HER2/neu Gene Amplification by Competitive PCR Using Fluorescent Melting Curve Analysis. Clin Chem, 47, 844- 51.
    • (2001) Clin Chem , vol.47 , pp. 844-851
    • Lyon, E.1    Millson, A.2    Lowery, M.3
  • 7
    • 20444501302 scopus 로고    scopus 로고
    • Detection and Identification of Mycobacterium Species by Polymerase Chain Reaction (PCR) from Paraffin-Embedded Tissue Compare to AFB Staining in Pathological Sections
    • Mahaisavariya P, Chaiprasert A, Manonukul J, et al. (2005). Detection and Identification of Mycobacterium Species by Polymerase Chain Reaction (PCR) from Paraffin-Embedded Tissue Compare to AFB Staining in Pathological Sections. J Med Assoc Thai, 88, 108-13.
    • (2005) J Med Assoc Thai , vol.88 , pp. 108-113
    • Mahaisavariya, P.1    Chaiprasert, A.2    Manonukul, J.3
  • 8
    • 18244409133 scopus 로고    scopus 로고
    • A multi-center study in order to further define the molecular basis of b-thalassemia in Thailand, Pakistan, Sri Lanka, Mauritius, Syria, and India, and to develop a simple molecular diagnostic strategy by amplification refratory mutation system-polymerase chain reaction
    • Old JM, Khan SN, Verma I, et al. (2001). A multi-center study in order to further define the molecular basis of b-thalassemia in Thailand, Pakistan, Sri Lanka, Mauritius, Syria, and India, and to develop a simple molecular diagnostic strategy by amplification refratory mutation system-polymerase chain reaction. Hemoglobin, 25, 397-407.
    • (2001) Hemoglobin , vol.25 , pp. 397-407
    • Old, J.M.1    Khan, S.N.2    Verma, I.3
  • 9
    • 0034999609 scopus 로고    scopus 로고
    • Evaluation of extraction methods from paraffin wax embedded tissues for PCR amplification of human and viral DNA
    • P K S Chan, D P C Chan, K-F To, et al. (2001). Evaluation of extraction methods from paraffin wax embedded tissues for PCR amplification of human and viral DNA. J Clin Pathol, 54, 401-3.
    • (2001) J Clin Pathol , vol.54 , pp. 401-403
    • Chan, P.K.S.1    Chan, D.P.C.2    To, K.-F.3
  • 10
    • 3042604472 scopus 로고    scopus 로고
    • Real-time PCR based on SYBR-Green I fluorescence: An alternative to the TaqMan assay for a relative quantification of gene rearrangements, gene amplifications and micro gene deletions
    • Ponchel F, Toomes C, Bransfield K, et al. (2003). Real-time PCR based on SYBR-Green I fluorescence: An alternative to the TaqMan assay for a relative quantification of gene rearrangements, gene amplifications and micro gene deletions. BMC Biotechnology, 3, 18.
    • (2003) BMC Biotechnology , vol.3 , pp. 18
    • Ponchel, F.1    Toomes, C.2    Bransfield, K.3
  • 11
    • 2942652786 scopus 로고    scopus 로고
    • In vitro artifacts after formalin fixation and error prone translesion synthesis during PCR
    • Quach N, Goodman M, Shibata D (2004). In vitro artifacts after formalin fixation and error prone translesion synthesis during PCR. BMC Clinical Pathology, 4, 1.
    • (2004) BMC Clinical Pathology , vol.4 , pp. 1
    • Quach, N.1    Goodman, M.2    Shibata, D.3
  • 12
    • 4444290097 scopus 로고    scopus 로고
    • Amplification of the BRCA2 Pathway Gene EMSY in sporadic breast cancer is related to negative outcome
    • Rodriguez C, Davies L, Valles H (2004). Amplification of the BRCA2 Pathway Gene EMSY in sporadic breast cancer is related to negative outcome. Clinical Cancer Research, 10, 5785-91.
    • (2004) Clinical Cancer Research , vol.10 , pp. 5785-5791
    • Rodriguez, C.1    Davies, L.2    Valles, H.3
  • 14
    • 29544450016 scopus 로고    scopus 로고
    • Mutations in the mitochondrial DNA D-loop region are frequent in cervical cancer
    • Sharma H, Singh A, Sharma C, et al. (2005). Mutations in the mitochondrial DNA D-loop region are frequent in cervical cancer. Cancer Cell Int, 5, 34.
    • (2005) Cancer Cell Int , vol.5 , pp. 34
    • Sharma, H.1    Singh, A.2    Sharma, C.3
  • 15
    • 0009838259 scopus 로고    scopus 로고
    • Improvements in the detection of Epstein-Barr virus DNA on paraffinembedded gastric carcinoma tissues: Treatment of extracted cellular DNA with a restriction enzyme prior to Polymerase Chain Reaction
    • Takasaka N, Satoh Y, Hoshikawa Y, et al. (1996). Improvements in the detection of Epstein-Barr virus DNA on paraffinembedded gastric carcinoma tissues: Treatment of extracted cellular DNA with a restriction enzyme prior to Polymerase Chain Reaction. Yonago Acta Medica, 39, 171-6.
    • (1996) Yonago Acta Medica , vol.39 , pp. 171-176
    • Takasaka, N.1    Satoh, Y.2    Hoshikawa, Y.3
  • 16
    • 0002653239 scopus 로고    scopus 로고
    • Amplification of PCR products in excess of 600 base pairs using DNA extracted from decalcified, paraffin wax embedded bone marrow trephine biopsies
    • Wickham C L, Boyce M, Joyner M V, et al. (2000). Amplification of PCR products in excess of 600 base pairs using DNA extracted from decalcified, paraffin wax embedded bone marrow trephine biopsies. J Clin Pathol: Mol Pathol, 53, 19-23.
    • (2000) J Clin Pathol: Mol Pathol , vol.53 , pp. 19-23
    • Wickham, C.L.1    Boyce, M.2    Joyner, M.V.3
  • 17
    • 2942694192 scopus 로고    scopus 로고
    • Involvement of viral and chemical factors with oral cancer in Taiwan
    • Yang Y, Koh LM, Tsai JH, et al. (2004). Involvement of viral and chemical factors with oral cancer in Taiwan. Jpn J Clin, 34, 176-83.
    • (2004) Jpn J Clin , vol.34 , pp. 176-183
    • Yang, Y.1    Koh, L.M.2    Tsai, J.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.