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Volumn 11, Issue SUPPL. 6, 2010, Pages

An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS CAPABILITIES; ANTIMICROBIAL RESISTANCES; FOOD AND DRUG ADMINISTRATION; FOOD-BORNE PATHOGENS; HIERARCHICAL CLUSTERING ANALYSIS; MOLECULAR CHARACTERIZATION; RESEARCH COMMUNITIES; UNITED STATES DEPARTMENT OF AGRICULTURES;

EID: 77957712728     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-11-4     Document Type: Article
Times cited : (31)

References (29)
  • 1
    • 34347356353 scopus 로고    scopus 로고
    • Foodborne Illness
    • CDC
    • CDC Foodborne Illness. CDC., http://www.cdc.gov/ncidod/dbmd/diseaseinfo/foodborneinfections_t.htm
  • 2
    • 78651316377 scopus 로고    scopus 로고
    • Health-related costs from foodborne illness in the United States.
    • Georgetown University, Washington, D.C.
    • Schraff RL. Health-related costs from foodborne illness in the United States. Produce Safety Project. 2010, Georgetown University, Washington, D.C.., http://www.producesafetyproject.org/admin/assets/files/Health-Related-Foodborne-Illness-Costs-Report.pdf-1.pdf
    • (2010) Produce Safety Project.
    • Schraff, R.L.1
  • 3
    • 84874655231 scopus 로고    scopus 로고
    • List of foodborne illness outbreaks in the United States
    • Outbreaks
    • Outbreaks List of foodborne illness outbreaks in the United States. Outbreaks., http://en.wikipedia.org/wiki/List_of_foodborne_illness_outbreaks_in_the_United_States
  • 4
    • 68649100921 scopus 로고    scopus 로고
    • Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens
    • 10.1016/j.meegid.2009.03.004, 19460308
    • Foley SL, Lynne AM, Nayak R. Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens. Infect Genet Evol 2009, 9(4):430-440. 10.1016/j.meegid.2009.03.004, 19460308.
    • (2009) Infect Genet Evol , vol.9 , Issue.4 , pp. 430-440
    • Foley, S.L.1    Lynne, A.M.2    Nayak, R.3
  • 6
    • 34047144947 scopus 로고    scopus 로고
    • Classification of neuroblastoma patients by published gene-expression markers reveals a low sensitivity for unfavorable courses of MYCN non-amplified disease
    • 10.1016/j.canlet.2006.10.016, 17126996
    • Oberthuer A, Warnat P, Kahlert Y, Westermann F, Spitz R, Brors B, Hero B, Eils R, Schwab M, Berthold F, et al. Classification of neuroblastoma patients by published gene-expression markers reveals a low sensitivity for unfavorable courses of MYCN non-amplified disease. Cancer Lett 2007, 250(2):250-267. 10.1016/j.canlet.2006.10.016, 17126996.
    • (2007) Cancer Lett , vol.250 , Issue.2 , pp. 250-267
    • Oberthuer, A.1    Warnat, P.2    Kahlert, Y.3    Westermann, F.4    Spitz, R.5    Brors, B.6    Hero, B.7    Eils, R.8    Schwab, M.9    Berthold, F.10
  • 8
    • 0041421151 scopus 로고    scopus 로고
    • Prediction of clinical drug efficacy by classification of drug-induced genomic expression profiles in vitro
    • 10.1073/pnas.1632587100, 170965, 12869696
    • Gunther EC, Stone DJ, Gerwien RW, Bento P, Heyes MP. Prediction of clinical drug efficacy by classification of drug-induced genomic expression profiles in vitro. Proc Natl Acad Sci U S A 2003, 100(16):9608-9613. 10.1073/pnas.1632587100, 170965, 12869696.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.16 , pp. 9608-9613
    • Gunther, E.C.1    Stone, D.J.2    Gerwien, R.W.3    Bento, P.4    Heyes, M.P.5
  • 10
    • 77949569493 scopus 로고    scopus 로고
    • Antibiotic resistance and its cost: is it possible to reverse resistance?
    • Andersson DI, Hughes D. Antibiotic resistance and its cost: is it possible to reverse resistance?. Nat Rev Microbiol 2010, 8(4):260-271.
    • (2010) Nat Rev Microbiol , vol.8 , Issue.4 , pp. 260-271
    • Andersson, D.I.1    Hughes, D.2
  • 11
    • 77949568092 scopus 로고    scopus 로고
    • Call of the wild: antibiotic resistance genes in natural environments
    • 10.1038/nrmicro2312, 20190823
    • Allen HK, Donato J, Wang HH, Cloud-Hansen KA, Davies J, Handelsman J. Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol 2010, 8(4):251-259. 10.1038/nrmicro2312, 20190823.
    • (2010) Nat Rev Microbiol , vol.8 , Issue.4 , pp. 251-259
    • Allen, H.K.1    Donato, J.2    Wang, H.H.3    Cloud-Hansen, K.A.4    Davies, J.5    Handelsman, J.6
  • 12
    • 68149131082 scopus 로고    scopus 로고
    • Pathogen detection in milk samples by ligation detection reaction-mediated universal array method
    • 10.3168/jds.2008-1773, 19528580
    • Cremonesi P, Pisoni G, Severgnini M, Consolandi C, Moroni P, Raschetti M, Castiglioni B. Pathogen detection in milk samples by ligation detection reaction-mediated universal array method. J Dairy Sci 2009, 92(7):3027-3039. 10.3168/jds.2008-1773, 19528580.
    • (2009) J Dairy Sci , vol.92 , Issue.7 , pp. 3027-3039
    • Cremonesi, P.1    Pisoni, G.2    Severgnini, M.3    Consolandi, C.4    Moroni, P.5    Raschetti, M.6    Castiglioni, B.7
  • 13
    • 0042922317 scopus 로고    scopus 로고
    • Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis
    • 10.1128/JCM.41.9.4071-4080.2003, 193862, 12958228
    • Volokhov D, Chizhikov V, Chumakov K, Rasooly A. Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J Clin Microbiol 2003, 41(9):4071-4080. 10.1128/JCM.41.9.4071-4080.2003, 193862, 12958228.
    • (2003) J Clin Microbiol , vol.41 , Issue.9 , pp. 4071-4080
    • Volokhov, D.1    Chizhikov, V.2    Chumakov, K.3    Rasooly, A.4
  • 15
    • 1842584271 scopus 로고    scopus 로고
    • DNA microarray technology in nutraceutical and food safety
    • 10.1016/j.toxlet.2003.08.009, 15068823
    • Liu-Stratton Y, Roy S, Sen CK. DNA microarray technology in nutraceutical and food safety. Toxicol Lett 2004, 150(1):29-42. 10.1016/j.toxlet.2003.08.009, 15068823.
    • (2004) Toxicol Lett , vol.150 , Issue.1 , pp. 29-42
    • Liu-Stratton, Y.1    Roy, S.2    Sen, C.K.3
  • 16
    • 0035408283 scopus 로고    scopus 로고
    • Microarray analysis of microbial virulence factors
    • 10.1128/AEM.67.7.3258-3263.2001, 93008, 11425749
    • Chizhikov V, Rasooly A, Chumakov K, Levy DD. Microarray analysis of microbial virulence factors. Appl Environ Microbiol 2001, 67(7):3258-3263. 10.1128/AEM.67.7.3258-3263.2001, 93008, 11425749.
    • (2001) Appl Environ Microbiol , vol.67 , Issue.7 , pp. 3258-3263
    • Chizhikov, V.1    Rasooly, A.2    Chumakov, K.3    Levy, D.D.4
  • 17
    • 7444239628 scopus 로고    scopus 로고
    • Multipathogen oligonucleotide microarray for environmental and biodefense applications
    • 10.1016/j.bios.2004.04.030, 15522583
    • Sergeev N, Distler M, Courtney S, Al-Khaldi SF, Volokhov D, Chizhikov V, Rasooly A. Multipathogen oligonucleotide microarray for environmental and biodefense applications. Biosens Bioelectron 2004, 20(4):684-698. 10.1016/j.bios.2004.04.030, 15522583.
    • (2004) Biosens Bioelectron , vol.20 , Issue.4 , pp. 684-698
    • Sergeev, N.1    Distler, M.2    Courtney, S.3    Al-Khaldi, S.F.4    Volokhov, D.5    Chizhikov, V.6    Rasooly, A.7
  • 18
  • 19
    • 34247180102 scopus 로고    scopus 로고
    • Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays
    • 10.1016/j.forsciint.2006.06.079, 16934953
    • Jackson SA, Mammel MK, Patel IR, Mays T, Albert TJ, LeClerc JE, Cebula TA. Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays. Forensic Sci Int 2007, 168(2-3):183-199. 10.1016/j.forsciint.2006.06.079, 16934953.
    • (2007) Forensic Sci Int , vol.168 , Issue.2-3 , pp. 183-199
    • Jackson, S.A.1    Mammel, M.K.2    Patel, I.R.3    Mays, T.4    Albert, T.J.5    LeClerc, J.E.6    Cebula, T.A.7
  • 20
    • 77957718632 scopus 로고    scopus 로고
    • Design, Validation and Application of a Novel and Comprehensive DNA Microarray for Genomic Interrogation of Escherichia coli and Shigella species
    • Submitted
    • Jackson S, Patel I. Design, Validation and Application of a Novel and Comprehensive DNA Microarray for Genomic Interrogation of Escherichia coli and Shigella species. BMC Genomics 2010, Submitted.
    • (2010) BMC Genomics
    • Jackson, S.1    Patel, I.2
  • 21
    • 84874654735 scopus 로고    scopus 로고
    • The Pathogen Functional Genomics Resource Center at the J. Craig Venter Institute (JCVI) announces a program to obtain the Affymetrix E. coli FDA-ECSG microarray
    • ECSG
    • ECSG The Pathogen Functional Genomics Resource Center at the J. Craig Venter Institute (JCVI) announces a program to obtain the Affymetrix E. coli FDA-ECSG microarray. 2009, ECSG., http://pfgrc.jcvi.org/index.php/home/full_news/current/2009_1_9.html
    • (2009)
  • 23
    • 77951974203 scopus 로고    scopus 로고
    • An oligonucleotide microarray to characterize multidrug resistant plasmids
    • 10.1016/j.mimet.2010.01.024, 20138094
    • Lindsey RL, Frye JG, Fedorka-Cray PJ, Welch TJ, Meinersmann RJ. An oligonucleotide microarray to characterize multidrug resistant plasmids. J Microbiol Methods 2010, 81:96-100. 10.1016/j.mimet.2010.01.024, 20138094.
    • (2010) J Microbiol Methods , vol.81 , pp. 96-100
    • Lindsey, R.L.1    Frye, J.G.2    Fedorka-Cray, P.J.3    Welch, T.J.4    Meinersmann, R.J.5
  • 24
    • 68849110417 scopus 로고    scopus 로고
    • Microarray analysis of antimicrobial resistance genes in Salmonella enterica from preharvest poultry environment
    • 10.1111/j.1365-2672.2009.04270.x, 19320942
    • Zou W, Frye JG, Chang CW, Liu J, Cerniglia CE, Nayak R. Microarray analysis of antimicrobial resistance genes in Salmonella enterica from preharvest poultry environment. J Appl Microbiol 2009, 107(3):906-914. 10.1111/j.1365-2672.2009.04270.x, 19320942.
    • (2009) J Appl Microbiol , vol.107 , Issue.3 , pp. 906-914
    • Zou, W.1    Frye, J.G.2    Chang, C.W.3    Liu, J.4    Cerniglia, C.E.5    Nayak, R.6
  • 25
    • 0346243568 scopus 로고    scopus 로고
    • ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research
    • 1241745, 14630514
    • Tong W, Cao X, Harris S, Sun H, Fang H, Fuscoe J, Harris A, Hong H, Xie Q, Perkins R, et al. ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research. Environ Health Perspect 2003, 111(15):1819-1826. 1241745, 14630514.
    • (2003) Environ Health Perspect , vol.111 , Issue.15 , pp. 1819-1826
    • Tong, W.1    Cao, X.2    Harris, S.3    Sun, H.4    Fang, H.5    Fuscoe, J.6    Harris, A.7    Hong, H.8    Xie, Q.9    Perkins, R.10
  • 26
    • 11144358192 scopus 로고    scopus 로고
    • Development of public toxicogenomics software for microarray data management and analysis
    • Tong W, Harris S, Cao X, Fang H, Shi L, Sun H, Fuscoe J, Harris A, Hong H, Xie Q, et al. Development of public toxicogenomics software for microarray data management and analysis. Mutat Res 2004, 549(1-2):241-253.
    • (2004) Mutat Res , vol.549 , Issue.1-2 , pp. 241-253
    • Tong, W.1    Harris, S.2    Cao, X.3    Fang, H.4    Shi, L.5    Sun, H.6    Fuscoe, J.7    Harris, A.8    Hong, H.9    Xie, Q.10
  • 28
    • 33947319282 scopus 로고    scopus 로고
    • GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data
    • 10.1186/1471-2105-7-S2-S23, 1683576, 17118145
    • Sun H, Fang H, Chen T, Perkins R, Tong W. GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data. BMC Bioinformatics 2006, 7(Suppl 2):S23. 10.1186/1471-2105-7-S2-S23, 1683576, 17118145.
    • (2006) BMC Bioinformatics , vol.7 , Issue.SUPPL. 2
    • Sun, H.1    Fang, H.2    Chen, T.3    Perkins, R.4    Tong, W.5
  • 29
    • 84874653653 scopus 로고    scopus 로고
    • The NIAID-Supported Pathogen Functional Genomics Resource Center at the J. Craig Venter Institute Offers New Affymetrix Array for Faster Identification of E. Coli and Shigella
    • Affymetrix_News
    • Affymetrix_News The NIAID-Supported Pathogen Functional Genomics Resource Center at the J. Craig Venter Institute Offers New Affymetrix Array for Faster Identification of E. Coli and Shigella. 2009, Affymetrix_News., http://phx.corporate-ir.net/preview/phoenix.zhtml?c=116408&p=irol-newsArticle&ID=1317038&highlight=ECSG
    • (2009)


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