Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis

Journal of Clinical Microbiology

Volumn 41, Issue 9, 2003, Pages 4071-4080

  Volokhov, Dmitriy ^a   Chizhikov, Vladimir ^a   Chumakov, Konstantin ^a   Rasooly, Avraham ^a  

^a CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ALLELE; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CAMPYLOBACTER UPSALIENSIS; CDTABC GENE; CEUB C GENE; DNA MICROARRAY; FLIY GENE; FUR GENE; GENE AMPLIFICATION; GLYA GENE; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; THERMOPHILIC BACTERIUM; UNITED STATES;

BASE SEQUENCE; CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER; CAMPYLOBACTER COLI; CAMPYLOBACTER JEJUNI; CAMPYLOBACTER LARI; CAMPYLOBACTER UPSALIENSIS; CHARADRII;

EID: 0042922317     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.41.9.4071-4080.2003     Document Type: Article

References (39)

1. Al Rashid, S. T., I. Dakuna, H. Louie, D. Ng, P. Vandamme, W. Johnson, and V. L. Chan. 2000. Identification of Campylobacter jejuni, C. coli, C. lari, C. upsaliensis, Arcobacter butzleri, and A. butzleri-like species based on the glyA gene. J. Clin. Microbiol. 38:1488-1494.
2. Allos, B. M. 2001. Campylobacter jejuni Infections: update on emerging issues and trends. Clin. Infect. Dis. 32:1201-1206.
3. Bang, D. D., F. Scheutz, P. Ahrens, K. Pedersen, J. Blom, and M. Madsen. 2001. Prevalence of cytolethal distending toxin (cdt) genes and CDT production in Campylobacter spp. isolated from Danish broilers. J. Med. Microbiol. 50:1087-1094.
4. Chizhikov, V., A. Rasooly, K. Chumakov, and D. D. Levy. 2001. Microarray analysis of microbial virulence factors. Appl. Environ. Microbiol. 67:3258-3263.
5. Chizhikov, V., M. Wagner, A. Ivshina, Y. Hoshino, A. Z. Kapikian, and K. Chumakov. 2002. Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization. J. Clin. Microbiol. 40:2398-2407.
6. Chuma, T., S. Hashimoto, and K. Okamoto. 2000. Detection of thermophilic Campylobacter from sparrows by multiplex PCR: the role of sparrows as a source of contamination of broilers with Campylobacter. J. Vet. Med. Sci. 62:1291-1295.
7. Chuma, T., K. Yano, H. Omori, K. Okamoto, and H. Yugi. 1997. Direct detection of Campylobacter jejuni in chicken cecal contents by PCR. J. Vet. Med. Sci. 59:85-87.
8. Cloak, O. M., and P. M. Fratamico. 2002. A multiplex polymerase chain reaction for the differentiation of Campylobacter jejuni and Campylobacter coli from a swine processing facility and characterization of isolates by pulsed-field gel electrophoresis and antibiotic resistance profiles. J. Food Prot. 65:266-273.
9. Dickins, M. A., S. Franklin, R. Stefanova, G. E. Schutze, K. D. Eisenach, I. Wesley, and M. D. Cave. 2002. Diversity of Campylobacter isolates from retail poultry carcasses and from humans as demonstrated by pulsed-field gel electrophoresis. J. Food Prot. 65:957-962.
10. Eyigor, A., K. A. Dawson, B. E. Langlois, and C. L. Pickett. 1999. Cytolethal distending toxin genes in Campylobacter jejuni and Campylobacter coli isolates: detection and analysis by PCR. J. Clin. Microbiol. 37:1646-1650.
11. Fermer, C., and E. O. Engvall. 1999. Specific PCR identification and differentiation of the thermophilic campylobacters, Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis. J. Clin. Microbiol. 37:3370-3373.
12. Gonzalez, I., T. Garcia, A. Antolin, P. E. Hernandez, and R. Martin. 2000. Development of a combined PCR-culture technique for the rapid detection of Arcobacter spp. in chicken meat. Lett. Appl. Microbiol. 30:207-212.
13. Heringa, J. 1999. Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment. Comput. Chem. 23:341-364.
14. Houng, H. S., O. Sethabutr, W. Nirdnoy, D. E. Katz, and L. W. Pang. 2001. Development of a ceuE-based multiplex polymerase chain reaction (PCR) assay for direct detection and differentiation of Campylobacter jejuni and Campylobacter coli in Thailand. Diagn. Microbiol. Infect. Dis. 40:11-19.
15. Kirk, R., and M. T. Rowe. 1994. A PCR assay for the detection of Campylobacter jejuni and Campylobacter coli in water. Lett. Appl. Microbiol. 19:301-303.
16. Lawson, A. J., M. S. Shafi, K. Pathak, and J. Stanley. 1998. Detection of campylobacter in gastroenteritis: comparison of direct PCR assay of faecal samples with selective culture. Epidemiol. Infect. 121:547-553.
17. Linton, D., R. J. Owen, and J. Stanley. 1996. Rapid identification by PCR of the genus Campylobacter and of five Campylobacter species enteropathogenic for man and animals. Res. Microbiol. 147:707-718.
18. Matsuda, M., M. Tsukada, M. Fukuyama, Y. Kato, Y. Ishida, M. Honda, and C. Kaneuchi. 1995. Detection of genomic variability among isolates of Campylobacter jejuni from chickens by crossed-field gel electrophoresis. Cytobios 82:73-79.
19. Mead, P. S., L. Slutsker, V. Dietz, L. F. McCaig, J. S. Bresee, C. Shapiro, P. M. Griffin, and R. V. Tauxe. 1999. Food-related illness and death in the United States. Emerg. Infect. Dis. 5:607-625.
20. Metherell, L. A., J. M. Logan, and J. Stanley. 1999. PCR-enzyme-linked immunosorbent assay for detection and identification of Campylobacter species: application to isolates and stool samples. J. Clin. Microbiol. 37:433-435.
21. Moreno, Y., M. Hernandez, M. A. Ferrus, J. L. Alonso, S. Botella, R. Montes, and J. Hernandez. 2001. Direct detection of thermotolerant campylobacters in chicken products by PCR and in situ hybridization. Res. Microbiol. 152:577-582.
22. Nesbit, E. G., P. Gibbs, D. W. Dreesen, and M. D. Lee. 2001. Epidemiologic features of Campylobacter jejuni isolated from poultry broiler houses and surrounding environments as determined by use of molecular strain typing. Am. J. Vet. Res. 62:190-194.
23. Okada, M., F. Hayashi, and N. Nagasaka. 2001. PCR detection of 5 putative periodontal pathogens in dental plaque samples from children 2 to 12 years of age. J. Clin. Periodontol. 28:576-582.
24. Opfer, C., J. Kleer, and G. Hildebrandt. 2001. Comparison of the two different PCR assays for the detection of thermotolerant Campylobacter in poultry. Berl. Munch. Tierarztl. Wochenschr. 114:470-472. (In German.)
25. O'Sullivan, N. A., R. Fallon, C. Carroll, T. Smith, and M. Maher. 2000. Detection and differentiation of Campylobacter jejuni and Campylobacter coli in broiler chicken samples using a PCR/DNA probe membrane based colorimetric detection assay. Mol. Cell Probes 14:7-16.
26. Oyofo, B. A., S. M. Abd el Salam, A. M. Churilla, and M. O: Wasfy. 1997. Rapid and sensitive detection of Campylobacter spp. from chicken using the polymerase chain reaction. Zentbl. Bakteriol. 285:480-485.
27. Oyofo, B. A., S. A. Thornton, D. H. Burr, T. J. Trust, O. R. Pavlovskis, and P. Guerry. 1992. Specific detection of Campylobacter jejuni and Campylobacter coli by using polymerase chain reaction. J. Clin. Microbiol. 30:2613-2619.
28. Ragimbeau, C., G. Salvat, P. Colin, and G. Ermel. 1998. Development of a multiplex PCR gene fingerprinting method using gyrA and pflA polymorphisms to identify genotypic relatedness within Campylobacter jejuni species. J. Appl. Microbiol. 85:829-838.
29. Rautelin, H., J. Jusufovic, and M. L. Hanninen. 1999. Identification of hippurate-negative thermophilic campylobacters. Diagn. Microbiol. Infect. Dis. 35:9-12.
30. Sails, A. D., F. J. Bolton, A. J. Fox, D. R. Wareing, and D. L. Greenway. 2002. Detection of Campylobacter jejuni and Campylobacter coli in environmental waters by PCR enzyme-linked immunosorbent assay. Appl. Environ. Microbiol. 68:1319-1324.
31. Sails, A. D., A. J. Fox, F. J. Bolton, D. R. Wareing, D. L. Greenway, and R. Borrow. 2001. Development of a PCR ELISA assay for the identification of Campylobacter jejuni and Campylobacter coli. Mol. Cell Probes 15:291-300.
32. Thunberg, R. L., T. T. Tran, and M. O. Walderhaug. 2000. Detection of thermophilic Campylobacter spp. in blood-free enriched samples of inoculated foods by the polymerase chain reaction. J. Food Prot. 63:299-303.
33. Totten, P. A., C. M. Patton, F. C. Tenover, T. J. Barrett, W. E. Stamm, A. G. Steigerwalt, J. Y. Lin, K. K. Holmes, and D. J. Brenner. 1987. Prevalence and characterization of hippurate-negative Campylobacter jejuni in King County, Washington. J. Clin. Microbiol. 25:1747-1752.
34. van Doorn, L. J., B. A. Giesendorf, R. Bax, B. A. van der Zeijst, P. Vandamme, and W. G. Quint. 1997. Molecular discrimination between Campylobacter jejuni, Campylobacter coli, Campylobacter lari, and Campylobacter upsaliensis by polymerase chain reaction based on a novel putative GTPase gene. Mol. Cell Probes 11:177-185.
35. Vanniasinkam, T., J. A. Lanser, and M. D. Barton. 1999. PCR for the detection of Campylobacter spp. in clinical specimens. Lett. Appl. Microbiol. 28:52-56.
36. Volokhov, D., A. Rasooly, K. Chumakov, and V. Chizhikov. 2002. Identification f listeria species by microarray-based assay. J. Clin. Microbiol. 40:4720-4728.
37. Waage, A. S., T. Vardund, V. Lund, and G. Kapperud. 1999. Detection of small numbers of Campylobacter jejuni and Campylobacter coli cells in environmental water, sewage, and food samples by a seminested PCR assay. Appl. Environ. Microbiol. 65:1636-1643.
38. Waller, D. F., and S. A. Ogata. 2000. Quantitative immunocapture PCR assay for detection of Campylobacter jejuni in foods. Appl. Environ. Microbiol. 66:4115-4118.
39. Winters, D. K., and M. F. Slavik. 2000. Multiplex PCR detection of Campylobacter jejuni and Arcobacter butzleri in food products. Mol. Cell Probes 14:95-99.