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Volumn 71, Issue 4, 2010, Pages 268-278

Variable numbers of tandem repeats in plasmodium falciparum genes

Author keywords

Copy number; Intragenic tandem repeats; Malaria genomics; Plasmodium falciparum; Polymorphisms; Variable number tandem repeats

Indexed keywords

MESSENGER RNA;

EID: 77957601375     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-010-9381-8     Document Type: Article
Times cited : (20)

References (87)
  • 1
    • 1842717952 scopus 로고    scopus 로고
    • Comparative analysis of amino acid repeats in rodents and humans
    • DOI 10.1101/gr.1925704
    • MM Alba R Guigo 2004 Comparative analysis of amino acid repeats in rodents and humans Genome Res 14 549 554 10.1101/gr.1925704 15059995 1:CAS:528:DC%2BD2cXjt1yjsbk%3D (Pubitemid 38500225)
    • (2004) Genome Research , vol.14 , Issue.4 , pp. 549-554
    • Alba, M.M.1    Guigo, R.2
  • 2
    • 0033664786 scopus 로고    scopus 로고
    • Complex mutations in a high proportion of microsatellite loci from the protozoan parasite Plasmodium falciparum
    • 10.1046/j.1365-294x.2000.01057.x 11050555 1:CAS:528:DC%2BD3cXnvV2gtLk%3D
    • TJ Anderson XZ Su A Roddam KP Day 2000 Complex mutations in a high proportion of microsatellite loci from the protozoan parasite Plasmodium falciparum Mol Ecol 9 1599 1608 10.1046/j.1365-294x.2000.01057.x 11050555 1:CAS:528:DC%2BD3cXnvV2gtLk%3D
    • (2000) Mol Ecol , vol.9 , pp. 1599-1608
    • Anderson, T.J.1    Su, X.Z.2    Roddam, A.3    Day, K.P.4
  • 5
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • DOI 10.1093/nar/27.2.573
    • G Benson 1999 Tandem repeats finder: a program to analyze DNA sequences Nucleic Acids Res 27 573 580 10.1093/nar/27.2.573 9862982 1:CAS:528: DyaK1MXhtVKmtrg%3D (Pubitemid 29210025)
    • (1999) Nucleic Acids Research , vol.27 , Issue.2 , pp. 573-580
    • Benson, G.1
  • 6
    • 34447286827 scopus 로고    scopus 로고
    • The role of DNA mismatch repair in generating genetic diversity and drug resistance in malaria parasites
    • DOI 10.1016/j.molbiopara.2007.05.003, PII S0166685107001405
    • L Bethke S Thomas K Walker R Lakhia R Rangarajan D Wirth 2007 The role of DNA mismatch repair in generating genetic diversity and drug resistance in malaria parasites Mol Biochem Parasitol 155 18 25 10.1016/j.molbiopara.2007.05. 003 17583362 1:CAS:528:DC%2BD2sXns1yktr8%3D (Pubitemid 47042213)
    • (2007) Molecular and Biochemical Parasitology , vol.155 , Issue.1 , pp. 18-25
    • Bethke, L.1    Thomas, S.2    Walker, K.3    Lakhia, R.4    Rangarajan, R.5    Wirth, D.6
  • 7
    • 22944445811 scopus 로고    scopus 로고
    • Patterns of polymorphism and divergence in stress-related yeast proteins
    • DOI 10.1002/yea.1240
    • S Bowen C Roberts AE Wheals 2005 Patterns of polymorphism and divergence in stress-related yeast proteins Yeast 22 659 668 10.1002/yea.1240 16032761 1:CAS:528:DC%2BD2MXnt1Oqtrk%3D (Pubitemid 41052158)
    • (2005) Yeast , vol.22 , Issue.8 , pp. 659-668
    • Bowen, S.1    Roberts, C.2    Wheals, A.E.3
  • 9
    • 12344269924 scopus 로고    scopus 로고
    • GO::TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • DOI 10.1093/bioinformatics/bth456
    • EI Boyle S Weng J Gollub H Jin D Botstein JM Cherry G Sherlock 2004 GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes Bioinformatics 20 3710 3715 10.1093/bioinformatics/bth456 15297299 1:CAS:528:DC%2BD2cXhtVOjsrrN (Pubitemid 40136825)
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5    Cherry, J.M.6    Sherlock, G.7
  • 10
    • 27644464529 scopus 로고    scopus 로고
    • Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays
    • DOI 10.1016/j.molbiopara.2005.08.010, PII S0166685105002550
    • CK Carret P Horrocks B Konfortov E Winzeler M Qureshi C Newbold A Ivens 2005 Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays Mol Biochem Parasitol 144 177 186 10.1016/j.molbiopara.2005.08.010 16174539 1:CAS:528:DC%2BD2MXht1WjtbzP (Pubitemid 41572224)
    • (2005) Molecular and Biochemical Parasitology , vol.144 , Issue.2 , pp. 177-186
    • Carret, C.K.1    Horrocks, P.2    Konfortov, B.3    Winzeler, E.4    Qureshi, M.5    Newbold, C.6    Ivens, A.7
  • 12
    • 69249119804 scopus 로고    scopus 로고
    • Gene copy number variation throughout the Plasmodium falciparum genome
    • 10.1186/1471-2164-10-353 19653891 1:CAS:528:DC%2BD1MXhtVWmtrnI
    • IH Cheeseman N Gomez-Escobar CK Carret A Ivens LB Stewart KK Tetteh DJ Conway 2009 Gene copy number variation throughout the Plasmodium falciparum genome BMC Genomics 10 353 10.1186/1471-2164-10-353 19653891 1:CAS:528:DC%2BD1MXhtVWmtrnI
    • (2009) BMC Genomics , vol.10 , pp. 353
    • Cheeseman, I.H.1    Gomez-Escobar, N.2    Carret, C.K.3    Ivens, A.4    Stewart, L.B.5    Tetteh, K.K.6    Conway, D.J.7
  • 13
    • 0037699291 scopus 로고    scopus 로고
    • The role of mutators in the emergence of antibiotic-resistant bacteria
    • DOI 10.1016/S1368-7646(03)00041-4
    • I Chopra AJ O'Neill K Miller 2003 The role of mutators in the emergence of antibiotic-resistant bacteria Drug Resist Updat 6 137 145 10.1016/S1368-7646(03)00041-4 12860461 1:CAS:528:DC%2BD3sXlsVSmtL4%3D (Pubitemid 36890338)
    • (2003) Drug Resistance Updates , vol.6 , Issue.3 , pp. 137-145
    • Chopra, I.1    O'Neill, A.J.2    Miller, K.3
  • 14
    • 0024423767 scopus 로고
    • DNA tertiary structures formed in vitro by misaligned hybridization of multiple tandem repeat sequences
    • 10.1093/nar/17.18.7417 2677997 1:CAS:528:DyaL1MXmtFSltLY%3D
    • LW Coggins M O'Prey 1989 DNA tertiary structures formed in vitro by misaligned hybridization of multiple tandem repeat sequences Nucleic Acids Res 17 7417 7426 10.1093/nar/17.18.7417 2677997 1:CAS:528:DyaL1MXmtFSltLY%3D
    • (1989) Nucleic Acids Res , vol.17 , pp. 7417-7426
    • Coggins, L.W.1    O'Prey, M.2
  • 15
    • 60349122402 scopus 로고    scopus 로고
    • Intragenic tandem repeat variation between Legionella pneumophila strains
    • 10.1186/1471-2180-8-218 19077205 1:CAS:528:DC%2BD1MXhsFGisg%3D%3D
    • DA Coil L Vandersmissen C Ginevra S Jarraud E Lammertyn J Anne 2008 Intragenic tandem repeat variation between Legionella pneumophila strains BMC Microbiol 8 218 10.1186/1471-2180-8-218 19077205 1:CAS:528: DC%2BD1MXhsFGisg%3D%3D
    • (2008) BMC Microbiol , vol.8 , pp. 218
    • Coil, D.A.1    Vandersmissen, L.2    Ginevra, C.3    Jarraud, S.4    Lammertyn, E.5    Anne, J.6
  • 17
    • 18244396971 scopus 로고    scopus 로고
    • Alternative mutations at position 76 of the vacuolar transmembrane protein PfCRT are associated with chloroquine resistance and unique stereospecific quinine and quinidine responses in Plasmodium falciparum
    • DOI 10.1124/mol.61.1.35
    • RA Cooper MT Ferdig XZ Su LM Ursos J Mu T Nomura H Fujioka DA Fidock PD Roepe TE Wellems 2002 Alternative mutations at position 76 of the vacuolar transmembrane protein PfCRT are associated with chloroquine resistance and unique stereospecific quinine and quinidine responses in Plasmodium falciparum Mol Pharmacol 61 35 42 10.1124/mol.61.1.35 11752204 1:CAS:528:DC%2BD38XltlSn (Pubitemid 34049510)
    • (2002) Molecular Pharmacology , vol.61 , Issue.1 , pp. 35-42
    • Cooper, R.A.1    Ferdig, M.T.2    Su, X.-Z.3    Ursos, L.M.B.4    Mu, J.5    Nomura, T.6    Fujioka, H.7    Fidock, D.A.8    Roepe, P.D.9    Wellems, T.E.10
  • 18
    • 0021622987 scopus 로고
    • The ring-infected erythrocyte surface antigen (RESA) polypeptide of Plasmodium falciparum contains two separate blocks of tandem repeats encoding antigenic epitopes that are naturally immunogenic in man
    • 6085696 1:CAS:528:DyaL2MXltVejtLo%3D
    • AF Cowman RL Coppel RB Saint J Favaloro PE Crewther HD Stahl AE Bianco GV Brown RF Anders DJ Kemp 1984 The ring-infected erythrocyte surface antigen (RESA) polypeptide of Plasmodium falciparum contains two separate blocks of tandem repeats encoding antigenic epitopes that are naturally immunogenic in man Mol Biol Med 2 207 221 6085696 1:CAS:528:DyaL2MXltVejtLo%3D
    • (1984) Mol Biol Med , vol.2 , pp. 207-221
    • Cowman, A.F.1    Coppel, R.L.2    Saint, R.B.3    Favaloro, J.4    Crewther, P.E.5    Stahl, H.D.6    Bianco, A.E.7    Brown, G.V.8    Anders, R.F.9    Kemp, D.J.10
  • 19
    • 37049184983 scopus 로고
    • Structure of the gene encoding the immunodominant surface antigen on the sporozoite of the human malaria parasite Plasmodium falciparum
    • 10.1126/science.6204383 6204383 1:CAS:528:DyaL2cXls1Cltr4%3D
    • JB Dame JL Williams TF McCutchan JL Weber RA Wirtz WT Hockmeyer WL Maloy JD Haynes I Schneider D Roberts, et al. 1984 Structure of the gene encoding the immunodominant surface antigen on the sporozoite of the human malaria parasite Plasmodium falciparum Science 225 593 599 10.1126/science.6204383 6204383 1:CAS:528:DyaL2cXls1Cltr4%3D
    • (1984) Science , vol.225 , pp. 593-599
    • Dame, J.B.1    Williams, J.L.2    McCutchan, T.F.3    Weber, J.L.4    Wirtz, R.A.5    Hockmeyer, W.T.6    Maloy, W.L.7    Haynes, J.D.8    Schneider, I.9    Roberts, D.10
  • 20
    • 33646397599 scopus 로고    scopus 로고
    • Evolution of mutation rates in bacteria
    • 10.1111/j.1365-2958.2006.05150.x 16677295 1:CAS:528:DC%2BD28XlvVaku7Y%3D
    • E Denamur I Matic 2006 Evolution of mutation rates in bacteria Mol Microbiol 60 820 827 10.1111/j.1365-2958.2006.05150.x 16677295 1:CAS:528:DC%2BD28XlvVaku7Y%3D
    • (2006) Mol Microbiol , vol.60 , pp. 820-827
    • Denamur, E.1    Matic, I.2
  • 21
    • 0032525245 scopus 로고    scopus 로고
    • The identification and characterization of microsatellites in the compact genome of the Japanese Pufferfish, Fugu rubripes: Perspectives in functional and comparative genomic analyses
    • DOI 10.1006/jmbi.1998.1752
    • YJ Edwards G Elgar MS Clark MJ Bishop 1998 The identification and characterization of microsatellites in the compact genome of the Japanese pufferfish, Fugu rubripes: perspectives in functional and comparative genomic analyses J Mol Biol 278 843 854 10.1006/jmbi.1998.1752 9614946 1:CAS:528:DyaK1cXjsV2gt7k%3D (Pubitemid 28224900)
    • (1998) Journal of Molecular Biology , vol.278 , Issue.4 , pp. 843-854
    • Edwards, Y.J.K.1    Elgar, G.2    Clark, M.S.3    Bishop, M.J.4
  • 22
    • 3042782819 scopus 로고    scopus 로고
    • Microsatellites: Simple sequences with complex evolution
    • DOI 10.1038/nrg1348
    • H Ellegren 2004 Microsatellites: simple sequences with complex evolution Nat Rev Genet 5 435 445 10.1038/nrg1348 15153996 1:CAS:528:DC%2BD2cXktV2rsrg%3D (Pubitemid 38915410)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.6 , pp. 435-445
    • Ellegren, H.1
  • 24
    • 0029002122 scopus 로고
    • Evolutionary origin of human and primate malarias: Evidence from the circumsporozoite protein gene
    • 7659017 1:CAS:528:DyaK2MXmsVOqs7g%3D
    • AA Escalante E Barrio FJ Ayala 1995 Evolutionary origin of human and primate malarias: evidence from the circumsporozoite protein gene Mol Biol Evol 12 616 626 7659017 1:CAS:528:DyaK2MXmsVOqs7g%3D
    • (1995) Mol Biol Evol , vol.12 , pp. 616-626
    • Escalante, A.A.1    Barrio, E.2    Ayala, F.J.3
  • 25
    • 0033972531 scopus 로고    scopus 로고
    • Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends
    • DOI 10.1016/S0166-6851(99)00199-1, PII S0166685199001991
    • LM Figueiredo LA Pirrit A Scherf 2000 Genomic organisation and chromatin structure of Plasmodium falciparum chromosome ends Mol Biochem Parasitol 106 169 174 10.1016/S0166-6851(99)00199-1 10743621 1:CAS:528:DC%2BD3cXpsFaluw%3D%3D (Pubitemid 30089220)
    • (2000) Molecular and Biochemical Parasitology , vol.106 , Issue.1 , pp. 169-174
    • Figueiredo, L.M.1    Pirritt, L.A.2    Scherf, A.3
  • 27
    • 35148899681 scopus 로고    scopus 로고
    • Stress-induced mutagenesis in bacteria
    • DOI 10.1080/10409230701648494, PII 782797248
    • PL Foster 2007 Stress-induced mutagenesis in bacteria Crit Rev Biochem Mol Biol 42 373 397 10.1080/10409230701648494 17917873 1:CAS:528: DC%2BD2sXhtFWqsrnK (Pubitemid 47537271)
    • (2007) Critical Reviews in Biochemistry and Molecular Biology , vol.42 , Issue.5 , pp. 373-397
    • Foster, P.L.1
  • 31
    • 60149093916 scopus 로고    scopus 로고
    • Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes
    • 10.1093/molbev/msn277 19056904 1:CAS:528:DC%2BD1MXhvF2ktro%3D
    • JG Gibbons A Rokas 2009 Comparative and functional characterization of intragenic tandem repeats in 10 Aspergillus genomes Mol Biol Evol 26 591 602 10.1093/molbev/msn277 19056904 1:CAS:528:DC%2BD1MXhvF2ktro%3D
    • (2009) Mol Biol Evol , vol.26 , pp. 591-602
    • Gibbons, J.G.1    Rokas, A.2
  • 32
    • 51949085777 scopus 로고    scopus 로고
    • Immunological dominance of Trypanosoma cruzi tandem repeat proteins
    • 10.1128/IAI.00604-08 18625739 1:CAS:528:DC%2BD1cXhtVyrsLfP
    • Y Goto D Carter SG Reed 2008 Immunological dominance of Trypanosoma cruzi tandem repeat proteins Infect Immun 76 3967 3974 10.1128/IAI.00604-08 18625739 1:CAS:528:DC%2BD1cXhtVyrsLfP
    • (2008) Infect Immun , vol.76 , pp. 3967-3974
    • Goto, Y.1    Carter, D.2    Reed, S.G.3
  • 33
    • 13444292317 scopus 로고    scopus 로고
    • Simple sequence repeats in proteins and their significance for network evolution
    • DOI 10.1016/j.gene.2004.11.023, PII S0378111904006961
    • JM Hancock M Simon 2005 Simple sequence repeats in proteins and their significance for network evolution Gene 345 113 118 10.1016/j.gene.2004.11.023 15716087 1:CAS:528:DC%2BD2MXhtFejsbY%3D (Pubitemid 40208507)
    • (2005) Gene , vol.345 , Issue.SPEC. ISS.1 , pp. 113-118
    • Hancock, J.M.1    Simon, M.2
  • 35
    • 4644308502 scopus 로고    scopus 로고
    • The evolution of amino acid repeat arrays in Plasmodium and other organisms
    • DOI 10.1007/s00239-004-2645-4
    • AL Hughes 2004 The evolution of amino acid repeat arrays in Plasmodium and other organisms J Mol Evol 59 528 535 10.1007/s00239-004-2645-4 15638464 1:CAS:528:DC%2BD2cXoslyrsrY%3D (Pubitemid 39305144)
    • (2004) Journal of Molecular Evolution , vol.59 , Issue.4 , pp. 528-535
    • Hughes, A.L.1
  • 36
    • 37549010337 scopus 로고    scopus 로고
    • Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species
    • 10.1093/molbev/msm129 17602168 1:CAS:528:DC%2BD1cXnsVGjtg%3D%3D
    • MA Huntley AG Clark 2007 Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species Mol Biol Evol 24 2598 2609 10.1093/molbev/msm129 17602168 1:CAS:528:DC%2BD1cXnsVGjtg%3D%3D
    • (2007) Mol Biol Evol , vol.24 , pp. 2598-2609
    • Huntley, M.A.1    Clark, A.G.2
  • 39
    • 2942706116 scopus 로고    scopus 로고
    • Diversity in coding tandem repeats in related Neisseria spp
    • 10.1186/1471-2180-3-23 14611665
    • P Jordan LA Snyder NJ Saunders 2003 Diversity in coding tandem repeats in related Neisseria spp BMC Microbiol 3 23 10.1186/1471-2180-3-23 14611665
    • (2003) BMC Microbiol , vol.3 , pp. 23
    • Jordan, P.1    Snyder, L.A.2    Saunders, N.J.3
  • 40
    • 0023487305 scopus 로고
    • Repetitive proteins and genes of malaria
    • 10.1146/annurev.mi.41.100187.001145 3318667 1:CAS:528:DyaL2sXmtlSit7Y%3D
    • DJ Kemp RL Coppel RF Anders 1987 Repetitive proteins and genes of malaria Annu Rev Microbiol 41 181 208 10.1146/annurev.mi.41.100187.001145 3318667 1:CAS:528:DyaL2sXmtlSit7Y%3D
    • (1987) Annu Rev Microbiol , vol.41 , pp. 181-208
    • Kemp, D.J.1    Coppel, R.L.2    Anders, R.F.3
  • 41
    • 0035394437 scopus 로고    scopus 로고
    • Reduced FMRP and increased FMR1 transcription is proportionally associated with CGG repeat number in intermediate-length and premutation carriers
    • 10.1093/hmg/10.14.1449 11448936 1:CAS:528:DC%2BD3MXlsFOgurs%3D
    • A Kenneson F Zhang CH Hagedorn ST Warren 2001 Reduced FMRP and increased FMR1 transcription is proportionally associated with CGG repeat number in intermediate-length and premutation carriers Hum Mol Genet 10 1449 1454 10.1093/hmg/10.14.1449 11448936 1:CAS:528:DC%2BD3MXlsFOgurs%3D
    • (2001) Hum Mol Genet , vol.10 , pp. 1449-1454
    • Kenneson, A.1    Zhang, F.2    Hagedorn, C.H.3    Warren, S.T.4
  • 43
    • 1542285447 scopus 로고    scopus 로고
    • Toxoplasma gondii: The model apicomplexan
    • DOI 10.1016/j.ijpara.2003.12.009, PII S0020751904000062
    • K Kim LM Weiss 2004 Toxoplasma gondii: the model apicomplexan Int J Parasitol 34 423 432 10.1016/j.ijpara.2003.12.009 15003501 1:CAS:528: DC%2BD2cXhslegsL4%3D (Pubitemid 38299191)
    • (2004) International Journal for Parasitology , vol.34 , Issue.3 , pp. 423-432
    • Kim, K.1    Weiss, L.M.2
  • 44
    • 0022527674 scopus 로고
    • A tandemly repeated sequence determines the binding domain for an erythrocyte receptor binding protein of P. falciparum
    • 10.1016/0092-8674(86)90834-2 3512098 1:CAS:528:DyaL28XitVWnsrY%3D
    • J Kochan M Perkins JV Ravetch 1986 A tandemly repeated sequence determines the binding domain for an erythrocyte receptor binding protein of P. falciparum Cell 44 689 696 10.1016/0092-8674(86)90834-2 3512098 1:CAS:528:DyaL28XitVWnsrY%3D
    • (1986) Cell , vol.44 , pp. 689-696
    • Kochan, J.1    Perkins, M.2    Ravetch, J.V.3
  • 45
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin Modifications and Their Function
    • DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
    • T Kouzarides 2007 Chromatin modifications and their function Cell 128 693 705 10.1016/j.cell.2007.02.005 17320507 1:CAS:528:DC%2BD2sXis12ju7Y%3D (Pubitemid 46273577)
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 46
    • 34547863851 scopus 로고    scopus 로고
    • Coding tandem repeats generate diversity in Aspergillus fumigatus genes
    • DOI 10.1128/EC.00229-06
    • E Levdansky J Romano Y Shadkchan H Sharon KJ Verstrepen GR Fink N Osherov 2007 Coding tandem repeats generate diversity in Aspergillus fumigatus genes Eukaryot Cell 6 1380 1391 10.1128/EC.00229-06 17557878 1:CAS:528: DC%2BD2sXpt1aks7w%3D (Pubitemid 47257707)
    • (2007) Eukaryotic Cell , vol.6 , Issue.8 , pp. 1380-1391
    • Levdansky, E.1    Romano, J.2    Shadkchan, Y.3    Sharon, H.4    Verstrepen, K.J.5    Fink, G.R.6    Osherov, N.7
  • 47
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • 3328815 1:CAS:528:DyaL2sXksFejsLw%3D
    • G Levinson GA Gutman 1987 Slipped-strand mispairing: a major mechanism for DNA sequence evolution Mol Biol Evol 4 203 221 3328815 1:CAS:528: DyaL2sXksFejsLw%3D
    • (1987) Mol Biol Evol , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 48
    • 0033951367 scopus 로고    scopus 로고
    • Selection against frameshift mutations limits microsatellite expansion in coding DNA
    • 10645952 1:CAS:528:DC%2BD3cXpsl2jsQ%3D%3D
    • D Metzgar J Bytof C Wills 2000 Selection against frameshift mutations limits microsatellite expansion in coding DNA Genome Res 10 72 80 10645952 1:CAS:528:DC%2BD3cXpsl2jsQ%3D%3D
    • (2000) Genome Res , vol.10 , pp. 72-80
    • Metzgar, D.1    Bytof, J.2    Wills, C.3
  • 49
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • 10.1038/ng822 11799393 1:CAS:528:DC%2BD38XhtFWltLs%3D
    • M Morgante M Hanafey W Powell 2002 Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes Nat Genet 30 194 200 10.1038/ng822 11799393 1:CAS:528:DC%2BD38XhtFWltLs%3D
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 50
    • 33845914565 scopus 로고    scopus 로고
    • Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome
    • DOI 10.1038/ng1924, PII NG1924
    • J Mu P Awadalla J Duan KM McGee J Keebler K Seydel GA McVean XZ Su 2007 Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome Nat Genet 39 126 130 10.1038/ng1924 17159981 1:CAS:528:DC%2BD28XhtlGktLvO (Pubitemid 46026512)
    • (2007) Nature Genetics , vol.39 , Issue.1 , pp. 126-130
    • Mu, J.1    Awadalla, P.2    Duan, J.3    McGee, K.M.4    Keebler, J.5    Seydel, K.6    McVean, G.A.T.7    Su, X.-Z.8
  • 53
    • 33745056327 scopus 로고    scopus 로고
    • Tandem repeat copy-number variation in protein-coding regions of human genes
    • 10.1186/gb-2005-6-8-r69 16086851 1:CAS:528:DC%2BD2MXpsFKisLs%3D
    • CT O'Dushlaine RJ Edwards SD Park DC Shields 2005 Tandem repeat copy-number variation in protein-coding regions of human genes Genome Biol 6 R69 10.1186/gb-2005-6-8-r69 16086851 1:CAS:528:DC%2BD2MXpsFKisLs%3D
    • (2005) Genome Biol , vol.6 , pp. 69
    • O'Dushlaine, C.T.1    Edwards, R.J.2    Park, S.D.3    Shields, D.C.4
  • 54
    • 0022644795 scopus 로고
    • Characterisation of a repetitive DNA sequence from the malaria parasite, Plasmodium falciparum
    • DOI 10.1016/0166-6851(86)90053-8
    • P Oquendo M Goman M Mackay G Langsley D Walliker J Scaife 1986 Characterisation of a repetitive DNA sequence from the malaria parasite, Plasmodium falciparum Mol Biochem Parasitol 18 89 101 10.1016/0166-6851(86) 90053-8 2938003 1:CAS:528:DyaL28XotlSitw%3D%3D (Pubitemid 16169351)
    • (1986) Molecular and Biochemical Parasitology , vol.18 , Issue.1 , pp. 89-101
    • Oquendo, P.1    Goman, M.2    Mackay, M.3
  • 55
    • 0034647916 scopus 로고    scopus 로고
    • Splicing factors induce cystic fibrosis transmembrane regulator exon 9 skipping through a nonevolutionary conserved intronic element
    • DOI 10.1074/jbc.M910165199
    • F Pagani E Buratti C Stuani M Romano E Zuccato M Niksic L Giglio D Faraguna FE Baralle 2000 Splicing factors induce cystic fibrosis transmembrane regulator exon 9 skipping through a nonevolutionary conserved intronic element J Biol Chem 275 21041 21047 10.1074/jbc.M910165199 10766763 1:CAS:528: DC%2BD3cXkvFGjtLw%3D (Pubitemid 30481793)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.28 , pp. 21041-21047
    • Pagani, F.1    Buratti, E.2    Stuani, C.3    Romano, M.4    Zuccato, E.5    Niksic, M.6    Giglio, L.7    Faraguna, D.8    Baralle, F.E.9
  • 57
    • 0035104190 scopus 로고    scopus 로고
    • Low-complexity regions in Plasmodium falciparum proteins
    • DOI 10.1101/gr.GR-1522R
    • E Pizzi C Frontali 2001 Low-complexity regions in Plasmodium falciparum proteins Genome Res 11 218 229 10.1101/gr.GR-1522R 11157785 1:CAS:528: DC%2BD3MXht1GqtL0%3D (Pubitemid 32166531)
    • (2001) Genome Research , vol.11 , Issue.2 , pp. 218-229
    • Pizzi, E.1    Frontali, C.2
  • 58
    • 33847208871 scopus 로고    scopus 로고
    • Timescales of genetic and epigenetic inheritance
    • 10.1016/j.cell.2007.01.023 17320504 1:CAS:528:DC%2BD2sXis12ju7s%3D
    • OJ Rando KJ Verstrepen 2007 Timescales of genetic and epigenetic inheritance Cell 128 655 668 10.1016/j.cell.2007.01.023 17320504 1:CAS:528:DC%2BD2sXis12ju7s%3D
    • (2007) Cell , vol.128 , pp. 655-668
    • Rando, O.J.1    Verstrepen, K.J.2
  • 61
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • 10.1016/S0168-9525(00)02024-2 10827456 1:CAS:528:DC%2BD3cXjvVygsbs%3D
    • P Rice I Longden A Bleasby 2000 EMBOSS: the European Molecular Biology Open Software Suite Trends Genet 16 276 277 10.1016/S0168-9525(00)02024-2 10827456 1:CAS:528:DC%2BD3cXjvVygsbs%3D
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 64
    • 28944438876 scopus 로고    scopus 로고
    • Molecular evolution of minisatellites in hemiascomycetous yeasts
    • DOI 10.1093/molbev/msj022
    • GF Richard B Dujon 2006 Molecular evolution of minisatellites in hemiascomycetous yeasts Mol Biol Evol 23 189 202 10.1093/molbev/msj022 16177231 1:CAS:528:DC%2BD2MXhtleqtLnO (Pubitemid 41785966)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.1 , pp. 189-202
    • Richard, G.-F.1    Dujon, B.2
  • 65
    • 0347358913 scopus 로고    scopus 로고
    • The evolution of molecular markers - Just a matter of fashion?
    • DOI 10.1038/nrg1249
    • C Schlotterer 2004 The evolution of molecular markers-just a matter of fashion? Nat Rev Genet 5 63 69 10.1038/nrg1249 14666112 1:CAS:528: DC%2BD3sXps1SgsLk%3D (Pubitemid 38055337)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.1 , pp. 63-69
    • Schlotterer, C.1
  • 66
    • 0025845542 scopus 로고
    • On the function of repetitive domains in protein antigens of Plasmodium and other eukaryotic parasites
    • 10.1016/0169-4758(91)90166-L 15463458 1:STN:280:DC%2BD2cvpvVyitw%3D%3D
    • L Schofield 1991 On the function of repetitive domains in protein antigens of Plasmodium and other eukaryotic parasites Parasitol Today 7 99 105 10.1016/0169-4758(91)90166-L 15463458 1:STN:280:DC%2BD2cvpvVyitw%3D%3D
    • (1991) Parasitol Today , vol.7 , pp. 99-105
    • Schofield, L.1
  • 67
    • 33745586741 scopus 로고    scopus 로고
    • Genomic and evolutionary insights into genes encoding proteins with single amino acid repeats
    • DOI 10.1093/molbev/msk022
    • P Siwach SD Pophaly S Ganesh 2006 Genomic and evolutionary insights into genes encoding proteins with single amino acid repeats Mol Biol Evol 23 1357 1369 10.1093/molbev/msk022 16618963 1:CAS:528:DC%2BD28XmsVOkur4%3D (Pubitemid 43992337)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.7 , pp. 1357-1369
    • Siwach, P.1    Pophaly, S.D.2    Ganesh, S.3
  • 69
    • 0021921568 scopus 로고
    • Interspersed blocks of repetitive and charged amino acids in a dominant immunogen of Plasmodium falciparum
    • DOI 10.1073/pnas.82.2.543
    • HD Stahl PE Crewther RF Anders GV Brown RL Coppel AE Bianco GF Mitchell DJ Kemp 1985 Interspersed blocks of repetitive and charged amino acids in a dominant immunogen of Plasmodium falciparum Proc Natl Acad Sci USA 82 543 547 10.1073/pnas.82.2.543 3881769 1:CAS:528:DyaL2MXitFKitLs%3D (Pubitemid 15128304)
    • (1985) Proceedings of the National Academy of Sciences of the United States of America , vol.82 , Issue.2 , pp. 543-547
    • Stahl, H.-D.1    Crewther, P.E.2    Anders, R.F.3
  • 70
    • 0029996805 scopus 로고    scopus 로고
    • Toward a high-resolution Plasmodium falciparum linkage map: Polymorphic markers from hundreds of simple sequence repeats
    • DOI 10.1006/geno.1996.0218
    • X Su TE Wellems 1996 Toward a high-resolution Plasmodium falciparum linkage map: polymorphic markers from hundreds of simple sequence repeats Genomics 33 430 444 10.1006/geno.1996.0218 8661002 1:CAS:528:DyaK28XjtVWjsbs%3D (Pubitemid 26159859)
    • (1996) Genomics , vol.33 , Issue.3 , pp. 430-444
    • Su, X.-Z.1    Wellems, T.E.2
  • 71
    • 0032698219 scopus 로고    scopus 로고
    • A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum
    • DOI 10.1126/science.286.5443.1351
    • X Su MT Ferdig Y Huang CQ Huynh A Liu J You JC Wootton TE Wellems 1999 A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum Science 286 1351 1353 10.1126/science.286.5443.1351 10558988 1:CAS:528:DyaK1MXnsVekurk%3D (Pubitemid 29535893)
    • (1999) Science , vol.286 , Issue.5443 , pp. 1351-1353
    • Su, X.-Z.1    Ferdig, M.T.2    Huang, Y.3    Huynh, C.Q.4    Liu, A.5    You, J.6    Wootton, J.C.7    Wellems, T.E.8
  • 72
    • 67349266986 scopus 로고    scopus 로고
    • Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum
    • 10.1016/j.ygeno.2009.02.007 19285129 1:CAS:528:DC%2BD1MXlvFGnu7s%3D
    • JC Tan JJ Patel A Tan JC Blain TJ Albert NF Lobo MT Ferdig 2009 Optimizing comparative genomic hybridization probes for genotyping and SNP detection in Plasmodium falciparum Genomics 93 543 550 10.1016/j.ygeno.2009.02. 007 19285129 1:CAS:528:DC%2BD1MXlvFGnu7s%3D
    • (2009) Genomics , vol.93 , pp. 543-550
    • Tan, J.C.1    Patel, J.J.2    Tan, A.3    Blain, J.C.4    Albert, T.J.5    Lobo, N.F.6    Ferdig, M.T.7
  • 73
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: Surveys and analysis
    • DOI 10.1101/gr.10.7.967
    • G Toth Z Gaspari J Jurka 2000 Microsatellites in different eukaryotic genomes: survey and analysis Genome Res 10 967 981 10.1101/gr.10.7.967 10899146 1:CAS:528:DC%2BD3cXltFGjsb0%3D (Pubitemid 30608632)
    • (2000) Genome Research , vol.10 , Issue.7 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 74
    • 0023333815 scopus 로고
    • The complete sequence of the gene for the knob-associated histidine-rich protein from Plasmodium falciparum
    • 3301325 1:CAS:528:DyaL2sXlsVygsLo%3D
    • T Triglia HD Stahl PE Crewther D Scanlon GV Brown RF Anders DJ Kemp 1987 The complete sequence of the gene for the knob-associated histidine-rich protein from Plasmodium falciparum EMBO J 6 1413 1419 3301325 1:CAS:528: DyaL2sXlsVygsLo%3D
    • (1987) EMBO J , vol.6 , pp. 1413-1419
    • Triglia, T.1    Stahl, H.D.2    Crewther, P.E.3    Scanlon, D.4    Brown, G.V.5    Anders, R.F.6    Kemp, D.J.7
  • 75
    • 2142657830 scopus 로고    scopus 로고
    • Defective DNA Repair as a Potential Mechanism for the Rapid Development of Drug Resistance in Plasmodium falciparum
    • DOI 10.1021/bi0499258
    • RF Trotta ML Brown JC Terrell JA Geyer 2004 Defective DNA repair as a potential mechanism for the rapid development of drug resistance in Plasmodium falciparum Biochemistry 43 4885 4891 10.1021/bi0499258 15109245 1:CAS:528:DC%2BD2cXivFSktrc%3D (Pubitemid 38544442)
    • (2004) Biochemistry , vol.43 , Issue.17 , pp. 4885-4891
    • Trotta, R.F.1    Brown, M.L.2    Terrell, J.C.3    Geyer, J.A.4
  • 77
    • 25144494777 scopus 로고    scopus 로고
    • Intragenic tandem repeats generate functional variability
    • DOI 10.1038/ng1618, PII NG1618
    • KJ Verstrepen A Jansen F Lewitter GR Fink 2005 Intragenic tandem repeats generate functional variability Nat Genet 37 986 990 10.1038/ng1618 16086015 1:CAS:528:DC%2BD2MXpsFWisLk%3D (Pubitemid 43086157)
    • (2005) Nature Genetics , vol.37 , Issue.9 , pp. 986-990
    • Verstrepen, K.J.1    Jansen, A.2    Lewitter, F.3    Fink, G.R.4
  • 78
    • 33645843061 scopus 로고    scopus 로고
    • Wide variation in microsatellite sequences within each Pfcrt mutant haplotype
    • 10.1016/j.molbiopara.2006.01.013 16516311 1:CAS:528:DC%2BD28XjvVWnu7s%3D
    • S Vinayak P Mittra YD Sharma 2006 Wide variation in microsatellite sequences within each Pfcrt mutant haplotype Mol Biochem Parasitol 147 101 108 10.1016/j.molbiopara.2006.01.013 16516311 1:CAS:528:DC%2BD28XjvVWnu7s%3D
    • (2006) Mol Biochem Parasitol , vol.147 , pp. 101-108
    • Vinayak, S.1    Mittra, P.2    Sharma, Y.D.3
  • 79
    • 66349113764 scopus 로고    scopus 로고
    • Unstable tandem repeats in promoters confer transcriptional evolvability
    • 10.1126/science.1170097 19478187 1:CAS:528:DC%2BD1MXmsVGisLg%3D
    • MD Vinces M Legendre M Caldara M Hagihara KJ Verstrepen 2009 Unstable tandem repeats in promoters confer transcriptional evolvability Science 324 1213 1216 10.1126/science.1170097 19478187 1:CAS:528:DC%2BD1MXmsVGisLg%3D
    • (2009) Science , vol.324 , pp. 1213-1216
    • Vinces, M.D.1    Legendre, M.2    Caldara, M.3    Hagihara, M.4    Verstrepen, K.J.5
  • 80
    • 33845639625 scopus 로고    scopus 로고
    • Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum
    • DOI 10.1016/j.gene.2006.07.026, PII S0378111906005002
    • SK Volkman E Lozovsky AE Barry T Bedford L Bethke A Myrick KP Day DL Hartl DF Wirth SA Sawyer 2007 Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum Gene 387 1 6 10.1016/j.gene.2006.07.026 17005334 1:CAS:528:DC%2BD28XhtlCmtL7I (Pubitemid 44959556)
    • (2007) Gene , vol.387 , Issue.1-2 , pp. 1-6
    • Volkman, S.K.1    Lozovsky, E.2    Barry, A.E.3    Bedford, T.4    Bethke, L.5    Myrick, A.6    Day, K.P.7    Hartl, D.L.8    Wirth, D.F.9    Sawyer, S.A.10
  • 82
    • 0028139945 scopus 로고
    • Survey of plant short tandem DNA repeats
    • 1:CAS:528:DyaK2MXjsVWksw%3D%3D
    • Z Wang JL Weber G Zhong SD Tanksley 1994 Survey of plant short tandem DNA repeats Theor Appl Genet 88 1 6 1:CAS:528:DyaK2MXjsVWksw%3D%3D
    • (1994) Theor Appl Genet , vol.88 , pp. 1-6
    • Wang, Z.1    Weber, J.L.2    Zhong, G.3    Tanksley, S.D.4
  • 83
    • 0025305350 scopus 로고
    • Chloroquine resistance not linked to mdr-like genes in Plasmodium falciparum cross
    • DOI 10.1038/345253a0
    • TE Wellems LJ Panton IY Gluzman VE do Rosario RW Gwadz A Walker-Jonah DJ Krogstad 1990 Chloroquine resistance not linked to mdr-like genes in a Plasmodium falciparum cross Nature 345 253 255 10.1038/345253a0 1970614 1:CAS:528:DyaK3cXksFGksrY%3D (Pubitemid 20163055)
    • (1990) Nature , vol.345 , Issue.6272 , pp. 253-255
    • Wellems, T.E.1    Panton, L.J.2    Gluzman, I.Y.3    Do Rosario, V.E.4    Gwadz, R.W.5    Walker-Jonah, A.6    Krogstad, D.J.7
  • 84
    • 0346037346 scopus 로고    scopus 로고
    • The human reduced folate carrier gene is regulated by the AP2 and Sp1 transcription factor families and a functional 61-base pair polymorphism
    • DOI 10.1074/jbc.M208296200
    • JR Whetstine TL Witt LH Matherly 2002 The human reduced folate carrier gene is regulated by the AP2 and sp1 transcription factor families and a functional 61-base pair polymorphism J Biol Chem 277 43873 43880 10.1074/jbc.M208296200 12228234 1:CAS:528:DC%2BD38Xos1aksrs%3D (Pubitemid 36157810)
    • (2002) Journal of Biological Chemistry , vol.277 , Issue.46 , pp. 43873-43880
    • Whetstine, J.R.1    Witt, T.L.2    Matherly, L.H.3
  • 85
    • 77949617633 scopus 로고    scopus 로고
    • WHO. World Health Organization Geneva
    • WHO (2009) World malaria report 2009. World Health Organization, Geneva
    • (2009) World Malaria Report 2009
  • 86
    • 0029901640 scopus 로고    scopus 로고
    • Analysis of compositionally biased regions in sequence databases
    • DOI 10.1016/S0076-6879(96)66035-2
    • JC Wootton S Federhen 1996 Analysis of compositionally biased regions in sequence databases Meth Enzymol 266 554 571 10.1016/S0076-6879(96)66035-2 8743706 1:CAS:528:DyaK28Xltl2ntbw%3D (Pubitemid 26165889)
    • (1996) Methods in Enzymology , vol.266 , pp. 554-571
    • Wootton, J.C.1    Federhen, S.2
  • 87
    • 33747844624 scopus 로고    scopus 로고
    • BLAST: Improvements for better sequence analysis
    • DOI 10.1093/nar/gkl164
    • J Ye S McGinnis TL Madden 2006 BLAST: improvements for better sequence analysis Nucleic Acids Res 34 W6 W9 10.1093/nar/gkl164 16845079 1:CAS:528:DC%2BD28Xps1yitLc%3D (Pubitemid 44529725)
    • (2006) Nucleic Acids Research , vol.34 , Issue.WEB. SERV. ISS.
    • Ye, J.1    McGinnis, S.2    Madden, T.L.3


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