메뉴 건너뛰기




Volumn 9, Issue 10, 2010, Pages 4982-4991

Depletion of abundant plasma proteins and limitations of plasma proteomics

Author keywords

high abundance protein depletion; isoelectric focusing; multiple affinity removal system; plasma; shotgun proteomics

Indexed keywords

PLASMA PROTEIN;

EID: 77957371887     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr100646w     Document Type: Article
Times cited : (301)

References (32)
  • 1
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: History, character, and diagnostic prospects
    • Anderson, N. L.; Anderson, N. G. The human plasma proteome: history, character, and diagnostic prospects Mol. Cell. Proteomics 2002, 1 (11) 845-67
    • (2002) Mol. Cell. Proteomics , vol.1 , Issue.11 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 2
    • 0037387175 scopus 로고    scopus 로고
    • Multi-component immunoaffinity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome
    • Pieper, R.; Su, Q.; Gatlin, C. L.; Huang, S. T.; Anderson, N. L.; Steiner, S. Multi-component immunoaffinity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome Proteomics 2003, 3 (4) 422-32
    • (2003) Proteomics , vol.3 , Issue.4 , pp. 422-432
    • Pieper, R.1    Su, Q.2    Gatlin, C.L.3    Huang, S.T.4    Anderson, N.L.5    Steiner, S.6
  • 3
    • 63049092393 scopus 로고    scopus 로고
    • Affinity prefractionation for MS-based plasma proteomics
    • Pernemalm, M.; Lewensohn, R.; Lehtio, J. Affinity prefractionation for MS-based plasma proteomics Proteomics 2009, 9 (6) 1420-7
    • (2009) Proteomics , vol.9 , Issue.6 , pp. 1420-1427
    • Pernemalm, M.1    Lewensohn, R.2    Lehtio, J.3
  • 4
    • 13244279455 scopus 로고    scopus 로고
    • Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples
    • Bjorhall, K.; Miliotis, T.; Davidsson, P. Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples Proteomics 2005, 5 (1) 307-17
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 307-317
    • Bjorhall, K.1    Miliotis, T.2    Davidsson, P.3
  • 5
    • 36948998566 scopus 로고    scopus 로고
    • Proteomic analysis of human plasma proteins by two-dimensional gel electrophoresis and by antibody arrays following depletion of high-abundance proteins
    • Desrosiers, R. R.; Beaulieu, E.; Buchanan, M.; Beliveau, R. Proteomic analysis of human plasma proteins by two-dimensional gel electrophoresis and by antibody arrays following depletion of high-abundance proteins Cell. Biochem. Biophys. 2007, 49 (3) 182-95
    • (2007) Cell. Biochem. Biophys. , vol.49 , Issue.3 , pp. 182-195
    • Desrosiers, R.R.1    Beaulieu, E.2    Buchanan, M.3    Beliveau, R.4
  • 6
    • 23944524368 scopus 로고    scopus 로고
    • Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
    • Echan, L. A.; Tang, H. Y.; Ali-Khan, N.; Lee, K.; Speicher, D. W. Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma Proteomics 2005, 5 (13) 3292-303
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3292-3303
    • Echan, L.A.1    Tang, H.Y.2    Ali-Khan, N.3    Lee, K.4    Speicher, D.W.5
  • 7
    • 67749085910 scopus 로고    scopus 로고
    • Depletion of one, six, twelve or twenty major blood proteins before proteomic analysis: The more the better
    • Roche, S.; Tiers, L.; Provansal, M.; Seveno, M.; Piva, M. T.; Jouin, P.; Lehmann, S. Depletion of one, six, twelve or twenty major blood proteins before proteomic analysis: the more the better J. Proteomics 2009, 72 (6) 945-51
    • (2009) J. Proteomics , vol.72 , Issue.6 , pp. 945-951
    • Roche, S.1    Tiers, L.2    Provansal, M.3    Seveno, M.4    Piva, M.T.5    Jouin, P.6    Lehmann, S.7
  • 10
    • 33745090847 scopus 로고    scopus 로고
    • Depletion efficiency and recovery of trace markers from a multiparameter immunodepletion column
    • Brand, J.; Haslberger, T.; Zolg, W.; Pestlin, G.; Palme, S. Depletion efficiency and recovery of trace markers from a multiparameter immunodepletion column Proteomics 2006, 6 (11) 3236-42
    • (2006) Proteomics , vol.6 , Issue.11 , pp. 3236-3242
    • Brand, J.1    Haslberger, T.2    Zolg, W.3    Pestlin, G.4    Palme, S.5
  • 12
    • 33750682085 scopus 로고    scopus 로고
    • Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry
    • Liu, T.; Qian, W. J.; Mottaz, H. M.; Gritsenko, M. A.; Norbeck, A. D.; Moore, R. J.; Purvine, S. O.; Camp, D. G., 2nd; Smith, R. D. Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry Mol. Cell. Proteomics 2006, 5 (11) 2167-74
    • (2006) Mol. Cell. Proteomics , vol.5 , Issue.11 , pp. 2167-2174
    • Liu, T.1    Qian, W.J.2    Mottaz, H.M.3    Gritsenko, M.A.4    Norbeck, A.D.5    Moore, R.J.6    Purvine, S.O.7    Purvine, S.O.8    Smith, R.D.9
  • 14
    • 33644864034 scopus 로고    scopus 로고
    • Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
    • States, D. J.; Omenn, G. S.; Blackwell, T. W.; Fermin, D.; Eng, J.; Speicher, D. W.; Hanash, S. M. Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study Nat. Biotechnol. 2006, 24 (3) 333-8
    • (2006) Nat. Biotechnol. , vol.24 , Issue.3 , pp. 333-338
    • States, D.J.1    Omenn, G.S.2    Blackwell, T.W.3    Fermin, D.4    Eng, J.5    Speicher, D.W.6    Hanash, S.M.7
  • 18
    • 71049141298 scopus 로고    scopus 로고
    • Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
    • Sprung, R. W., Jr.; Brock, J. W.; Tanksley, J. P.; Li, M.; Washington, M. K.; Slebos, R. J.; Liebler, D. C. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis Mol. Cell. Proteomics 2009, 8 (8) 1988-98
    • (2009) Mol. Cell. Proteomics , vol.8 , Issue.8 , pp. 1988-1998
    • Sprung Jr., R.W.1    Brock, J.W.2    Tanksley, J.P.3    Li, M.4    Washington, M.K.5    Slebos, R.J.6    Liebler, D.C.7
  • 19
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wisniewski, J. R.; Zougman, A.; Nagaraj, N.; Mann, M. Universal sample preparation method for proteome analysis Nat. Methods 2009, 6 (5) 359-362
    • (2009) Nat. Methods , vol.6 , Issue.5 , pp. 359-362
    • Wisniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 21
    • 0036646079 scopus 로고    scopus 로고
    • Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column
    • Licklider, L. J.; Thoreen, C. C.; Peng, J.; Gygi, S. P. Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column Anal. Chem. 2002, 74 (13) 3076-83
    • (2002) Anal. Chem. , vol.74 , Issue.13 , pp. 3076-3083
    • Licklider, L.J.1    Thoreen, C.C.2    Peng, J.3    Gygi, S.P.4
  • 22
    • 33847401893 scopus 로고    scopus 로고
    • MyriMatch: Highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
    • Tabb, D. L.; Fernando, C. G.; Chambers, M. C. MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis J. Proteome Res. 2007, 6 (2) 654-61
    • (2007) J. Proteome Res. , vol.6 , Issue.2 , pp. 654-661
    • Tabb, D.L.1    Fernando, C.G.2    Chambers, M.C.3
  • 23
    • 34948874252 scopus 로고    scopus 로고
    • Proteomic parsimony through bipartite graph analysis improves accuracy and transparency
    • Zhang, B.; Chambers, M. C.; Tabb, D. L. Proteomic parsimony through bipartite graph analysis improves accuracy and transparency J. Proteome Res. 2007, 6 (9) 3549-57
    • (2007) J. Proteome Res. , vol.6 , Issue.9 , pp. 3549-3557
    • Zhang, B.1    Chambers, M.C.2    Tabb, D.L.3
  • 25
    • 24044513966 scopus 로고    scopus 로고
    • Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    • Elias, J. E.; Haas, W.; Faherty, B. K.; Gygi, S. P. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations Nat. Methods 2005, 2 (9) 667-75
    • (2005) Nat. Methods , vol.2 , Issue.9 , pp. 667-675
    • Elias, J.E.1    Haas, W.2    Faherty, B.K.3    Gygi, S.P.4
  • 26
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H.; Sadygov, R. G.; Yates, J. R., 3rd A model for random sampling and estimation of relative protein abundance in shotgun proteomics Anal. Chem. 2004, 76 (14) 4193-201
    • (2004) Anal. Chem. , vol.76 , Issue.14 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 27
    • 26444506068 scopus 로고    scopus 로고
    • Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling
    • Zybailov, B.; Coleman, M. K.; Florens, L.; Washburn, M. P. Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling Anal. Chem. 2005, 77 (19) 6218-24
    • (2005) Anal. Chem. , vol.77 , Issue.19 , pp. 6218-6224
    • Zybailov, B.1    Coleman, M.K.2    Florens, L.3    Washburn, M.P.4
  • 30
    • 84961006121 scopus 로고
    • The effect of certain glucides and polyelectrolytes on the combination of hemoglobin with serum haptoglobin and on its catalytic activity
    • Robert, L.; Bajic, V.; Jayle, M. F. The effect of certain glucides and polyelectrolytes on the combination of hemoglobin with serum haptoglobin and on its catalytic activity C. R. Hebd. Seances Acad. Sci. 1956, 242 (24) 2868-70
    • (1956) C. R. Hebd. Seances Acad. Sci. , vol.242 , Issue.24 , pp. 2868-2870
    • Robert, L.1    Bajic, V.2    Jayle, M.F.3
  • 31
    • 0035860751 scopus 로고    scopus 로고
    • Hydrophobic ligand binding by Zn-alpha 2-glycoprotein, a soluble fat-depleting factor related to major histocompatibility complex proteins
    • Kennedy, M. W.; Heikema, A. P.; Cooper, A.; Bjorkman, P. J.; Sanchez, L. M. Hydrophobic ligand binding by Zn-alpha 2-glycoprotein, a soluble fat-depleting factor related to major histocompatibility complex proteins J. Biol. Chem. 2001, 276 (37) 35008-13
    • (2001) J. Biol. Chem. , vol.276 , Issue.37 , pp. 35008-35013
    • Kennedy, M.W.1    Heikema, A.P.2    Cooper, A.3    Bjorkman, P.J.4    Sanchez, L.M.5
  • 32
    • 0028294626 scopus 로고
    • Binding of transforming growth factor-beta (TGF-beta) to pregnancy zone protein (PZP). Comparison to the TGF-beta-alpha 2-macroglobulin interaction
    • Philip, A.; Bostedt, L.; Stigbrand, T.; OConnor-McCourt, M. D. Binding of transforming growth factor-beta (TGF-beta) to pregnancy zone protein (PZP). Comparison to the TGF-beta-alpha 2-macroglobulin interaction Eur. J. Biochem. 1994, 221 (2) 687-93
    • (1994) Eur. J. Biochem. , vol.221 , Issue.2 , pp. 687-693
    • Philip, A.1    Bostedt, L.2    Stigbrand, T.3    Oconnor-Mccourt, M.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.