메뉴 건너뛰기




Volumn 5, Issue 6, 2006, Pages 1379-1387

Different immunoaffinity fractionation strategies to characterize the human plasma proteome

Author keywords

Anti human plasma albumin; Coimmunoprecipitation; Immunoaffinity separation; Mass spectrometry; Plasma; Proteomics; Two dimensional separation

Indexed keywords

ALBUMIN ANTIBODY; BIOLOGICAL MARKER; PLASMA PROTEIN; PROTEOME; SERUM ALBUMIN;

EID: 33744996070     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr0600024     Document Type: Article
Times cited : (151)

References (47)
  • 1
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome-History, character, and diagnostic prospects
    • Anderson, N. L.; Anderson, N. G. The human plasma proteome-History, character, and diagnostic prospects. Mol. Cell. Proteomics 2002, 1 (11), 845-867.
    • (2002) Mol. Cell. Proteomics , vol.1 , Issue.11 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 3
    • 0017721398 scopus 로고
    • High-resolution two-dimensional electrophoresis of human plasma proteins
    • Anderson, L.; Anderson, N. G. High-resolution two-dimensional electrophoresis of human plasma proteins. Proc. Natl. Acad. Sci. U.S.A. 1977, 74 (12), 5421-5425.
    • (1977) Proc. Natl. Acad. Sci. U.S.A. , vol.74 , Issue.12 , pp. 5421-5425
    • Anderson, L.1    Anderson, N.G.2
  • 5
    • 0033399737 scopus 로고    scopus 로고
    • Liquid chromatography and electrospray mass spectrometric mapping of peptides from human plasma filtrate
    • Raida, M.; Schulz-Knappe, P.; Heine, G.; Forssmann, W. G. Liquid chromatography and electrospray mass spectrometric mapping of peptides from human plasma filtrate. J. Am. Soc. Mass Spectrom. 1999, 10 (1), 45-54.
    • (1999) J. Am. Soc. Mass Spectrom. , vol.10 , Issue.1 , pp. 45-54
    • Raida, M.1    Schulz-Knappe, P.2    Heine, G.3    Forssmann, W.G.4
  • 6
    • 0035653810 scopus 로고    scopus 로고
    • Proteomic analysis of human plasma: Failure of centrifugal ultrafiltration to remove albumin and other high molecular weight proteins
    • Georgiou, H. M.; Rice, G. E.; Baker, M. S. Proteomic analysis of human plasma: failure of centrifugal ultrafiltration to remove albumin and other high molecular weight proteins. Proteomics 2001, 1 (12), 1503-1506.
    • (2001) Proteomics , vol.1 , Issue.12 , pp. 1503-1506
    • Georgiou, H.M.1    Rice, G.E.2    Baker, M.S.3
  • 8
    • 0142244515 scopus 로고    scopus 로고
    • An approach to remove albumin for the proteomic analysis of low abundance biomarkers in human serum
    • Ahmed, N.; Barker, G.; Oliva, K.; Garfin, D.; Talmadge, K.; Georgiou, H.; Quinn, M.; Rice, G. An approach to remove albumin for the proteomic analysis of low abundance biomarkers in human serum. Proteomics 2003, 3 (10), 1980-1987.
    • (2003) Proteomics , vol.3 , Issue.10 , pp. 1980-1987
    • Ahmed, N.1    Barker, G.2    Oliva, K.3    Garfin, D.4    Talmadge, K.5    Georgiou, H.6    Quinn, M.7    Rice, G.8
  • 9
    • 13244279455 scopus 로고    scopus 로고
    • Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples
    • Bjorhall, K.; Miliotis, T.; Davidsson, P. Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples. Proteomics 2005, 5 (1), 307-317.
    • (2005) Proteomics , vol.5 , Issue.1 , pp. 307-317
    • Bjorhall, K.1    Miliotis, T.2    Davidsson, P.3
  • 10
    • 17444383852 scopus 로고    scopus 로고
    • Depletion of high-abundant proteins in body fluids prior to liquid chromatography fourier transform ion cyclotron resonance mass spectrometry
    • Ramstrom, M.; Hagman, C.; Mitchell, J. K.; Derrick, P. J.; Hakansson, P.; Bergquist, J. Depletion of High-Abundant Proteins in Body Fluids Prior to Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. J. Proteome Res. 2005, 4 (2), 410-416.
    • (2005) J. Proteome Res. , vol.4 , Issue.2 , pp. 410-416
    • Ramstrom, M.1    Hagman, C.2    Mitchell, J.K.3    Derrick, P.J.4    Hakansson, P.5    Bergquist, J.6
  • 11
    • 0037345830 scopus 로고    scopus 로고
    • Depletion of the highly abundant protein albumin from human plasma using the Gradiflow
    • Rothemund, D. L.; Locke, V. L.; Liew, A.; Thomas, T. M.; Wasinger, V.; Rylatt, D. B. Depletion of the highly abundant protein albumin from human plasma using the Gradiflow. Proteomics 2003, 3 (3), 279-287.
    • (2003) Proteomics , vol.3 , Issue.3 , pp. 279-287
    • Rothemund, D.L.1    Locke, V.L.2    Liew, A.3    Thomas, T.M.4    Wasinger, V.5    Rylatt, D.B.6
  • 13
    • 0037387175 scopus 로고    scopus 로고
    • Multicomponent immunoafflnity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome
    • Pieper, R.; Su, Q.; Gatlin, C. L.; Huang, S. T.; Anderson, N. L.; Steiner, S. Multicomponent immunoafflnity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome. Proteomics 2003, 3 (4), 422-432.
    • (2003) Proteomics , vol.3 , Issue.4 , pp. 422-432
    • Pieper, R.1    Su, Q.2    Gatlin, C.L.3    Huang, S.T.4    Anderson, N.L.5    Steiner, S.6
  • 16
  • 17
    • 1242316198 scopus 로고    scopus 로고
    • Ultrahigh-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome
    • Shen, Y.; Jacobs, J. M.; Camp, D. G., 2nd; Fang, R.; Moore, R. J.; Smith, R. D.; Xiao, W.; Davis, R. W.; Tompkins, R. G. Ultrahigh-Efficiency Strong Cation Exchange LC/RPLC/MS/MS for High Dynamic Range Characterization of the Human Plasma Proteome. Anal. Chem. 2004, 76 (4), 1134-1144.
    • (2004) Anal. Chem. , vol.76 , Issue.4 , pp. 1134-1144
    • Shen, Y.1    Jacobs, J.M.2    Camp II, D.G.3    Fang, R.4    Moore, R.J.5    Smith, R.D.6    Xiao, W.7    Davis, R.W.8    Tompkins, R.G.9
  • 18
    • 17444421940 scopus 로고    scopus 로고
    • Human plasma proteome analysis by multidimensional chromatography prefractionation and linear ion trap mass spectrometry identification
    • Jin, W. H.; Dai, J.; Li, S. J.; Xia, Q. C.; Zou, H. F.; Zeng, R. Human Plasma Proteome Analysis by Multidimensional Chromatography Prefractionation and Linear Ion Trap Mass Spectrometry Identification. J. Proteome Res. 2005, 4 (2), 613-619.
    • (2005) J. Proteome Res. , vol.4 , Issue.2 , pp. 613-619
    • Jin, W.H.1    Dai, J.2    Li, S.J.3    Xia, Q.C.4    Zou, H.F.5    Zeng, R.6
  • 19
    • 0036424643 scopus 로고    scopus 로고
    • Identification of proteins in human cerebrospinal fluid using liquid-phase isoelectric focusing as a prefractionation step followed by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionisation mass spectrometry
    • Davidsson, P.; Folkesson S.; Christiansson, M.; Lindbjer, M.; Dellheden, B.; Blennow, K.; Westman-Brinkmalm, A. Identification of proteins in human cerebrospinal fluid using liquid-phase isoelectric focusing as a prefractionation step followed by two-dimensional gel electrophoresis and matrix-assisted laser desorption/ionisation mass spectrometry. Rapid Commun Mass Spectrom. 2002, 16 (22), 2083-2088.
    • (2002) Rapid Commun Mass Spectrom. , vol.16 , Issue.22 , pp. 2083-2088
    • Davidsson, P.1    Folkesson, S.2    Christiansson, M.3    Lindbjer, M.4    Dellheden, B.5    Blennow, K.6    Westman-Brinkmalm, A.7
  • 20
    • 2342575631 scopus 로고    scopus 로고
    • Comprehensive proteome analysis by chromatographic protein prefractionation
    • Lescuyer, P.; Hochstrasser, D. F.; Sanchez, J. C. Comprehensive proteome analysis by chromatographic protein prefractionation. Electrophoresis 2004, 25 (9), 1125-1135.
    • (2004) Electrophoresis , vol.25 , Issue.9 , pp. 1125-1135
    • Lescuyer, P.1    Hochstrasser, D.F.2    Sanchez, J.C.3
  • 22
    • 23944456877 scopus 로고    scopus 로고
    • Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project
    • Li, X.; Gong, Y.; Wang, Y.; Wu, S.; Cai, Y.; He, P.; Lu, Z.; Ying, W.; Zhang, Y.; Jiao, L.; He, H.; Zhang, Z.; He, F.; Zhao, X.; Qian, X. Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project. Proteomics 2005, 5 (13), 3423-3441.
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3423-3441
    • Li, X.1    Gong, Y.2    Wang, Y.3    Wu, S.4    Cai, Y.5    He, P.6    Lu, Z.7    Ying, W.8    Zhang, Y.9    Jiao, L.10    He, H.11    Zhang, Z.12    He, F.13    Zhao, X.14    Qian, X.15
  • 23
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.; McCormack, J. R.; Yates, J. R., III. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5 (11), 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , Issue.11 , pp. 976-989
    • Eng, J.1    McCormack, J.R.2    Yates III, J.R.3
  • 24
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for Large-Scale Protein Analysis: The yeast proteome
    • Peng, J.; Elias, J. E.; Thoreen, C. C.; Licklider, L. J.; Gygi, S. P. Evaluation of Multidimensional Chromatography Coupled with Tandem Mass Spectrometry (LC/LC-MS/MS) for Large-Scale Protein Analysis: The Yeast Proteome. J. Proteome Res. 2003, 2 (1), 43-50.
    • (2003) J. Proteome Res. , vol.2 , Issue.1 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 26
    • 0036209134 scopus 로고    scopus 로고
    • Qscore: An algorithm for evaluating SEQUEST database search results
    • Moore, R. E.; Young, M. K.; Lee, T. D. Qscore: an algorithm for evaluating SEQUEST database search results. J. Am. Soc. Mass Spectrom. 2002, 13 (4), 378-386.
    • (2002) J. Am. Soc. Mass Spectrom. , vol.13 , Issue.4 , pp. 378-386
    • Moore, R.E.1    Young, M.K.2    Lee, T.D.3
  • 27
    • 0036393898 scopus 로고    scopus 로고
    • DTASelect and contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
    • Tabb, D. L.; McDonald, W. H.; Yates, J. R., 3rd. DTASelect and Contrast: Tools for Assembling and Comparing Protein Identifications from Shotgun Proteomics J. Proteome Res. 2002, 1 (1), 21-26.
    • (2002) J. Proteome Res. , vol.1 , Issue.1 , pp. 21-26
    • Tabb, D.L.1    McDonald, W.H.2    Yates III, J.R.3
  • 29
  • 30
    • 0024416340 scopus 로고
    • Immunodepletion of albumin from human serum samples
    • Burgess-Cassler, A.; Johansen, J. J.; Kendrick, N. Immunodepletion of albumin from human serum samples. Clin Chim Acta. 1989, 183 (3), 359-365.
    • (1989) Clin Chim Acta. , vol.183 , Issue.3 , pp. 359-365
    • Burgess-Cassler, A.1    Johansen, J.J.2    Kendrick, N.3
  • 31
    • 0035975888 scopus 로고    scopus 로고
    • High-performance immunoaffinity chromatography, an immunoaffinity membrane for selective removal of plasma components, and safety evaluation of the latter system
    • Kojima, K. High-performance immunoaffinity chromatography, an immunoaffinity membrane for selective removal of plasma components, and safety evaluation of the latter system. J. Biochem. Biophys. Methods 2001, 49 (1-3), 241-251.
    • (2001) J. Biochem. Biophys. Methods , vol.49 , Issue.1-3 , pp. 241-251
    • Kojima, K.1
  • 32
    • 0034662907 scopus 로고    scopus 로고
    • Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
    • Gygi, S. P.; Corthals G. L.; Zhang, Y.; Rochon, Y.; Aebersold, R. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl. Acad. Sci. U.SA. 2000, 97 (17), 9390-9395.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , Issue.17 , pp. 9390-9395
    • Gygi, S.P.1    Corthals, G.L.2    Zhang, Y.3    Rochon, Y.4    Aebersold, R.5
  • 33
    • 14844360847 scopus 로고    scopus 로고
    • Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: The human proteome
    • Qian, W. J.; Liu, T.; Monroe, M. E.; Strittmatter, E. F.; Jacobs, J. M.; Kangas, L. J.; Petritis, K.; Camp, D. G., 2nd; Smith, R. D. Probability-Based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: The Human Proteome. J. Proteome Res. 2005, 4 (1), 53-62.
    • (2005) J. Proteome Res. , vol.4 , Issue.1 , pp. 53-62
    • Qian, W.J.1    Liu, T.2    Monroe, M.E.3    Strittmatter, E.F.4    Jacobs, J.M.5    Kangas, L.J.6    Petritis, K.7    Camp II, D.G.8    Smith, R.D.9
  • 34
    • 4444350538 scopus 로고    scopus 로고
    • Application of peptide LC retention time information in a discriminant function for peptide identification by tandem mass spectrometry
    • Strittmatter, E. F.; Kangas, L. J.; Petritis, K.; Mottaz, H. M.; Anderson, G. A.; Shen, Y.; Jacobs, J. M.; Camp, D. G.; Smith, R. D. Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry. J. Proteome Res. 2004, 3 (4), 760-769.
    • (2004) J. Proteome Res. , vol.3 , Issue.4 , pp. 760-769
    • Strittmatter, E.F.1    Kangas, L.J.2    Petritis, K.3    Mottaz, H.M.4    Anderson, G.A.5    Shen, Y.6    Jacobs, J.M.7    Camp, D.G.8    Smith, R.D.9
  • 35
    • 7044272787 scopus 로고    scopus 로고
    • Potential for false positive identifications from large databases through tandem mass spectrometry
    • Cargile, B. J.; Bundy, J. L.; Stephenson, J. L. Potential for false positive identifications from large databases through tandem mass spectrometry. J. Proteome Res. 2004, 3 (6), 1082-1085.
    • (2004) J. Proteome Res. , vol.3 , Issue.6 , pp. 1082-1085
    • Cargile, B.J.1    Bundy, J.L.2    Stephenson, J.L.3
  • 37
    • 0034062460 scopus 로고    scopus 로고
    • Signal suppression in electrospray ionization Fourier transform mass spectrometry of multicomponent samples
    • Sterner, J. L.; Johnston, M. V.; Nicol, G. R.; Ridge, D. P. Signal suppression in electrospray ionization Fourier transform mass spectrometry of multicomponent samples. J. Mass Spectrom. 2000, 35 (3), 385-391.
    • (2000) J. Mass Spectrom. , vol.35 , Issue.3 , pp. 385-391
    • Sterner, J.L.1    Johnston, M.V.2    Nicol, G.R.3    Ridge, D.P.4
  • 43
    • 0037345828 scopus 로고    scopus 로고
    • A simple affinity spin tube filter method for removing high-abundant common proteins or enriching low-abundant biomarkers for serum proteomic analysis
    • Wang, Y. Y.; Cheng, P.; Chan, D. W. A simple affinity spin tube filter method for removing high-abundant common proteins or enriching low-abundant biomarkers for serum proteomic analysis. Proteomics 2003, 3 (3), 243-248.
    • (2003) Proteomics , vol.3 , Issue.3 , pp. 243-248
    • Wang, Y.Y.1    Cheng, P.2    Chan, D.W.3
  • 46


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.