-
1
-
-
34447316738
-
The LOV domain: a chromophore module servicing multiple photoreceptors
-
Briggs W.R. The LOV domain: a chromophore module servicing multiple photoreceptors. J. Biomed. Sci. 2007, 14:499-504.
-
(2007)
J. Biomed. Sci.
, vol.14
, pp. 499-504
-
-
Briggs, W.R.1
-
2
-
-
1642274684
-
The PAS fold
-
Hefti M.H., Francoijs K.J., de Vries S.C., Dixon R., Vervoort J. The PAS fold. Eur. J. Biochem. 2004, 271:1198-1208.
-
(2004)
Eur. J. Biochem.
, vol.271
, pp. 1198-1208
-
-
Hefti, M.H.1
Francoijs, K.J.2
de Vries, S.C.3
Dixon, R.4
Vervoort, J.5
-
3
-
-
0028577744
-
Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry
-
Baca M., Borgstahl G.E., Boissinot M., Burke P.M., Williams D.R., Slater K.A., Getzoff E.D. Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry. Biochemistry 1994, 33:14369.
-
(1994)
Biochemistry
, vol.33
, pp. 14369
-
-
Baca, M.1
Borgstahl, G.E.2
Boissinot, M.3
Burke, P.M.4
Williams, D.R.5
Slater, K.A.6
Getzoff, E.D.7
-
4
-
-
0032573502
-
Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism
-
Christie J.M., Reymond P., Powell G.K., Bernasconi P., Raibekas A.A., Liscum E., Briggs W.R. Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism. Science 1998, 282:1698.
-
(1998)
Science
, vol.282
, pp. 1698
-
-
Christie, J.M.1
Reymond, P.2
Powell, G.K.3
Bernasconi, P.4
Raibekas, A.A.5
Liscum, E.6
Briggs, W.R.7
-
5
-
-
0036016438
-
Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch
-
Crosson S., Moffat K. Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch. Plant Cell 2002, 14:1067.
-
(2002)
Plant Cell
, vol.14
, pp. 1067
-
-
Crosson, S.1
Moffat, K.2
-
6
-
-
1142304289
-
Listening to the blue: the time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain
-
Losi A., Quest B., Gärtner W. Listening to the blue: the time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain. Photochem. Photobiol. Sci. 2003, 2:759-766.
-
(2003)
Photochem. Photobiol. Sci.
, vol.2
, pp. 759-766
-
-
Losi, A.1
Quest, B.2
Gärtner, W.3
-
7
-
-
0037435618
-
The LOV domain family: photoresponsive signaling modules coupled to diverse output domains
-
Crosson S., Rajagopal S., Moffat K. The LOV domain family: photoresponsive signaling modules coupled to diverse output domains. Biochemistry 2003, 42:2-10.
-
(2003)
Biochemistry
, vol.42
, pp. 2-10
-
-
Crosson, S.1
Rajagopal, S.2
Moffat, K.3
-
8
-
-
53749091743
-
Bacterial bilin- and flavin-binding photoreceptors
-
Losi A., Gärtner W. Bacterial bilin- and flavin-binding photoreceptors. Photochem. Photobiol. Sci. 2008, 7:1168-1178.
-
(2008)
Photochem. Photobiol. Sci.
, vol.7
, pp. 1168-1178
-
-
Losi, A.1
Gärtner, W.2
-
9
-
-
0036224807
-
First evidence for phototropin-related blue-light receptors in prokaryotes
-
Losi A., Polverini E., Quest B., Gärtner W. First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys. J. 2002, 82:2627-2634.
-
(2002)
Biophys. J.
, vol.82
, pp. 2627-2634
-
-
Losi, A.1
Polverini, E.2
Quest, B.3
Gärtner, W.4
-
10
-
-
3242747589
-
The bacterial counterparts of plant phototropins
-
Losi A. The bacterial counterparts of plant phototropins. Photochem. Photobiol. Sci. 2004, 3:566-574.
-
(2004)
Photochem. Photobiol. Sci.
, vol.3
, pp. 566-574
-
-
Losi, A.1
-
11
-
-
0141707094
-
Structural basis of a phototropin light switch
-
Harper S.M., Neil L.C., Gardner K.H. Structural basis of a phototropin light switch. Science 2003, 301:1541-1544.
-
(2003)
Science
, vol.301
, pp. 1541-1544
-
-
Harper, S.M.1
Neil, L.C.2
Gardner, K.H.3
-
12
-
-
34548546911
-
Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA
-
Möglich A., Moffat K. Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA. J. Mol. Biol. 2007, 373:112-126.
-
(2007)
J. Mol. Biol.
, vol.373
, pp. 112-126
-
-
Möglich, A.1
Moffat, K.2
-
13
-
-
0030581172
-
Role of adenosine nucleotides in the regulation of a stress-response transcription factor in Bacillus subtilis
-
Alper S., Dufour A., Garsin D.A., Duncan L., Losick R. Role of adenosine nucleotides in the regulation of a stress-response transcription factor in Bacillus subtilis. J. Mol. Biol. 1996, 260:165-177.
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 165-177
-
-
Alper, S.1
Dufour, A.2
Garsin, D.A.3
Duncan, L.4
Losick, R.5
-
14
-
-
0035724157
-
Genome-wide analysis of the general stress response in Bacillus subtilis
-
Price C.W., Fawcett P., Cérémonie H., Su N., Murphy C.K., Youngman P. Genome-wide analysis of the general stress response in Bacillus subtilis. Mol. Microbiol. 2001, 41:757-774.
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 757-774
-
-
Price, C.W.1
Fawcett, P.2
Cérémonie, H.3
Su, N.4
Murphy, C.K.5
Youngman, P.6
-
15
-
-
33749021097
-
Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA
-
Avila-Pérez M., Hellingwerf K.J., Kort R. Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA. J. Bacteriol. 2006, 188:6411-6414.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 6411-6414
-
-
Avila-Pérez, M.1
Hellingwerf, K.J.2
Kort, R.3
-
16
-
-
35848954992
-
SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria
-
Hecker M., Pané-Farré J., Völker U. SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria. Annu. Rev. Microbiol. 2007, 61:215-236.
-
(2007)
Annu. Rev. Microbiol.
, vol.61
, pp. 215-236
-
-
Hecker, M.1
Pané-Farré, J.2
Völker, U.3
-
17
-
-
0035141969
-
New family of regulators in the environmental signaling pathway which activates the general stress transcription factor sigma(B) of Bacillus subtilis
-
Akbar S., Gaidenko T.A., Kang C.M., O'Reilly M., Devine K.M., Price C.W. New family of regulators in the environmental signaling pathway which activates the general stress transcription factor sigma(B) of Bacillus subtilis. J. Bacteriol. 2001, 183:1329-1338.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1329-1338
-
-
Akbar, S.1
Gaidenko, T.A.2
Kang, C.M.3
O'Reilly, M.4
Devine, K.M.5
Price, C.W.6
-
18
-
-
77957264477
-
The Bacillus subtilis stressosome: a signal integration and transduction hub
-
Marles-Wright J., Lewis R.J. The Bacillus subtilis stressosome: a signal integration and transduction hub. Commun. Integr. Biol. 2008, 1:182-184.
-
(2008)
Commun. Integr. Biol.
, vol.1
, pp. 182-184
-
-
Marles-Wright, J.1
Lewis, R.J.2
-
19
-
-
69949148703
-
In vivo mutational analysis of YtvA from Bacillus subtilis: mechanism of light activation of the general stress response
-
Avila-Pérez M., Vreede J., Tang Y., Bende O., Losi A., Gärtner W., Hellingwerf K. In vivo mutational analysis of YtvA from Bacillus subtilis: mechanism of light activation of the general stress response. J. Biol. Chem. 2009, 284:24958-24964.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 24958-24964
-
-
Avila-Pérez, M.1
Vreede, J.2
Tang, Y.3
Bende, O.4
Losi, A.5
Gärtner, W.6
Hellingwerf, K.7
-
20
-
-
27544498857
-
Mutational effects on protein structural changes and interdomain interactions in the blue-light sensing LOV protein YtvA
-
Losi A., Ghiraldelli E., Jansen S., Gärtner W. Mutational effects on protein structural changes and interdomain interactions in the blue-light sensing LOV protein YtvA. Photochem. Photobiol. 2005, 81:1145-1152.
-
(2005)
Photochem. Photobiol.
, vol.81
, pp. 1145-1152
-
-
Losi, A.1
Ghiraldelli, E.2
Jansen, S.3
Gärtner, W.4
-
21
-
-
32044450659
-
Structural analysis of a HAMP domain: the linker region of the phototransducer in complex with sensory rhodopsin II
-
Bordignon E., Klare J.P., Doebber M., Wegener A.A., Martell S., Engelhard M., Steinhoff H.J. Structural analysis of a HAMP domain: the linker region of the phototransducer in complex with sensory rhodopsin II. J. Biol. Chem. 2005, 280:38767-38775.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 38767-38775
-
-
Bordignon, E.1
Klare, J.P.2
Doebber, M.3
Wegener, A.A.4
Martell, S.5
Engelhard, M.6
Steinhoff, H.J.7
-
22
-
-
11144344967
-
Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity
-
Harper S.M., Christie J.M., Gardner K.H. Disruption of the LOV-Jalpha helix interaction activates phototropin kinase activity. Biochemistry 2004, 43:16184-16192.
-
(2004)
Biochemistry
, vol.43
, pp. 16184-16192
-
-
Harper, S.M.1
Christie, J.M.2
Gardner, K.H.3
-
23
-
-
58549105950
-
Design and signaling mechanism of light-regulated histidine kinases
-
Möglich A., Ayers R.A., Moffat K. Design and signaling mechanism of light-regulated histidine kinases. J. Mol. Biol. 2009, 385:1433-1444.
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1433-1444
-
-
Möglich, A.1
Ayers, R.A.2
Moffat, K.3
-
24
-
-
38349092260
-
Molecular structure and regulation of phototropin kinase by blue light
-
Tokutomi S., Matsuoka D., Zikihara K. Molecular structure and regulation of phototropin kinase by blue light. Biochim. Biophys. Acta 2008, 1784:133-142.
-
(2008)
Biochim. Biophys. Acta
, vol.1784
, pp. 133-142
-
-
Tokutomi, S.1
Matsuoka, D.2
Zikihara, K.3
-
25
-
-
47849125383
-
Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2
-
Nakasako M., Zikihara K., Matsuoka D., Katsura H., Tokutomi S. Structural basis of the LOV1 dimerization of Arabidopsis phototropins 1 and 2. J. Mol. Biol. 2008, 381:718-733.
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 718-733
-
-
Nakasako, M.1
Zikihara, K.2
Matsuoka, D.3
Katsura, H.4
Tokutomi, S.5
-
26
-
-
0242571958
-
Small-angle scattering studies of biological macromolecules
-
Svergun D.I., Koch M.H.J. Small-angle scattering studies of biological macromolecules. Rep. Prog. Phys. 2003, 66:1735-1782.
-
(2003)
Rep. Prog. Phys.
, vol.66
, pp. 1735-1782
-
-
Svergun, D.I.1
Koch, M.H.J.2
-
27
-
-
0001209134
-
Analytical ultracentrifugation as a contemporary biomolecular research tool
-
Cole J., Hansen J. Analytical ultracentrifugation as a contemporary biomolecular research tool. J. Biomol. Tech. 1999, 10:163-176.
-
(1999)
J. Biomol. Tech.
, vol.10
, pp. 163-176
-
-
Cole, J.1
Hansen, J.2
-
29
-
-
0042855798
-
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
-
Schuck P. On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Anal. Biochem. 2003, 320:104-124.
-
(2003)
Anal. Biochem.
, vol.320
, pp. 104-124
-
-
Schuck, P.1
-
30
-
-
0037701585
-
Uniqueness of ab initio shape determination in small-angle scattering
-
Volkov V.V., Svergun D.I. Uniqueness of ab initio shape determination in small-angle scattering. J. Appl. Crystallogr. 2003, 36:860-864.
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 860-864
-
-
Volkov, V.V.1
Svergun, D.I.2
-
31
-
-
33845993618
-
Conformational analysis of the blue-light sensing protein YtvA reveals a competitive interface for LOV-LOV dimerization and interdomain interactions
-
Buttani V., Losi A., Eggert T., Krauss U., Jaeger K.E., Cao Z., Gärtner W. Conformational analysis of the blue-light sensing protein YtvA reveals a competitive interface for LOV-LOV dimerization and interdomain interactions. Photochem. Photobiol. Sci. 2007, 6:41-49.
-
(2007)
Photochem. Photobiol. Sci.
, vol.6
, pp. 41-49
-
-
Buttani, V.1
Losi, A.2
Eggert, T.3
Krauss, U.4
Jaeger, K.E.5
Cao, Z.6
Gärtner, W.7
-
32
-
-
53349176566
-
Molecular architecture of the "stressosome," a signal integration and transduction hub
-
Marles-Wright J., Grant T., Delumeau O., van Duinen G., Firbank S.J., Lewis P.J., et al. Molecular architecture of the "stressosome," a signal integration and transduction hub. Science 2008, 322:92-96.
-
(2008)
Science
, vol.322
, pp. 92-96
-
-
Marles-Wright, J.1
Grant, T.2
Delumeau, O.3
van Duinen, G.4
Firbank, S.J.5
Lewis, P.J.6
-
33
-
-
34547576129
-
Photochemical intermediates of Arabidopsis phototropin 2 LOV domains associated with conformational changes
-
Eitoku T., Nakasone Y., Zikihara K., Matsuoka D., Tokutomi S., Terazima M. Photochemical intermediates of Arabidopsis phototropin 2 LOV domains associated with conformational changes. J. Mol. Biol. 2007, 371:1290-1303.
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 1290-1303
-
-
Eitoku, T.1
Nakasone, Y.2
Zikihara, K.3
Matsuoka, D.4
Tokutomi, S.5
Terazima, M.6
-
34
-
-
33847164436
-
Dynamics of conformational changes of Arabidopsis phototropin 1 LOV2 with the linker domain
-
Nakasone Y., Eitoku T., Matsuoka D., Tokutomi S., Terazima M. Dynamics of conformational changes of Arabidopsis phototropin 1 LOV2 with the linker domain. J. Mol. Biol. 2007, 367:432-442.
-
(2007)
J. Mol. Biol.
, vol.367
, pp. 432-442
-
-
Nakasone, Y.1
Eitoku, T.2
Matsuoka, D.3
Tokutomi, S.4
Terazima, M.5
-
35
-
-
34247184631
-
A LOV story: the signaling state of the phot1 LOV2 photocycle involves chromophore-triggered protein structure relaxation, as probed by far-UV time-resolved optical rotatory dispersion spectroscopy
-
Chen E., Swartz T.E., Bogomolni R.A., Kliger D.S. A LOV story: the signaling state of the phot1 LOV2 photocycle involves chromophore-triggered protein structure relaxation, as probed by far-UV time-resolved optical rotatory dispersion spectroscopy. Biochemistry 2007, 46:4619-4624.
-
(2007)
Biochemistry
, vol.46
, pp. 4619-4624
-
-
Chen, E.1
Swartz, T.E.2
Bogomolni, R.A.3
Kliger, D.S.4
-
36
-
-
25444492902
-
Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation
-
Eitoku T., Nakasone Y., Matsuoka D., Tokutomi S., Terazima M. Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation. J. Am. Chem. Soc. 2005, 127:13238-13244.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 13238-13244
-
-
Eitoku, T.1
Nakasone, Y.2
Matsuoka, D.3
Tokutomi, S.4
Terazima, M.5
-
37
-
-
23244455562
-
Global rigid body modeling of macromolecular complexes against small-angle scattering data
-
Petoukhov M.V., Svergun D.I. Global rigid body modeling of macromolecular complexes against small-angle scattering data. Biophys. J. 2005, 89:1237-1250.
-
(2005)
Biophys. J.
, vol.89
, pp. 1237-1250
-
-
Petoukhov, M.V.1
Svergun, D.I.2
-
38
-
-
0025085655
-
Ligation-independent cloning of PCR products (LIC-PCR)
-
Aslanidis C., de Jong P.J. Ligation-independent cloning of PCR products (LIC-PCR). Nucleic Acids Res. 1990, 18:6069-6074.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6069-6074
-
-
Aslanidis, C.1
de Jong, P.J.2
-
39
-
-
14344261574
-
Chromophore exchange in the LOV2 domain of the plant photoreceptor phototropin1 from oat
-
Dürr H., Salomon M., Rüdiger W. Chromophore exchange in the LOV2 domain of the plant photoreceptor phototropin1 from oat. Biochemistry 2005, 44:3050-3055.
-
(2005)
Biochemistry
, vol.44
, pp. 3050-3055
-
-
Dürr, H.1
Salomon, M.2
Rüdiger, W.3
-
40
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling
-
Schuck P. Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J. 2000, 78:1606-1619.
-
(2000)
Biophys. J.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
41
-
-
1442274756
-
Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition
-
Vistica J., Dam J., Balbo A., Yikilmaz E., Mariuzza R.A., Rouault T.A., Schuck P. Sedimentation equilibrium analysis of protein interactions with global implicit mass conservation constraints and systematic noise decomposition. Anal. Biochem. 2004, 326:234-256.
-
(2004)
Anal. Biochem.
, vol.326
, pp. 234-256
-
-
Vistica, J.1
Dam, J.2
Balbo, A.3
Yikilmaz, E.4
Mariuzza, R.A.5
Rouault, T.A.6
Schuck, P.7
-
42
-
-
70350507764
-
-
Alliance Protein Laboratories, Thousand Oaks, CA, USA
-
Hayes D., Laue T., Philo J. Program Sednterp: Sedimentation Interpretation Program 1995, Alliance Protein Laboratories, Thousand Oaks, CA, USA.
-
(1995)
Program Sednterp: Sedimentation Interpretation Program
-
-
Hayes, D.1
Laue, T.2
Philo, J.3
-
43
-
-
34248347847
-
Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg
-
Roessle M.W., Klaering R., Ristau U., Robrahn B., Jahn D., Gehrmann T., et al. Upgrade of the small-angle X-ray scattering beamline X33 at the European Molecular Biology Laboratory, Hamburg. J. Appl. Crystallogr. 2006, 40:s190-s194.
-
(2006)
J. Appl. Crystallogr.
, vol.40
-
-
Roessle, M.W.1
Klaering, R.2
Ristau, U.3
Robrahn, B.4
Jahn, D.5
Gehrmann, T.6
-
44
-
-
0141484613
-
PRIMUS: a Windows PC-based system for small-angle scattering data analysis
-
Konarev P.V., Volkov V.V., Sokolova A.V., Koch H.J., Svergun D.I. PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J. Appl. Crystallogr. 2003, 36:1277-1282.
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, H.J.4
Svergun, D.I.5
-
45
-
-
0001498978
-
La diffraction des rayons X aux très faibles angles: applications à l'etude des phénomènes ultra-microscopiques
-
Guinier A. La diffraction des rayons X aux très faibles angles: applications à l'etude des phénomènes ultra-microscopiques. Ann. Phys. 1939, 12:161-237.
-
(1939)
Ann. Phys.
, vol.12
, pp. 161-237
-
-
Guinier, A.1
-
46
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
Svergun D.I. Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J. Appl. Crystallogr. 1992, 25:495-503.
-
(1992)
J. Appl. Crystallogr.
, vol.25
, pp. 495-503
-
-
Svergun, D.I.1
-
47
-
-
77957254797
-
-
X-ray low angle scattering of dense colloid systems, part II. Kolloid-Z. 125, 51-57, 108-122
-
Porod G. (1952). X-ray low angle scattering of dense colloid systems, part II. Kolloid-Z. 125, 51-57, 108-122.
-
(1952)
-
-
Porod, G.1
-
48
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun D.I. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys. J. 1999, 76:2879-2886.
-
(1999)
Biophys. J.
, vol.76
, pp. 2879-2886
-
-
Svergun, D.I.1
-
49
-
-
62649139615
-
DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
-
Franke D., Svergun D.I. DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering. J. Appl. Crystallogr. 2009, 42:342-346.
-
(2009)
J. Appl. Crystallogr.
, vol.42
, pp. 342-346
-
-
Franke, D.1
Svergun, D.I.2
-
50
-
-
0035010533
-
Determination of domain structure of proteins from X-ray solution scattering
-
Svergun D.I., Petoukhov M.V., Koch M.H. Determination of domain structure of proteins from X-ray solution scattering. Biophys. J. 2001, 80:2946-2953.
-
(2001)
Biophys. J.
, vol.80
, pp. 2946-2953
-
-
Svergun, D.I.1
Petoukhov, M.V.2
Koch, M.H.3
-
51
-
-
0035124442
-
Automated matching of high- and low-resolution structural models
-
Kozin M.B., Svergun D.I. Automated matching of high- and low-resolution structural models. J. Appl. Crystallogr. 2001, 34:33-41.
-
(2001)
J. Appl. Crystallogr.
, vol.34
, pp. 33-41
-
-
Kozin, M.B.1
Svergun, D.I.2
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