-
1
-
-
0035862330
-
Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection
-
Altfeld, M., E. S. Rosenberg, R. Shankarappa, J. S. Mukherjee, F. M. Hecht, R. L. Eldridge, M. M. Addo, S. H. Poon, M. N. Phillips, G. K. Robbins, P. E. Sax, S. Boswell, J. O. Kahn, C. Brander, P. J. Goulder, J. A. Levy, J. I. Mullins, and B. D. Walker. 2001. Cellular immune responses and viral diversity in individuals treated during acute and early HIV-1 infection. J. Exp. Med. 193:169-180.
-
(2001)
J. Exp. Med.
, vol.193
, pp. 169-180
-
-
Altfeld, M.1
Rosenberg, E.S.2
Shankarappa, R.3
Mukherjee, J.S.4
Hecht, F.M.5
Eldridge, R.L.6
Addo, M.M.7
Poon, S.H.8
Phillips, M.N.9
Robbins, G.K.10
Sax, P.E.11
Boswell, S.12
Kahn, J.O.13
Brander, C.14
Goulder, P.J.15
Levy, J.A.16
Mullins, J.I.17
Walker, B.D.18
-
2
-
-
33745245733
-
+ T cells
-
+ T cells. J. Virol. 80:6441-6457.
-
(2006)
J. Virol.
, vol.80
, pp. 6441-6457
-
-
Bailey, J.R.1
Sedaghat, A.R.2
Kieffer, T.3
Brennan, T.4
Lee, P.K.5
Wind-Rotolo, M.6
Haggerty, C.M.7
Kamireddi, A.R.8
Liu, Y.9
Lee, J.10
Persaud, D.11
Gallant, J.E.12
Cofrancesco Jr., J.13
Quinn, T.C.14
Wilke, C.O.15
Ray, S.C.16
Siliciano, J.D.17
Nettles, R.E.18
Siliciano, R.F.19
-
3
-
-
0036382905
-
Compartmentalization of HIV-1 between breast milk and blood of HIV-infected mothers
-
Becquart, P., N. Chomont, P. Roques, A. Ayouba, M. D. Kazatchkine, L. Belec, and H. Hocini. 2002. Compartmentalization of HIV-1 between breast milk and blood of HIV-infected mothers. Virology 300:109-117.
-
(2002)
Virology
, vol.300
, pp. 109-117
-
-
Becquart, P.1
Chomont, N.2
Roques, P.3
Ayouba, A.4
Kazatchkine, M.D.5
Belec, L.6
Hocini, H.7
-
4
-
-
34249071126
-
Diversity of HIV-1 RNA and DNA in breast milk from HIV-1-infected mothers
-
DOI 10.1016/j.virol.2007.02.003, PII S0042682207000888
-
Becquart, P., V. Courgnaud, J. Willumsen, and P. Van de Perre. 2007. Diversity of HIV-1 RNA and DNA in breast milk from HIV-1-infected mothers. Virology 363:256-260. (Pubitemid 46779067)
-
(2007)
Virology
, vol.363
, Issue.2
, pp. 256-260
-
-
Becquart, P.1
Courgnaud, V.2
Willumsen, J.3
Van De Perre, P.4
-
5
-
-
77649211938
-
Extended-dose nevirapine to 6 weeks of age for infants to prevent HIV transmission via breastfeeding in Ethiopia, India, and Uganda: An analysis of three randomised controlled trials
-
Bedri, A., B. Gudetta, A. Isehak, S. Kumbi, S. Lulseged, Y. Mengistu, A. V. Bhore, R. Bhosale, V. Varadhrajan, N. Gupte, J. Sastry, N. Suryavanshi, S. Tripathy, F. Mmiro, M. Mubiru, C. Onyango, A. Taylor, P. Musoke, C. Nakabiito, A. Abashawl, R. Adamu, G. Antelman, R. C. Bollinger, P. Bright, M. A. Chaudhary, J. Coberly, L. Guay, M. G. Fowler, A. Gupta, E. Hassen, J. B. Jackson, L. H. Moulton, U. Nayak, S. B. Omer, L. Propper, M. Ram, V. Rexroad, A. J. Ruff, A. Shankar, and S. Zwerski. 2008. Extended-dose nevirapine to 6 weeks of age for infants to prevent HIV transmission via breastfeeding in Ethiopia, India, and Uganda: an analysis of three randomised controlled trials. Lancet 372:300-313.
-
(2008)
Lancet
, vol.372
, pp. 300-313
-
-
Bedri, A.1
Gudetta, B.2
Isehak, A.3
Kumbi, S.4
Lulseged, S.5
Mengistu, Y.6
Bhore, A.V.7
Bhosale, R.8
Varadhrajan, V.9
Gupte, N.10
Sastry, J.11
Suryavanshi, N.12
Tripathy, S.13
Mmiro, F.14
Mubiru, M.15
Onyango, C.16
Taylor, A.17
Musoke, P.18
Nakabiito, C.19
Abashawl, A.20
Adamu, R.21
Antelman, G.22
Bollinger, R.C.23
Bright, P.24
Chaudhary, M.A.25
Coberly, J.26
Guay, L.27
Fowler, M.G.28
Gupta, A.29
Hassen, E.30
Jackson, J.B.31
Moulton, L.H.32
Nayak, U.33
Omer, S.B.34
Propper, L.35
Ram, M.36
Rexroad, V.37
Ruff, A.J.38
Shankar, A.39
Zwerski, S.40
more..
-
6
-
-
0025089978
-
Rapid and simple method for purification of nucleic acids
-
Boom, R., C. Sol, M. Salimans, C. Jansen, P. W.-V. Dillen, and J. V. d. Noordaa. 1990. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28:495-503.
-
(1990)
J. Clin. Microbiol.
, vol.28
, pp. 495-503
-
-
Boom, R.1
Sol, C.2
Salimans, M.3
Jansen, C.4
Dillen, P.W.-V.5
Noordaa, J.V.D.6
-
7
-
-
70349626976
-
Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations
-
Bull, M., G. Learn, I. Genowati, J. McKernan, J. Hitti, D. Lockhart, K. Tapia, S. Holte, J. Dragavon, R. Coombs, J. Mullins, and L. Frenkel. 2009. Compartmentalization of HIV-1 within the female genital tract is due to monotypic and low-diversity variants not distinct viral populations. PLoS One 4:e7122.
-
(2009)
PLoS One
, vol.4
-
-
Bull, M.1
Learn, G.2
Genowati, I.3
McKernan, J.4
Hitti, J.5
Lockhart, D.6
Tapia, K.7
Holte, S.8
Dragavon, J.9
Coombs, R.10
Mullins, J.11
Frenkel, L.12
-
8
-
-
66149128413
-
Monotypic human immunodeficiency virus type 1 genotypes across the uterine cervix and in blood suggest proliferation of cells with provirus
-
Bull, M. E., G. H. Learn, S. McElhone, J. Hitti, D. Lockhart, S. Holte, J. Dragavon, R. W. Coombs, J. I. Mullins, and L. M. Frenkel. 2009. Monotypic human immunodeficiency virus type 1 genotypes across the uterine cervix and in blood suggest proliferation of cells with provirus. J. Virol. 83:6020-6028.
-
(2009)
J. Virol.
, vol.83
, pp. 6020-6028
-
-
Bull, M.E.1
Learn, G.H.2
McElhone, S.3
Hitti, J.4
Lockhart, D.5
Holte, S.6
Dragavon, J.7
Coombs, R.W.8
Mullins, J.I.9
Frenkel, L.M.10
-
9
-
-
34447630990
-
Methods used to examine compartmentalization of viral populations between the genital tract and peripheral blood
-
Author's reply, 196:494-495
-
Bull, M. E., G. H. Learn, J. I. Mullins, and L. M. Frenkel. 2007. Methods used to examine compartmentalization of viral populations between the genital tract and peripheral blood. J. Infect. Dis. 196:493-494. (Author's reply, 196:494-495.)
-
(2007)
J. Infect. Dis.
, vol.196
, pp. 493-494
-
-
Bull, M.E.1
Learn, G.H.2
Mullins, J.I.3
Frenkel, L.M.4
-
10
-
-
0031975192
-
Human immunodeficiency virus type 1 populations in blood and semen
-
Delwart, E. L., J. I. Mullins, P. Gupta, G. H. Learn, Jr., M. Holodniy, D. Katzenstein, B. D. Walker, and M. K. Singh. 1998. Human immunodeficiency virus type 1 populations in blood and semen. J. Virol. 72:617-623.
-
(1998)
J. Virol.
, vol.72
, pp. 617-623
-
-
Delwart, E.L.1
Mullins, J.I.2
Gupta, P.3
Learn Jr., G.H.4
Holodniy, M.5
Katzenstein, D.6
Walker, B.D.7
Singh, M.K.8
-
11
-
-
77954067056
-
DIVEIN: A web server to analyze phylogenies, sequence divergence, diversity, and informative sites
-
Deng, W., B. S. Maust, D. C. Nickle, G. H. Learn, Y. Liu, L. Heath, S. L. K. Pond, and J. I. Mullins. 2010. DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites. Biotechniques 48:405-408.
-
(2010)
Biotechniques
, vol.48
, pp. 405-408
-
-
Deng, W.1
Maust, B.S.2
Nickle, D.C.3
Learn, G.H.4
Liu, Y.5
Heath, L.6
Pond, S.L.K.7
Mullins, J.I.8
-
12
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond, A. J., G. K. Nicholls, A. G. Rodrigo, and W. Solomon. 2002. Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161:1307-1320.
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
13
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
14
-
-
0026207466
-
DNA polymerase fidelity and the polymerase chain reaction
-
Eckert, R. A., and T. A. Kunkel. 1991. DNA polymerase fidelity and the polymerase chain reaction. PCR Methods Appl. 1:17-24.
-
(1991)
PCR Methods Appl.
, vol.1
, pp. 17-24
-
-
Eckert, R.A.1
Kunkel, T.A.2
-
15
-
-
34547630738
-
Laboratory indicators of mastitis are not associated with elevated HIV-1 DNA loads or predictive of HIV-1 RNA loads in breast milk
-
Gantt, S., A. K. Shetty, K. D. Seidel, K. Matasa, G. Musingwini, G. Woelk, L. S. Zijenah, D. A. Katzenstein, and L. M. Frenkel. 2007. Laboratory indicators of mastitis are not associated with elevated HIV-1 DNA loads or predictive of HIV-1 RNA loads in breast milk. J. Infect. Dis. 196:570-576.
-
(2007)
J. Infect. Dis.
, vol.196
, pp. 570-576
-
-
Gantt, S.1
Shetty, A.K.2
Seidel, K.D.3
Matasa, K.4
Musingwini, G.5
Woelk, G.6
Zijenah, L.S.7
Katzenstein, D.A.8
Frenkel, L.M.9
-
16
-
-
0033775185
-
Physiology, immunology, and disease transmission in human breast milk
-
Georgeson, J. C., and S. M. Filteau. 2000. Physiology, immunology, and disease transmission in human breast milk. AIDS Patient Care STDS. 14: 533-539.
-
(2000)
AIDS Patient Care STDS
, vol.14
, pp. 533-539
-
-
Georgeson, J.C.1
Filteau, S.M.2
-
17
-
-
0033523454
-
Intrapartum and neonatal single-dose nevirapine compared with zidovudine for prevention of mother-to-child transmission of HIV-1 in Kampala, Uganda: HIVNET 012 randomised trial
-
Guay, L. A., P. Musoke, T. Fleming, D. Bagenda, M. Allen, C. Nakabiito, J. Sherman, P. Bakaki, C. Ducar, M. Deseyve, L. Emel, M. Mirochnick, M. G. Fowler, L. Mofenson, P. Miotti, K. Dransfield, D. Bray, F. Mmiro, and J. B. Jackson. 1999. Intrapartum and neonatal single-dose nevirapine compared with zidovudine for prevention of mother-to-child transmission of HIV-1 in Kampala, Uganda: HIVNET 012 randomised trial. Lancet 354:795-802.
-
(1999)
Lancet
, vol.354
, pp. 795-802
-
-
Guay, L.A.1
Musoke, P.2
Fleming, T.3
Bagenda, D.4
Allen, M.5
Nakabiito, C.6
Sherman, J.7
Bakaki, P.8
Ducar, C.9
Deseyve, M.10
Emel, L.11
Mirochnick, M.12
Fowler, M.G.13
Mofenson, L.14
Miotti, P.15
Dransfield, K.16
Bray, D.17
Mmiro, F.18
Jackson, J.B.19
-
18
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
19
-
-
70349436097
-
Effect of a point-of-use water treatment and safe water storage intervention on diarrhea in infants of HIV-infected mothers
-
Harris, J. R., S. K. Greene, T. K. Thomas, R. Ndivo, J. Okanda, R. Masaba, I. Nyangau, M. C. Thigpen, R. M. Hoekstra, and R. E. Quick. 2009. Effect of a point-of-use water treatment and safe water storage intervention on diarrhea in infants of HIV-infected mothers. J. Infect. Dis. 200:1186-1193.
-
(2009)
J. Infect. Dis.
, vol.200
, pp. 1186-1193
-
-
Harris, J.R.1
Greene, S.K.2
Thomas, T.K.3
Ndivo, R.4
Okanda, J.5
Masaba, R.6
Nyangau, I.7
Thigpen, M.C.8
Hoekstra, R.M.9
Quick, R.E.10
-
20
-
-
77954994113
-
Restriction of HIV-1 genotypes in breast milk does not account for the population transmission genetic bottleneck that occurs following transmission
-
Heath, L., S. Conway, L. Jones, K. Semrau, K. Nakamura, J. Walter, W. D. Decker, J. Hong, T. Chen, M. Heil, M. Sinkala, C. Kankasa, D. M. Thea, L. Kuhn, J. I. Mullins, and G. M. Aldrovandi. 2010. Restriction of HIV-1 genotypes in breast milk does not account for the population transmission genetic bottleneck that occurs following transmission. PLoS One 5:e10213.
-
(2010)
PLoS One
, vol.5
-
-
Heath, L.1
Conway, S.2
Jones, L.3
Semrau, K.4
Nakamura, K.5
Walter, J.6
Decker, W.D.7
Hong, J.8
Chen, T.9
Heil, M.10
Sinkala, M.11
Kankasa, C.12
Thea, D.M.13
Kuhn, L.14
Mullins, J.I.15
Aldrovandi, G.M.16
-
21
-
-
70349204366
-
Evidence for limited genetic compartmentalization of HIV-1 between lung and blood
-
Heath, L., A. Fox, J. McClure, K. Diem, A. B. van 't Wout, H. Zhao, D. R. Park, J. T. Schouten, H. L. Twigg, L. Corey, J. I. Mullins, and J. E. Mittler. 2009. Evidence for limited genetic compartmentalization of HIV-1 between lung and blood. PLoS One 4:e6949.
-
(2009)
PLoS One
, vol.4
-
-
Heath, L.1
Fox, A.2
McClure, J.3
Diem, K.4
Van't Wout, A.B.5
Zhao, H.6
Park, D.R.7
Schouten, J.T.8
Twigg, H.L.9
Corey, L.10
Mullins, J.I.11
Mittler, J.E.12
-
22
-
-
7444222859
-
HIV-1 populations in blood and breast milk are similar
-
Henderson, G. J., N. G. Hoffman, L. H. Ping, S. A. Fiscus, I. F. Hoffman, K. M. Kitrinos, T. Banda, F. E. Martinson, P. N. Kazembe, D. A. Chilongozi, M. S. Cohen, and R. Swanstrom. 2004. HIV-1 populations in blood and breast milk are similar. Virology 330:295-303.
-
(2004)
Virology
, vol.330
, pp. 295-303
-
-
Henderson, G.J.1
Hoffman, N.G.2
Ping, L.H.3
Fiscus, S.A.4
Hoffman, I.F.5
Kitrinos, K.M.6
Banda, T.7
Martinson, F.E.8
Kazembe, P.N.9
Chilongozi, D.A.10
Cohen, M.S.11
Swanstrom, R.12
-
23
-
-
77957191492
-
A bioinformatic predictor of coreceptor usage correlates with markers of disease progression and supports the gradual evolution of X4 virus via R5X4 intermediates
-
poster 498. Abstr.
-
Jensen, M. A., G. S. Gottlieb, A. B. van 't Wout, F. S. Li, D. C. Nickle, K. Wong, H. X. He, S. McLaughlin, R. Shankarappa, J. B. Margolick, and J. I. Mullins. 2003. A bioinformatic predictor of coreceptor usage correlates with markers of disease progression and supports the gradual evolution of X4 virus via R5X4 intermediates, poster 498. Abstr. 10th Conf. Retroviruses Opportunistic Infect., Boston, MA.
-
(2003)
10th Conf. Retroviruses Opportunistic Infect., Boston, MA
-
-
Jensen, M.A.1
Gottlieb, G.S.2
Van't Wout, A.B.3
Li, F.S.4
Nickle, D.C.5
Wong, K.6
He, H.X.7
McLaughlin, S.8
Shankarappa, R.9
Margolick, J.B.10
Mullins, J.I.11
-
24
-
-
0035863548
-
Correlates of mother-to-child human immunodeficiency virus type 1 (HIV-1) transmission: Association with maternal plasma HIV-1 RNA load, genital HIV-1 DNA shedding, and breast infections
-
John, G. C., R. W. Nduati, D. A. Mbori-Ngacha, B. A. Richardson, D. Panteleeff, A. Mwatha, J. Overbaugh, J. Bwayo, J. O. Ndinya-Achola, and J. K. Kreiss. 2001. Correlates of mother-to-child human immunodeficiency virus type 1 (HIV-1) transmission: association with maternal plasma HIV-1 RNA load, genital HIV-1 DNA shedding, and breast infections. J. Infect. Dis. 183:206-212.
-
(2001)
J. Infect. Dis.
, vol.183
, pp. 206-212
-
-
John, G.C.1
Nduati, R.W.2
Mbori-Ngacha, D.A.3
Richardson, B.A.4
Panteleeff, D.5
Mwatha, A.6
Overbaugh, J.7
Bwayo, J.8
Ndinya-Achola, J.O.9
Kreiss, J.K.10
-
25
-
-
47049086842
-
Prevention of mother-to-child transmission of HIV-1 through breast-feeding by treating infants prophylactically with lamivudine in Dar es Salaam, Tanzania: The Mitra Study
-
Kilewo, C., K. Karlsson, A. Massawe, E. Lyamuya, A. Swai, F. Mhalu, and G. Biberfeld. 2008. Prevention of mother-to-child transmission of HIV-1 through breast-feeding by treating infants prophylactically with lamivudine in Dar es Salaam, Tanzania: the Mitra Study. J. Acquir. Immune Defic. Syndr. 48:315-323.
-
(2008)
J. Acquir. Immune Defic. Syndr.
, vol.48
, pp. 315-323
-
-
Kilewo, C.1
Karlsson, K.2
Massawe, A.3
Lyamuya, E.4
Swai, A.5
Mhalu, F.6
Biberfeld, G.7
-
26
-
-
70350548085
-
Prevention of mother-to-child transmission of HIV-1 through breastfeeding by treating mothers with triple antiretroviral therapy in Dar es Salaam, Tanzania: The Mitra Plus Study
-
Kilewo, C., K. Karlsson, M. Ngarina, A. Massawe, E. Lyamuya, A. Swai, R. Lipyoga, F. Mhalu, and G. Biberfeld. 2009. Prevention of mother-to-child transmission of HIV-1 through breastfeeding by treating mothers with triple antiretroviral therapy in Dar es Salaam, Tanzania: the Mitra Plus Study. J. Acquir. Immune Defic. Syndr. 52:406-416.
-
(2009)
J. Acquir. Immune Defic. Syndr.
, vol.52
, pp. 406-416
-
-
Kilewo, C.1
Karlsson, K.2
Ngarina, M.3
Massawe, A.4
Lyamuya, E.5
Swai, A.6
Lipyoga, R.7
Mhalu, F.8
Biberfeld, G.9
-
28
-
-
28944437322
-
Transmission of cell-free and cell-associated HIV-1 through breast-feeding
-
Koulinska, I. N., E. Villamor, B. Chaplin, G. Msamanga, W. Fawzi, B. Renjifo, and M. Essex. 2006. Transmission of cell-free and cell-associated HIV-1 through breast-feeding. J. Acquir. Immune Defic. Syndr. 41:93-99.
-
(2006)
J. Acquir. Immune Defic. Syndr.
, vol.41
, pp. 93-99
-
-
Koulinska, I.N.1
Villamor, E.2
Chaplin, B.3
Msamanga, G.4
Fawzi, W.5
Renjifo, B.6
Essex, M.7
-
29
-
-
0033456218
-
Enhanced in vivo human immunodeficiency virus-1 replication in the lungs of human immunodeficiency virus-infected persons with Pneumocystis carinii pneumonia
-
Koziel, H., S. Kim, C. Reardon, X. Li, R. Garland, P. Pinkston, and H. Kornfeld. 1999. Enhanced in vivo human immunodeficiency virus-1 replication in the lungs of human immunodeficiency virus-infected persons with Pneumocystis carinii pneumonia. Am. J. Respir. Crit. Care Med. 160:2048-2055.
-
(1999)
Am. J. Respir. Crit. Care Med.
, vol.160
, pp. 2048-2055
-
-
Koziel, H.1
Kim, S.2
Reardon, C.3
Li, X.4
Garland, R.5
Pinkston, P.6
Kornfeld, H.7
-
30
-
-
46949108668
-
Extended antiretroviral prophylaxis to reduce breast-milk HIV-1 transmission
-
Kumwenda, N. I., D. R. Hoover, L. M. Mofenson, M. C. Thigpen, G. Kafulafula, Q. Li, L. Mipando, K. Nkanaunena, T. Mebrahtu, M. Bulterys, M. G. Fowler, and T. E. Taha. 2008. Extended antiretroviral prophylaxis to reduce breast-milk HIV-1 transmission. N. Engl. J. Med. 359:119-129.
-
(2008)
N. Engl. J. Med.
, vol.359
, pp. 119-129
-
-
Kumwenda, N.I.1
Hoover, D.R.2
Mofenson, L.M.3
Thigpen, M.C.4
Kafulafula, G.5
Li, Q.6
Mipando, L.7
Nkanaunena, K.8
Mebrahtu, T.9
Bulterys, M.10
Fowler, M.G.11
Taha, T.E.12
-
31
-
-
25444510145
-
Breast-milk shedding of drug-resistant HIV-1 subtype C in women exposed to single-dose nevirapine
-
Lee, E. J., R. Kantor, L. Zijenah, W. Sheldon, L. Emel, P. Mateta, E. Johnston, J. Wells, A. K. Shetty, H. Coovadia, Y. Maldonado, S. A. Jones, L. M. Mofenson, C. H. Contag, M. Bassett, and D. A. Katzenstein. 2005. Breast-milk shedding of drug-resistant HIV-1 subtype C in women exposed to single-dose nevirapine. J. Infect. Dis. 192:1260-1264.
-
(2005)
J. Infect. Dis.
, vol.192
, pp. 1260-1264
-
-
Lee, E.J.1
Kantor, R.2
Zijenah, L.3
Sheldon, W.4
Emel, L.5
Mateta, P.6
Johnston, E.7
Wells, J.8
Shetty, A.K.9
Coovadia, H.10
Maldonado, Y.11
Jones, S.A.12
Mofenson, L.M.13
Contag, C.H.14
Bassett, M.15
Katzenstein, D.A.16
-
32
-
-
0029817259
-
HIV quasispecies and resampling
-
Liu, S.-L., A. G. Rodrigo, R. Shankarappa, G. H. Learn, L. Hsu, O. Davidov, L. P. Zhao, and J. I. Mullins. 1996. HIV quasispecies and resampling. Science 273:415-416.
-
(1996)
Science
, vol.273
, pp. 415-416
-
-
Liu, S.-L.1
Rodrigo, A.G.2
Shankarappa, R.3
Learn, G.H.4
Hsu, L.5
Davidov, O.6
Zhao, L.P.7
Mullins, J.I.8
-
33
-
-
0030947397
-
Divergent patterns of progression to AIDS after infection from the same source: Human immunodeficiency virus type 1 evolution and antiviral responses
-
Liu, S. L., T. Schacker, L. Musey, D. Shriner, M. J. McElrath, L. Corey, and J. I. Mullins. 1997. Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses. J. Virol. 71:4284-4295.
-
(1997)
J. Virol.
, vol.71
, pp. 4284-4295
-
-
Liu, S.L.1
Schacker, T.2
Musey, L.3
Shriner, D.4
McElrath, M.J.5
Corey, L.6
Mullins, J.I.7
-
34
-
-
4644349606
-
-
Sinauer Associates, Inc., Sunderland, MA
-
Maddison, D. R., and W. P. Maddison. 2000. MacClade 4: analysis of phylogeny and character evolution. Sinauer Associates, Inc., Sunderland, MA.
-
(2000)
MacClade 4: Analysis of Phylogeny and Character Evolution
-
-
Maddison, D.R.1
Maddison, W.P.2
-
35
-
-
0035169609
-
Increased turnover of T lymphocytes in HIV-1 infection and its reduction by antiretroviral therapy
-
Mohri, H., A. S. Perelson, K. Tung, R. M. Ribeiro, B. Ramratnam, M. Markowitz, R. Kost, A. Hurley, L. Weinberger, D. Cesar, M. K. Hellerstein, and D. D. Ho. 2001. Increased turnover of T lymphocytes in HIV-1 infection and its reduction by antiretroviral therapy. J. Exp. Med. 194:1277-1287.
-
(2001)
J. Exp. Med.
, vol.194
, pp. 1277-1287
-
-
Mohri, H.1
Perelson, A.S.2
Tung, K.3
Ribeiro, R.M.4
Ramratnam, B.5
Markowitz, M.6
Kost, R.7
Hurley, A.8
Weinberger, L.9
Cesar, D.10
Hellerstein, M.K.11
Ho, D.D.12
-
36
-
-
0028327179
-
The clinical usefulness of breast milk sodium in the assessment of lactogenesis
-
Morton, J. A. 1994. The clinical usefulness of breast milk sodium in the assessment of lactogenesis. Pediatrics 93:802-806.
-
(1994)
Pediatrics
, vol.93
, pp. 802-806
-
-
Morton, J.A.1
-
37
-
-
0030944536
-
Mycobacterium tuberculosis enhances human immunodeficiency virus-1 replication in the lung
-
Nakata, K., W. N. Rom, Y. Honda, R. Condos, S. Kanegasaki, Y. Cao, and M. Weiden. 1997. Mycobacterium tuberculosis enhances human immunodeficiency virus-1 replication in the lung. Am. J. Respir. Crit. Care Med. 155: 996-1003.
-
(1997)
Am. J. Respir. Crit. Care Med.
, vol.155
, pp. 996-1003
-
-
Nakata, K.1
Rom, W.N.2
Honda, Y.3
Condos, R.4
Kanegasaki, S.5
Cao, Y.6
Weiden, M.7
-
38
-
-
0034161409
-
Effect of breastfeeding and formula feeding on transmission of HIV-1: A randomized clinical trial
-
Nduati, R., G. John, D. Mbori-Ngacha, B. Richardson, J. Overbaugh, A. Mwatha, J. Ndinya-Achola, J. Bwayo, F. E. Onyango, J. Hughes, and J. Kreiss. 2000. Effect of breastfeeding and formula feeding on transmission of HIV-1: a randomized clinical trial. JAMA 283:1167-1174.
-
(2000)
JAMA
, vol.283
, pp. 1167-1174
-
-
Nduati, R.1
John, G.2
Mbori-Ngacha, D.3
Richardson, B.4
Overbaugh, J.5
Mwatha, A.6
Ndinya-Achola, J.7
Bwayo, J.8
Onyango, F.E.9
Hughes, J.10
Kreiss, J.11
-
39
-
-
0030860537
-
Macrophages as a source of HIV during opportunistic infections
-
Orenstein, J. M., C. Fox, and S. M. Wahl. 1997. Macrophages as a source of HIV during opportunistic infections. Science 276:1857-1861.
-
(1997)
Science
, vol.276
, pp. 1857-1861
-
-
Orenstein, J.M.1
Fox, C.2
Wahl, S.M.3
-
40
-
-
34447315041
-
Treatment acceleration program and the experience of the DREAM program in prevention of mother-to-child transmission of HIV
-
Palombi, L., M. C. Marazzi, A. Voetberg, and N. A. Magid. 2007. Treatment acceleration program and the experience of the DREAM program in prevention of mother-to-child transmission of HIV. AIDS 21(Suppl. 4):S65-S71.
-
(2007)
AIDS
, vol.21
, Issue.SUPPL. 4
-
-
Palombi, L.1
Marazzi, M.C.2
Voetberg, A.3
Magid, N.A.4
-
41
-
-
42649136257
-
Correlating viral phenotypes with phylogeny: Accounting for phylogenetic uncertainty
-
Parker, J., A. Rambaut, and O. G. Pybus. 2008. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect. Genet. Evol. 8:239-246.
-
(2008)
Infect. Genet. Evol.
, vol.8
, pp. 239-246
-
-
Parker, J.1
Rambaut, A.2
Pybus, O.G.3
-
42
-
-
77349126676
-
Local replication of simian immunodeficiency virus in the breast milk compartment of chronically infected, lactating rhesus monkeys
-
Permar, S. R., H. H. Kang, A. B. Wilks, L. V. Mach, A. Carville, K. G. Mansfield, G. H. Learn, B. H. Hahn, and N. L. Letvin. 2010. Local replication of simian immunodeficiency virus in the breast milk compartment of chronically infected, lactating rhesus monkeys. Retrovirology 7:7.
-
(2010)
Retrovirology
, vol.7
, pp. 7
-
-
Permar, S.R.1
Kang, H.H.2
Wilks, A.B.3
Mach, L.V.4
Carville, A.5
Mansfield, K.G.6
Learn, G.H.7
Hahn, B.H.8
Letvin, N.L.9
-
43
-
-
0034253003
-
Cell-free virus in breast milk of HIV-1-seropositive women
-
Pillay, K., A. Coutsoudis, D. York, L. Kuhn, and H. M. Coovadia. 2000. Cell-free virus in breast milk of HIV-1-seropositive women. J. Acquir. Immune Defic. Syndr. 24:330-336.
-
(2000)
J. Acquir. Immune Defic. Syndr.
, vol.24
, pp. 330-336
-
-
Pillay, K.1
Coutsoudis, A.2
York, D.3
Kuhn, L.4
Coovadia, H.M.5
-
44
-
-
0031694637
-
Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1
-
Poss, M., A. G. Rodrigo, J. J. Gosink, G. H. Learn, D. de Vange Panteleeff, H. L. Martin, Jr., J. Bwayo, J. K. Kreiss, and J. Overbaugh. 1998. Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1. J. Virol. 72: 8240-8251.
-
(1998)
J. Virol.
, vol.72
, pp. 8240-8251
-
-
Poss, M.1
Rodrigo, A.G.2
Gosink, J.J.3
Learn, G.H.4
De Vange Panteleeff, D.5
Martin Jr., H.L.6
Bwayo, J.7
Kreiss, J.K.8
Overbaugh, J.9
-
45
-
-
0030977113
-
Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays
-
Rodrigo, A. G., P. C. Goracke, K. Rowhanian, and J. I. Mullins. 1997. Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays. AIDS Res. Hum. Retroviruses 13:737-742.
-
(1997)
AIDS Res. Hum. Retroviruses
, vol.13
, pp. 737-742
-
-
Rodrigo, A.G.1
Goracke, P.C.2
Rowhanian, K.3
Mullins, J.I.4
-
46
-
-
0037333250
-
Longitudinal analysis of human immunodeficiency virus type 1 RNA in breast milk and of its relationship to infant infection and maternal disease
-
Rousseau, C. M., R. W. Nduati, B. A. Richardson, M. S. Steele, G. C. John-Stewart, D. A. Mbori-Ngacha, J. K. Kreiss, and J. Overbaugh. 2003. Longitudinal analysis of human immunodeficiency virus type 1 RNA in breast milk and of its relationship to infant infection and maternal disease. J. Infect. Dis. 187:741-747.
-
(2003)
J. Infect. Dis.
, vol.187
, pp. 741-747
-
-
Rousseau, C.M.1
Nduati, R.W.2
Richardson, B.A.3
Steele, M.S.4
John-Stewart, G.C.5
Mbori-Ngacha, D.A.6
Kreiss, J.K.7
Overbaugh, J.8
-
47
-
-
0033016315
-
Human immunodeficiency virus load in breast milk, mastitis, and mother-to-child transmission of human immunodeficiency virus type 1
-
Semba, R. D., N. Kumwenda, D. R. Hoover, T. E. Taha, T. C. Quinn, L. Mtimavalye, R. J. Biggar, R. Broadhead, P. G. Miotti, L. J. Sokoll, L. van der Hoeven, and J. D. Chiphangwi. 1999. Human immunodeficiency virus load in breast milk, mastitis, and mother-to-child transmission of human immunodeficiency virus type 1. J. Infect. Dis. 180:93-98.
-
(1999)
J. Infect. Dis.
, vol.180
, pp. 93-98
-
-
Semba, R.D.1
Kumwenda, N.2
Hoover, D.R.3
Taha, T.E.4
Quinn, T.C.5
Mtimavalye, L.6
Biggar, R.J.7
Broadhead, R.8
Miotti, P.G.9
Sokoll, L.J.10
Van Der Hoeven, L.11
Chiphangwi, J.D.12
-
48
-
-
0032710838
-
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
-
Shankarappa, R., J. B. Margolick, S. J. Gange, A. G. Rodrigo, D. Upchurch, H. Farzadegan, P. Gupta, C. R. Rinaldo, G. H. Learn, X. He, X. L. Huang, and J. I. Mullins. 1999. Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection. J. Virol. 73:10489-10502.
-
(1999)
J. Virol.
, vol.73
, pp. 10489-10502
-
-
Shankarappa, R.1
Margolick, J.B.2
Gange, S.J.3
Rodrigo, A.G.4
Upchurch, D.5
Farzadegan, H.6
Gupta, P.7
Rinaldo, C.R.8
Learn, G.H.9
He, X.10
Huang, X.L.11
Mullins, J.I.12
-
49
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin, M., and W. P. Maddison. 1989. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123:603-613.
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
50
-
-
13744263272
-
Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy
-
Strain, M. C., S. Letendre, S. K. Pillai, T. Russell, C. C. Ignacio, H. F. Gunthard, B. Good, D. M. Smith, S. M. Wolinsky, M. Furtado, J. Marquie- Beck, J. Durelle, I. Grant, D. D. Richman, T. Marcotte, J. A. McCutchan, R. J. Ellis, and J. K. Wong. 2005. Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy. J. Virol. 79:1772-1788.
-
(2005)
J. Virol.
, vol.79
, pp. 1772-1788
-
-
Strain, M.C.1
Letendre, S.2
Pillai, S.K.3
Russell, T.4
Ignacio, C.C.5
Gunthard, H.F.6
Good, B.7
Smith, D.M.8
Wolinsky, S.M.9
Furtado, M.10
Marquie-Beck, J.11
Durelle, J.12
Grant, I.13
Richman, D.D.14
Marcotte, T.15
McCutchan, J.A.16
Ellis, R.J.17
Wong, J.K.18
-
51
-
-
33747099592
-
Breastfeeding plus infant zidovudine prophylaxis for 6 months versus formula feeding plus infant zidovudine for 1 month to reduce mother-to-child HIV transmission in Botswana. A randomized trial: The Mashi Study
-
Thior, I., S. Lockman, L. M. Smeaton, R. L. Shapiro, C. Wester, S. J. Heymann, P. B. Gilbert, L. Stevens, T. Peter, S. Kim, E. van Widenfelt, C. Moffat, P. Ndase, P. Arimi, P. Kebaabetswe, P. Mazonde, J. Makhema, K. McIntosh, V. Novitsky, T. H. Lee, R. Marlink, S. Lagakos, and M. Essex. 2006. Breastfeeding plus infant zidovudine prophylaxis for 6 months versus formula feeding plus infant zidovudine for 1 month to reduce mother-to-child HIV transmission in Botswana. A randomized trial: the Mashi Study. JAMA 296:794-805.
-
(2006)
JAMA
, vol.296
, pp. 794-805
-
-
Thior, I.1
Lockman, S.2
Smeaton, L.M.3
Shapiro, R.L.4
Wester, C.5
Heymann, S.J.6
Gilbert, P.B.7
Stevens, L.8
Peter, T.9
Kim, S.10
Van Widenfelt, E.11
Moffat, C.12
Ndase, P.13
Arimi, P.14
Kebaabetswe, P.15
Mazonde, P.16
Makhema, J.17
McIntosh, K.18
Novitsky, V.19
Lee, T.H.20
Marlink, R.21
Lagakos, S.22
Essex, M.23
more..
-
52
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
53
-
-
22544461340
-
Evidence that low-level viremias during effective highly active antiretroviral therapy result from two processes: Expression of archival virus and replication of virus
-
Tobin, N. H., G. H. Learn, S. E. Holte, Y. Wang, A. J. Melvin, J. L. McKernan, D. Pawluk, K. M. Mohan, P. F. Lewis, J. I. Mullins, and L. M. Frenkel. 2005. Evidence that low-level viremias during effective highly active antiretroviral therapy result from two processes: expression of archival virus and replication of virus. J. Virol. 79:9625-9634.
-
(2005)
J. Virol.
, vol.79
, pp. 9625-9634
-
-
Tobin, N.H.1
Learn, G.H.2
Holte, S.E.3
Wang, Y.4
Melvin, A.J.5
McKernan, J.L.6
Pawluk, D.7
Mohan, K.M.8
Lewis, P.F.9
Mullins, J.I.10
Frenkel, L.M.11
-
54
-
-
0033532628
-
Cytokine signals are sufficient for HIV-1 infection of resting human T lymphocytes
-
Unutmaz, D., V. N. KewalRamani, S. Marmon, and D. R. Littman. 1999. Cytokine signals are sufficient for HIV-1 infection of resting human T lymphocytes. J. Exp. Med. 189:1735-1746.
-
(1999)
J. Exp. Med.
, vol.189
, pp. 1735-1746
-
-
Unutmaz, D.1
KewalRamani, V.N.2
Marmon, S.3
Littman, D.R.4
-
55
-
-
0034470448
-
Subclinical mastitis as a risk factor for motherinfant HIV transmission
-
Willumsen, J. F., S. M. Filteau, A. Coutsoudis, K. E. Uebel, M. L. Newell, and A. M. Tomkins. 2000. Subclinical mastitis as a risk factor for motherinfant HIV transmission. Adv. Exp. Med. Biol. 478:211-223.
-
(2000)
Adv. Exp. Med. Biol.
, vol.478
, pp. 211-223
-
-
Willumsen, J.F.1
Filteau, S.M.2
Coutsoudis, A.3
Uebel, K.E.4
Newell, M.L.5
Tomkins, A.M.6
-
56
-
-
34249938830
-
Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1
-
Zarate, S., S. L. Pond, P. Shapshak, and S. D. Frost. 2007. Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1. J. Virol. 81:6643-6651.
-
(2007)
J. Virol.
, vol.81
, pp. 6643-6651
-
-
Zarate, S.1
Pond, S.L.2
Shapshak, P.3
Frost, S.D.4
-
57
-
-
0029998895
-
Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: Evidence for viral compartmentalization and selection during sexual transmission
-
Zhu, T., N. Wang, A. Carr, D. S. Nam, R. Moor-Jankowski, D. A. Cooper, and D. D. Ho. 1996. Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission. J. Virol. 70:3098-3107.
-
(1996)
J. Virol.
, vol.70
, pp. 3098-3107
-
-
Zhu, T.1
Wang, N.2
Carr, A.3
Nam, D.S.4
Moor-Jankowski, R.5
Cooper, D.A.6
Ho, D.D.7
|