-
1
-
-
23844449940
-
Computer-based de novo design of drug-like molecules
-
Schneider G, Fechner U. Computer-based de novo design of drug-like molecules. Nat. Rev. Drug Discov. 2005; 4: 649-663.
-
(2005)
Nat. Rev. Drug Discov.
, vol.4
, pp. 649-663
-
-
Schneider, G.1
Fechner, U.2
-
3
-
-
17144419244
-
LEA3D: A computer-aided ligand design for structure-based drug design
-
Douguet D, Munier-Lehmann H, Labesse G, Pochet S. LEA3D: a computer-aided ligand design for structure-based drug design. J. Med. Chem. 2005; 48: 2457-2468.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 2457-2468
-
-
Douguet, D.1
Munier-Lehmann, H.2
Labesse, G.3
Pochet, S.4
-
4
-
-
0035570105
-
A genetic algorithm for structure-based de novo design
-
Murray CW, Clark DE, Auton TR, Firth MA, Li J, Sykes RA,Waszkowycz B, Westhead DR, Young SC. A genetic algorithm for structure-based de novo design. J. Comput. Aided Mol. Des. 2001; 15: 911-933.
-
(2001)
J. Comput. Aided Mol. Des.
, vol.15
, pp. 911-933
-
-
Murray, C.W.1
Clark, D.E.2
Auton, T.R.3
Firth, M.A.4
Li, J.5
Sykes R.A,Waszkowycz, B.6
Westhead, D.R.7
Young, S.C.8
-
5
-
-
0037777697
-
Synopsis: Synthesize and optimize system in silico
-
Vinkers HM, de Jonge MR, Daeyaert FFD, Heeres J, Koymans LMH, van Lenthe JH, Lewi PJ, Timmerman H, Van Aken K, Janssen PAJ. Synopsis: synthesize and optimize system in silico. J. Med. Chem. 2003; 46: 2765-2773.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 2765-2773
-
-
Vinkers, H.M.1
de Jonge, M.R.2
Daeyaert, F.F.D.3
Heeres, J.4
Koymans, L.M.H.5
van Lenthe, J.H.6
Lewi, P.J.7
Timmerman, H.8
Van Aken, K.9
Janssen, P.A.J.10
-
6
-
-
20544470856
-
Fingal: A novel approach to geometric fingerprinting and a comparative study of its application to 3D-QSAR modeling
-
Brown N, Mckey B, Gasteiger J. Fingal: a novel approach to geometric fingerprinting and a comparative study of its application to 3D-QSAR modeling. QSAR Comb. Sci. 2005; 24: 480-484.
-
(2005)
QSAR Comb. Sci.
, vol.24
, pp. 480-484
-
-
Brown, N.1
McKey, B.2
Gasteiger, J.3
-
7
-
-
84984376233
-
New molecular descriptors for 2D and 3D structures
-
Todeschini R, Lasagni M. New molecular descriptors for 2D and 3D structures. Theory. J. Chemom. 1994; 8(4): 263-272.
-
(1994)
Theory. J. Chemom.
, vol.8
, Issue.4
, pp. 263-272
-
-
Todeschini, R.1
Lasagni, M.2
-
8
-
-
0012019079
-
New 3D molecular descriptors: The WHIM theory and QSAR applications
-
Todeschini R, Gramatica P. New 3D molecular descriptors: the WHIM theory and QSAR applications. Perspect. Drug Discov. Des. 1998; 9-11(0): 355-380.
-
(1998)
Perspect. Drug Discov. Des.
, vol.9-11
, Issue.0
, pp. 355-380
-
-
Todeschini, R.1
Gramatica, P.2
-
9
-
-
0036589086
-
Structure/response correlations and similarity/diversity analysis by getaway descriptors. 1. Theory of the novel 3D molecular descriptors
-
Consonni V, Todeschini R, Pavan M. Structure/response correlations and similarity/diversity analysis by getaway descriptors. 1. Theory of the novel 3D molecular descriptors. J. Chem. Inf. Comput. Sci. 2002; 42(3): 682-692.
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, Issue.3
, pp. 682-692
-
-
Consonni, V.1
Todeschini, R.2
Pavan, M.3
-
11
-
-
0000224701
-
The coding of the three-dimensional structure of molecules by molecular transforms and its application to structure-spectra correlations and studies of biological activity
-
Schuur JH, Selzer P, Gasteiger J. The coding of the three-dimensional structure of molecules by molecular transforms and its application to structure-spectra correlations and studies of biological activity. J. Chem. Inf. Comput. Sci. 1996; 36(2): 334-344.
-
(1996)
J. Chem. Inf. Comput. Sci.
, vol.36
, Issue.2
, pp. 334-344
-
-
Schuur, J.H.1
Selzer, P.2
Gasteiger, J.3
-
12
-
-
0035159445
-
Recent advances on the role of topological indices in drug discovery research
-
Estrada E, Uriarte E. Recent advances on the role of topological indices in drug discovery research. Curr. Med. Chem. 2001; 8(13): 1573-1588.
-
(2001)
Curr. Med. Chem.
, vol.8
, Issue.13
, pp. 1573-1588
-
-
Estrada, E.1
Uriarte, E.2
-
13
-
-
0000226523
-
Topological indices: Their nature and mutual relatedness
-
Basak SC, Balaban AT, Grunwald GD, Gute BD. Topological indices: their nature and mutual relatedness. J. Chem. Inf. Comput. Sci. 2000; 40(4): 891-898.
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, Issue.4
, pp. 891-898
-
-
Basak, S.C.1
Balaban, A.T.2
Grunwald, G.D.3
Gute, B.D.4
-
14
-
-
0027692921
-
Traditional topological indices vs. electronic, geometrical, and combined molecular descriptors in QSAR/QSPR research
-
Katritzky AR, Gordeeva EV. Traditional topological indices vs. electronic, geometrical, and combined molecular descriptors in QSAR/QSPR research. J. Chem. Inf. Comput. Sci. 1993; 33(6): 835-857.
-
(1993)
J. Chem. Inf. Comput. Sci.
, vol.33
, Issue.6
, pp. 835-857
-
-
Katritzky, A.R.1
Gordeeva, E.V.2
-
15
-
-
0013490610
-
Inverse problem in QSAR/QSPR studies for the case of topological indexes characterizing molecular shape (Kier indexes)
-
Skvortsova MI, Baskin II, Slovokhotova OL, Palyulin VA, Zefirov NS. Inverse problem in QSAR/QSPR studies for the case of topological indexes characterizing molecular shape (Kier indexes). J. Chem. Inf. Comput. Sci. 1993; 33(4): 630-634.
-
(1993)
J. Chem. Inf. Comput. Sci.
, vol.33
, Issue.4
, pp. 630-634
-
-
Skvortsova, M.I.1
Baskin, I.I.2
Slovokhotova, O.L.3
Palyulin, V.A.4
Zefirov, N.S.5
-
16
-
-
0037350844
-
Partial least squares for discrimination
-
Barker M, Rayens W. Partial least squares for discrimination. J. Chemom. 2003; 17(3): 166-173.
-
(2003)
J. Chemom.
, vol.17
, Issue.3
, pp. 166-173
-
-
Barker, M.1
Rayens, W.2
-
19
-
-
0001757405
-
K-nearest neighbor classification rule (pattern-recognition) applied to nuclear magnetic-resonance spectral interpretation
-
Kowalski BR, Bender CF. K-nearest neighbor classification rule (pattern-recognition) applied to nuclear magnetic-resonance spectral interpretation. Anal. Chem. 1972; 44(8): 1405-1411.
-
(1972)
Anal. Chem.
, vol.44
, Issue.8
, pp. 1405-1411
-
-
Kowalski, B.R.1
Bender, C.F.2
-
20
-
-
0038136319
-
A generalized k-nearest neighbor rule
-
Patrick EA, Fischer FP. A generalized k-nearest neighbor rule. Inform. Control 1970; 16(2): 128-152.
-
(1970)
Inform. Control
, vol.16
, Issue.2
, pp. 128-152
-
-
Patrick, E.A.1
Fischer, F.P.2
-
23
-
-
0016973661
-
Pattern-recognition by means of disjoint principal components models
-
Wold S. Pattern-recognition by means of disjoint principal components models. Pattern Recog. 1976; 8(3): 127-139.
-
(1976)
Pattern Recog.
, vol.8
, Issue.3
, pp. 127-139
-
-
Wold, S.1
-
25
-
-
0030884306
-
Classification of pyrolysis mass spectra by fuzzy multivariate rule induction-comparison with regression, K-nearest neighbour, neural and decision-tree methods
-
Alsberg BK, Goodacre R, Rowland JJ, Kell DB. Classification of pyrolysis mass spectra by fuzzy multivariate rule induction-comparison with regression, K-nearest neighbour, neural and decision-tree methods. Analytica Chimica Acta 1997; 348(1-3): 389-407.
-
(1997)
Analytica Chimica Acta
, vol.348
, Issue.1-3
, pp. 389-407
-
-
Alsberg, B.K.1
Goodacre, R.2
Rowland, J.J.3
Kell, D.B.4
-
26
-
-
0035478854
-
Random forests
-
Breiman L. Random forests. Mach. Learn. 2001; 45(1): 5-32.
-
(2001)
Mach. Learn.
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
27
-
-
0003715355
-
-
Elsevier Science: New York
-
Massart DL, Vandeginste BGM, Buydens LMC, De Jong SD, Lewi PJ, Smeyers-Verbeke J. Handbook of Chemometrics and Qualimetrics: Part A and B. Elsevier Science: New York, 1997.
-
(1997)
Handbook of Chemometrics and Qualimetrics: Part A and B
-
-
Massart, D.L.1
Vandeginste, B.G.M.2
Buydens, L.M.C.3
De Jong, S.D.4
Lewi, P.J.5
Smeyers-Verbeke, J.6
-
28
-
-
17144398395
-
Anchor-grind: Filling the gap between standard 3D QSAR and the grid-independent descriptors
-
Fontaine F, Pastor M, Zamora I, Sanz F. Anchor-grind: filling the gap between standard 3D QSAR and the grid-independent descriptors. J. Med. Chem. 2005; 48(7): 2687-2694.
-
(2005)
J. Med. Chem.
, vol.48
, Issue.7
, pp. 2687-2694
-
-
Fontaine, F.1
Pastor, M.2
Zamora, I.3
Sanz, F.4
-
29
-
-
33750204884
-
Representation of molecular structure using quantum topology with inductive logic programming in structure-activity relationships
-
Buttingsrud B, Ryeng E, King RD, Alsberg BK. Representation of molecular structure using quantum topology with inductive logic programming in structure-activity relationships. J. Comput. Aided Mol.Des. 2006; 20(6): 361-373.
-
(2006)
J. Comput. Aided Mol.Des.
, vol.20
, Issue.6
, pp. 361-373
-
-
Buttingsrud, B.1
Ryeng, E.2
King, R.D.3
Alsberg, B.K.4
-
30
-
-
0037361967
-
The chemistry development kit (CDK): An open-source java library for chemo-and bioinformatics
-
Steinbeck C, Han Y, Kuhn S, Horlacher O, Luttmann E, Willighagen E. The chemistry development kit (CDK): an open-source java library for chemo-and bioinformatics. J. Chem. Inf. Comput. Sci. 2003; 43: 493-500.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 493-500
-
-
Steinbeck, C.1
Han, Y.2
Kuhn, S.3
Horlacher, O.4
Luttmann, E.5
Willighagen, E.6
-
31
-
-
10344253046
-
Development and use of charged partial surface area structural descriptors in computer-assisted quantitative structure-property relationship studies
-
Stanton DT, Jurs PC. Development and use of charged partial surface area structural descriptors in computer-assisted quantitative structure-property relationship studies. Anal. Chem. 1990; 62(21): 2323-2329.
-
(1990)
Anal. Chem.
, vol.62
, Issue.21
, pp. 2323-2329
-
-
Stanton, D.T.1
Jurs, P.C.2
-
32
-
-
18144404059
-
Correlation of boiling points with molecular structure. 1. a training set of 298 diverse organics and a test set of 9 simple inorganics
-
Katritzky AR, Mu L, Lobanov VS, Karelson M. Correlation of boiling points with molecular structure. 1. a training set of 298 diverse organics and a test set of 9 simple inorganics. J. Phys. Chem. 1996; 100(24): 10400-10407.
-
(1996)
J. Phys. Chem.
, vol.100
, Issue.24
, pp. 10400-10407
-
-
Katritzky, A.R.1
Mu, L.2
Lobanov, V.S.3
Karelson, M.4
-
33
-
-
0032112107
-
Prediction of human intestinal absorption of drug compounds from molecular structure
-
Wessel MD, Jurs PC, Tolan JW, Muskal SM. Prediction of human intestinal absorption of drug compounds from molecular structure. J. Chem. Inf. Comput. Sci. 1998; 38(4): 726-735.
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, Issue.4
, pp. 726-735
-
-
Wessel, M.D.1
Jurs, P.C.2
Tolan, J.W.3
Muskal, S.M.4
-
34
-
-
11744325593
-
Approach to estimation and prediction for normal boiling point (nbp) of alkanes based on a novel molecular distanceedge (MDE) vector, lambda
-
Liu S, Cao C, Li Z. Approach to estimation and prediction for normal boiling point (nbp) of alkanes based on a novel molecular distanceedge (MDE) vector, lambda. J. Chem. Inf. Comput. Sci. 1998; 38(3): 387-394.
-
(1998)
J. Chem. Inf. Comput. Sci.
, vol.38
, Issue.3
, pp. 387-394
-
-
Liu, S.1
Cao, C.2
Li, Z.3
-
35
-
-
0000697995
-
Applications of the radius-diameter diagram to the classification of topological and geometrical shapes of chemical compounds
-
Petitjean M. Applications of the radius-diameter diagram to the classification of topological and geometrical shapes of chemical compounds. J. Chem. Inf. Comput. Sci. 1992; 32(4): 331-337.
-
(1992)
J. Chem. Inf. Comput. Sci.
, vol.32
, Issue.4
, pp. 331-337
-
-
Petitjean, M.1
-
36
-
-
0000694020
-
The extent of the relationship between the graph-theoretical and the geometrical shape coefficients of chemical compounds
-
Bath P, Poirrette AR, Willett P, Allen FH. The extent of the relationship between the graph-theoretical and the geometrical shape coefficients of chemical compounds. J. Chem. Inf. Comput. Sci. 1995; 35(4): 714-716.
-
(1995)
J. Chem. Inf. Comput. Sci.
, vol.35
, Issue.4
, pp. 714-716
-
-
Bath, P.1
Poirrette, A.R.2
Willett, P.3
Allen, F.H.4
-
37
-
-
0034609833
-
Fast calculation of molecular polar surface area as a sum of fragment-based contributions and its application to the prediction of drug transport properties
-
Ertl P, Rohde B, Selzer P. Fast calculation of molecular polar surface area as a sum of fragment-based contributions and its application to the prediction of drug transport properties. J. Med. Chem. 2000; 43(20): 3714-3717.
-
(2000)
J. Med. Chem.
, vol.43
, Issue.20
, pp. 3714-3717
-
-
Ertl, P.1
Rohde, B.2
Selzer, P.3
-
39
-
-
21044448353
-
Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The Report and Recommendations of ECVAM Workshop 52
-
Netzeva TI, Worth A, Aldenberg T, Benigni R, Cronin MT, Gramatica P, Jaworska JS, Kahn S, Klopman G, Marchant CA, Myatt G, Nikolova-Jeliazkova N, Patlewicz GY, Perkins R, Roberts D, Schultz T, Stanton DW, van de Sandt JJ, Tong W, Veith G, Yang C. Current status of methods for defining the applicability domain of (quantitative) structure-activity relationships. The Report and Recommendations of ECVAM Workshop 52. Altern. Lab. Anim. 2005; 33: 155-173.
-
(2005)
Altern. Lab. Anim.
, vol.33
, pp. 155-173
-
-
Netzeva, T.I.1
Worth, A.2
Aldenberg, T.3
Benigni, R.4
Cronin, M.T.5
Gramatica, P.6
Jaworska, J.S.7
Kahn, S.8
Klopman, G.9
Marchant, C.A.10
Myatt, G.11
Nikolova-Jeliazkova, N.12
Patlewicz, G.Y.13
Perkins, R.14
Roberts, D.15
Schultz, T.16
Stanton, D.W.17
van de Sandt, J.J.18
Tong, W.19
Veith, G.20
Yang, C.21
more..
-
40
-
-
0000262640
-
A new atom-additive method for calculating partition coefficients
-
Wang R, Fu Y, Lai L. A new atom-additive method for calculating partition coefficients. J. Chem. Inf. Comput. Sci. 1999; 37(3): 615-621.
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.37
, Issue.3
, pp. 615-621
-
-
Wang, R.1
Fu, Y.2
Lai, L.3
-
41
-
-
0033820007
-
Calculating partition coefficient by atom-additive method
-
Wang R, Gao Y, Lai L. Calculating partition coefficient by atom-additive method. Perspect. Drug Discov. Des. 2000; 19(1): 47-66.
-
(2000)
Perspect. Drug Discov. Des.
, vol.19
, Issue.1
, pp. 47-66
-
-
Wang, R.1
Gao, Y.2
Lai, L.3
-
42
-
-
1842689929
-
Evolutionary-algorithm-based strategy for computer-assisted structure elucidation
-
Han YQ, Steinbeck C. Evolutionary-algorithm-based strategy for computer-assisted structure elucidation. J. Chem. Inf. Comput. Sci. 2004; 44: 489-498.
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, pp. 489-498
-
-
Han, Y.Q.1
Steinbeck, C.2
-
43
-
-
0000353450
-
Stochastic generator of chemical structure. 2. Using simulated annealing to search the space of constitutional isomers
-
Faulon JL. Stochastic generator of chemical structure. 2. Using simulated annealing to search the space of constitutional isomers. J. Chem. Inf. Comput. Sci. 1996; 36(4): 731-740.
-
(1996)
J. Chem. Inf. Comput. Sci.
, vol.36
, Issue.4
, pp. 731-740
-
-
Faulon, J.L.1
-
44
-
-
54249125512
-
Critical assessment of qsar models of environmental toxicity against tetrahymena pyriformis: Focusing on applicability domain and overfitting by variable selection
-
Tetko IV, Sushko I, Pandey AK, Zhu H, Tropsha A, Papa E, Öberg T, Todeschini R, Fourches D, Varnek A. Critical assessment of qsar models of environmental toxicity against tetrahymena pyriformis: focusing on applicability domain and overfitting by variable selection. J. Chem. Inf. Model. 2008; 48: 1733-1746.
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 1733-1746
-
-
Tetko, I.V.1
Sushko, I.2
Pandey, A.K.3
Zhu, H.4
Tropsha, A.5
Papa, E.6
Öberg, T.7
Todeschini, R.8
Fourches, D.9
Varnek, A.10
-
45
-
-
38949193230
-
An alignment-free methodology for modelling field-based 3D-structure activity relationships using inductive logic programming
-
Buttingsrud B, King RD, Alsberg BK. An alignment-free methodology for modelling field-based 3D-structure activity relationships using inductive logic programming. J. Chemom. 2007; 21(12): 509-519.
-
(2007)
J. Chemom.
, vol.21
, Issue.12
, pp. 509-519
-
-
Buttingsrud, B.1
King, R.D.2
Alsberg, B.K.3
|