Isolation of dna-methyltransferase genes from strawberry (fragaria 3 ananassa duch.) and their expression in relation to micropropagation

Plant Cell Reports

Volumn 28, Issue 9, 2009, Pages 1373-1384

  Chang, Linlin ^a   Zhang, Zhihong ^a   Han, Baiming ^a   Li, He ^a   Dai, Hongyan ^a   He, Ping ^a   Tian, Hongzhe ^a  

^a SHENYANG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Met drm real time pcr fragaria 9 ananassa micropropagation

Indexed keywords

FRAGARIA; FRAGARIA X ANANASSA;

COMPLEMENTARY DNA; DNA METHYLTRANSFERASE; PLANT DNA; VEGETABLE PROTEIN;

ARTICLE; DNA METHYLATION; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT; STRAWBERRY;

BASE SEQUENCE; CLONING, MOLECULAR; DNA METHYLATION; DNA MODIFICATION METHYLASES; DNA, COMPLEMENTARY; DNA, PLANT; FRAGARIA; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 77957032149     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-009-0737-8     Document Type: Article

References (60)

1. Ashapkin VV, Kutueva LI, Vanyushin BF (2002) The gene for domains rearranged methyltransferase (DRM2) in Arabidopsis thaliana plants is methylated at both cytosine and adenine residues. FEBS Lett 532(3):367-372
2. Ashley MV, Wilk JA, Styan SM, Craft KJ, Jones KL, Feldheim KA, Lewers KS, Ashman TL (2003) High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill. (Rosaceae). Theor Appl Genet 107(7):1201-1207
3. Aufsatz W, Mette MF, Matzke AJ, Matzke M (2004) The role of MET1 in RNA-directed de novo and maintenance methylation of CG dinucleotides. Plant Mol Biol 54(6):793-804
4. Bartee L, Malagnac F, Bender J (2001) Arabidopsis cmt3 chromo-methylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev 15(14):1753-1758
5. Bender J (2004) DNA methylation and epigenetics. Annu Rev Plant Biol 55:41-68
6. Bernacchia G, Para A, Pedrali-Noy G, Cella R (1998a) Isolation of a cDNA coding for DNA (cytosine-5)-methyltransferase (accession no. AJ002140) from Lycopersicon esculentum. Plant Physiol 116:446-446
7. Bernacchia G, Primo A, Giorgetti L, Pitto L, Cella R (1998b) Carrot DNA-methyltransferase is encoded by two classes of genes with differing patterns of expression. Plant J 13(3):317-329
8. Bitonti MB, Cozza R, Chiappetta A, Giannino D, Ruffini Castiglione M, Dewitte W, Mariotti D, Van Onckelen H, Innocenti AM (2002) Distinct nuclear organization, DNA methylation pattern and cytokinin distribution mark juvenile, juvenile-like and adult vegetative apical meristems in peach (Prunus persica (L.) Batsch). J Exp Bot 53(371):1047-1054
9. Cao XF, Jacobsen SE (2002a) Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltrans-ferase genes. Proc Natl Acad Sci USA 99:16491-16498
10. Cao X, Jacobsen SE (2002b) Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 12(13):1138-1144
11. Cao X, Springer NM, Muszynski MG, Phillips RL, Kaeppler S, Jacobsen SE (2000) Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proc Natl Acad Sci USA 97(9):4979-4984
12. Cervera MT, Ruiz-García L, Martínez-Zapater J (2002) Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP marker. Mol Genet Genomics 268(4):543-552
13. Chan SW, Henderson IR, Jacobsen SE (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6(5):351-360
14. Chang L, Zhang Z, Yang H, Li H, Dai H (2007) Detection of strawberry RNA and DNA viruses by RT-PCR using total nucleic acid as a template. J Phytopathol 155:431-436
15. Dai H, Zhang Z, Guo X (2007) Adventitious bud regeneration from leaf and cotyledon explants of Chinese hawthorn (Crataegus pinnatifida Bge. var. major N.E.Br.). In Vitro Cell Dev Biol Plant 43:2-8
16. Finnegan EJ, Dennis ES (1993) Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana. Nucleic Acids Res 21(10):2383-2388
17. Finnegan EJ, Kovac KA (2000) Plant DNA methyltransferases. Plant Mol Biol 43(2-3):189-201
18. Finnegan EJ, Peacock WJ, Dennis ES (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc Natl Acad Sci USA 93(16):8449-8454
19. Fraga MF, Cañal MJ, Rodríguez R (2002) Phase-change related epigenetic and physiological changes in Pinus radiata D. Don. Planta 215(4):672-678
20. Fujimoto R, Sasaki T, Nishio T (2006) Characterization of DNA methyltransferase genes in Brassica rapa. Genes Genet Syst 81(4):235-242
21. Genger RK, Kovac KA, Dennis ES, Peachock WJ, Finnegan EJ (1999) Multiple DNA methyltransferase genes in Arabidopsis thaliana. Plant Mol Biol 41(2):269-278
22. Giannino D, Mele G, Cozza R, Bruno L, Testone G, Ticconi C, Frugis G, Bitonti MB, Innocenti AM, Mariotti D (2003) Isolation and characterization of a maintenance DNA-methyltransferase gene from peach (Prunus persica [L.] Batsch): transcript localization in vegetative and reproductive meristems of triple buds. J Exp Bot 54(393):2623-2633
23. Hasbún R, Valledor L, Berdasco M, Santamaria E, Cañal MJ, Rodriguez R, Rios D, Sánchez M (2005) In vitro proliferation and genome DNA methylation in adult chestnuts. Acta Hort 693:333-340
24. Henikoff S, Comai L (1998) A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis. Genetics 149(1):307-318
25. Jaligot E, Rival A, Beulé T, Dussert S, Vereil JL (2000) Somaclonal variation in oil palm (Elaeis guineensis Jacq.): the DNA methylation hypothesis. Plant Cell Rep 19:684-690
26. Joyce SM, Cassells AC (2002) Variation in potato microplant morphology in vitro and DNA methylation. Plant Cell Tiss Org Cult 70(2):125-137
27. Kanai Y, Saito Y, Ushijima S (2004) Alterations in gene expression associated with the overexpression of a splice variant of DNA methyltransferase 3b, DNMT3b4, during human hepatocarcino-genesis. J Cancer Res Clin Oncol 130:636-644
28. Karhu S (2001) Growth characteristics of micropropagated strawberries. Acta Hort 560:539-542
29. Kinet JM, Parmentier A (1989) The flowering behaviour of micro-propagated strawberry plants cv. 'Gorella': the influence of the number of sub-cultures on the multiplication medium. Acta Hort 265:327-334
30. Kumar S, Cheng X, Klimasauskas S, Mi S, Posfai J, Roberts RJ, Wilson GG (1994) The DNA (cytosine-5) methyltransferases. Nucleic Acids Res 22(1):1-10
31. Li X, Xu M, Korban SS (2002) DNA methylation profiles differ between field- and in vitro-grown leaves of apple. J Plant Physiol 159:1229-1234
32. Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE (2001) Requirement of chromometh-ylase3 for maintenance of CpXpG methylation. Science 292(5524):2077-2080
33. Litwińczuk W (2004) Field performance of 'Senga Sengana'strawberry plants (Fragaria 9 ananassa Duch.) obtained by runners and in vitro through axillary and adventitious shoots. EJPAU, Horticulture 7(1):art-03
34. Matthes M, Singh R, Cheah SC, Karp A (2001) Variation in oil palm (Elaeis guineensis Jacq.) tissue culture-derived regenerants revealed by AFLPs with methylation-sensitive enzymes. Theor Appl Genet 102(6-7):971-979
35. Messeguer R, Ganal MW, Steffens JC, Tanksley SD (1991) Characterization of the level, target sites and inheritance of cytosine methylation in tomato nuclear DNA. Plant Mol Biol 16(5):753-770
36. Mi J, Zhang Z, Li H, Gao X, Du G (2007) Blossoming and fruiting of micropropagated strawberry plants after transplantation. J Fruit Sci 24(4):472-476
37. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol Plant 15:473-497
38. Nakano Y, Steward N, Sekine M, Kusano T, Sano H (2000) A tobacco NtMET1 cDNA encoding a DNA methyltransferase: molecular characterization and abnormal phenotypes of transgenic tobacco plants. Plant Cell Physiol 41(4):448-457
39. Papa CM, Springer NM, Muszynski MG, Meeley R, Kaeppler SM (2001) Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. Plant Cell 13:1919-1928
40. Pósfai J, Bhagwat AS, Pósfait G, Roberts RJ (1989) Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res 17(7):2421-2435
41. Pradhan S, Cummings M, Roberts RJ, Adams RL (1998) Isolation, characterization and baculovirus-mediated expression of the cDNA encoding cytosine DNA methyltransferase from Pisum sativum. Nucleic Acids Res 26(5):1214-1222
42. Richards EJ (1997) DNA methylation and plant development. Trends Genet 13:319-323
43. Rival A, Jaligot E, Beulé T, Finnegan EJ (2008) Isolation and expression analysis of genes encoding MET, CMT, and DRM methyltransferases in oil palm (Elaeis guineensis Jacq.) in relation to the 'mantled' somaclonal variation. J Exp Bot 59(12):3271-3281
44. Ronemus MJ, Galbiati M, Ticknor C, Chen J, Dellaporta SL (1996) Demethylation-induced developmental pleiotropy in Arabidopsis. Science 273(5275):654-657
45. Simovic N, Wolyn D, Jelenkovic G (1992) Sequence analysis of 18S ribosomal RNA gene in Fragaria 9 ananassa Duch. Cultivated octoploid strawberry. Plant Mol Biol 18(6):1217-1220
46. Singh A, Zubko E, Meyer P (2008) Cooperative activity of DNA methyltransferases for maintenance of symmetrical and non-symmetrical cytosine methylation in Arabidopsis thaliana. Plant J 56(5):814-823
47. Steward N, Kusano T, Sano H (2000) Expression of ZmMET1, a gene encoding a DNA methyltransferase from maize, is associated not only with DNA replication in actively proliferating cells, but also with altered DNA methylation status in cold-stressed quiescent cells. Nucleic Acids Res 28(17):3250-3259
48. Steward N, Ito M, Yamaguchi Y, Koizumi N, Sano H (2002) Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress. J Biol Chem 277(40):37741-37746
49. Szczygiel A, Pierzga K, Borkowska B (2002) Performance of micropropagated strawberry plantlets after planting in the field. Acta Hort 567:317-320
50. Teerawanichpan P, Chandrasekharan MB, Jiang Y, Narangajavana J, Hall TC (2004) Characterization of two rice DNA methyltrans-ferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus. Planta 218(3):337-349
51. Teyssier E, Bernacchia G, Maury S, How Kit A, Stammitti-Bert L, Rolin D, Gallusci P (2008) Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening. Planta 228(3):391-399
52. Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I et al (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313(5793):1596-1604
53. Wada Y (2005) Physiological functions of plant DNA methyltrans-ferases. Plant Biotechnol 22(2):71-80
54. Wada Y, Ohya H, Yamaguchi Y, Koizumi N, Sano H (2003) Preferential de novo methylation of cytosine residues in non-CpG sequences by a domains rearranged DNA methyltransferase from tobacco plants. J Biol Chem 278(43):42386-42393
55. Xiao M, Zhang Z, Dai H, Yang H, Li H (2005) Enhancing the stability of detection of Strawberry vein banding virus by PCR. J Fruit Sci 22(5):483-487
56. Xiao W, Custard KD, Brown RC, Lemmon BE, Harada JJ, Goldberg RB, Fischer RL (2006) DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell 18(4):805-814
57. Xiong LZ, Xu CG, Saghai Maroof MA, Zhang Q (1999) Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet 261(3):439-446
58. Zhang X, Zhang Z, Gao X, Li H, Du G (2006) Epigenetic variation in characteristics of the micro-propagated strawberry plants and their offsprings. J Fruit Sci 23(4):542-546
59. Zhu Y, Zhao HF, Ren GD, Yu XF, Cao SQ, Kuai BK (2005) Characterization of a novel developmentally retarded mutant (drm1) associated with the autonomous flowering pathway in Arabidopsis. Cell Res 15(2):133-140
60. Zluvova J, Janousek B, Vyskot B (2001) Immunohistochemical study of DNA methylation dynamics during plant development. J Exp Bot 52(365):2265-2273