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Volumn 468, Issue 1-2, 2010, Pages 30-40

Molecular phylogenetic study in genus Hydra

Author keywords

Genus Hydra; Mitochondrial DNA; Molecular phylogeny; Nuclear DNA

Indexed keywords

ARTICLE; BIOGEOGRAPHY; COELENTERATE; EVOLUTION; GENETIC DISTANCE; GENUS; GEOGRAPHIC DISTRIBUTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; STRAIN DIFFERENCE; AMINO ACID SUBSTITUTION; ANIMAL; BAYES THEOREM; CELL NUCLEUS; CLASSIFICATION; GENE EXPRESSION REGULATION; GENETICS; HYDRA; MITOCHONDRIAL GENE; MOLECULAR GENETICS; PHYLOGENY; REPRODUCIBILITY; STATISTICAL MODEL;

EID: 77957001682     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2010.08.002     Document Type: Article
Times cited : (27)

References (49)
  • 1
    • 65449182840 scopus 로고    scopus 로고
    • Hydra and the evolution of stem cells
    • Bosch T.C.G. Hydra and the evolution of stem cells. BioEssays 2009, 31:478-486.
    • (2009) BioEssays , vol.31 , pp. 478-486
    • Bosch, T.C.G.1
  • 2
    • 0034997324 scopus 로고    scopus 로고
    • Polyps, peptides and patterning
    • Bosch T.C.G., Fujisawa T. Polyps, peptides and patterning. BioEssays 2001, 23(5):420-427.
    • (2001) BioEssays , vol.23 , Issue.5 , pp. 420-427
    • Bosch, T.C.G.1    Fujisawa, T.2
  • 3
    • 0141876614 scopus 로고    scopus 로고
    • Patterning and cell differentiation in Hydra: novel genes and the limits to conservation
    • Bosch T.C.G., Khalturin K. Patterning and cell differentiation in Hydra: novel genes and the limits to conservation. Can. J. Zool. 2002, 80:1670-1677.
    • (2002) Can. J. Zool. , vol.80 , pp. 1670-1677
    • Bosch, T.C.G.1    Khalturin, K.2
  • 6
    • 0029023417 scopus 로고
    • Class-level relationships in the phylum Cnidaria: molecular and morphological evidence
    • Bridge D., Cunningham C.W., DeSalle R., Buss L.W. Class-level relationships in the phylum Cnidaria: molecular and morphological evidence. Mol. Biol. Evol. 1995, 12(4):679-689.
    • (1995) Mol. Biol. Evol. , vol.12 , Issue.4 , pp. 679-689
    • Bridge, D.1    Cunningham, C.W.2    DeSalle, R.3    Buss, L.W.4
  • 7
    • 0008687318 scopus 로고
    • Rapid evolution of animal mitochondrial DNA
    • Brown W.M., George M., Wilson A.C. Rapid evolution of animal mitochondrial DNA. PNAS 1979, 76(4):1967-1971.
    • (1979) PNAS , vol.76 , Issue.4 , pp. 1967-1971
    • Brown, W.M.1    George, M.2    Wilson, A.C.3
  • 8
    • 0020328686 scopus 로고
    • Mitochondrial. DNA sequences of primates: tempo and mode of evolution
    • Brown W.M., Prager E.M., Wang A., Wilson A.C. Mitochondrial. DNA sequences of primates: tempo and mode of evolution. J. Mol. Evol. 1982, 18:225-239.
    • (1982) J. Mol. Evol. , vol.18 , pp. 225-239
    • Brown, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 9
    • 0002148815 scopus 로고
    • Identifying Hydra species
    • Plenum Press, New York and London, (Chapter 3), H.M. Lenhov (Ed.)
    • Campbell R.D. Identifying Hydra species. Hydra: Research Methods 1983, 9-28. Plenum Press, New York and London, (Chapter 3). H.M. Lenhov (Ed.).
    • (1983) Hydra: Research Methods , pp. 9-28
    • Campbell, R.D.1
  • 10
    • 0013390753 scopus 로고
    • A new species of Hydra (Cnidaria: Hydrozoa) from North America with comments on species clusters within the genus
    • Campbell R.D. A new species of Hydra (Cnidaria: Hydrozoa) from North America with comments on species clusters within the genus. Zool. J. Linn. Soc.-Lond. 1987, 91:253-263.
    • (1987) Zool. J. Linn. Soc.-Lond. , vol.91 , pp. 253-263
    • Campbell, R.D.1
  • 11
    • 38249021537 scopus 로고
    • Taxonomy of the European Hydra (Cnidaria: Hydrozoa): a re-examination of its history with emphasis on the species H. vulgaris Pallas, H. attenuata Pallas and H. circumcincta Schulze
    • Campbell R.D. Taxonomy of the European Hydra (Cnidaria: Hydrozoa): a re-examination of its history with emphasis on the species H. vulgaris Pallas, H. attenuata Pallas and H. circumcincta Schulze. Zool. J. Linn. Soc.-Lond. 1989, 95(3):219-244.
    • (1989) Zool. J. Linn. Soc.-Lond. , vol.95 , Issue.3 , pp. 219-244
    • Campbell, R.D.1
  • 12
    • 77950080387 scopus 로고    scopus 로고
    • The dynamic genome of Hydra
    • Chapman J.A., et al. The dynamic genome of Hydra. Nature 2010, 464:592-596.
    • (2010) Nature , vol.464 , pp. 592-596
    • Chapman, J.A.1
  • 13
    • 0034455354 scopus 로고    scopus 로고
    • Towards understanding the phylogenetic history of Hydrozoa: hypothesis testing with 18S gene sequence data
    • Collins A.G. Towards understanding the phylogenetic history of Hydrozoa: hypothesis testing with 18S gene sequence data. Sci. Mar. 2000, 64:5-22.
    • (2000) Sci. Mar. , vol.64 , pp. 5-22
    • Collins, A.G.1
  • 14
    • 0036090367 scopus 로고    scopus 로고
    • Phylogeny of the Medusozoa and the evolution of cnidarian life cycles
    • Collins A.G. Phylogeny of the Medusozoa and the evolution of cnidarian life cycles. J. Evol. Biol. 2002, 15:418-432.
    • (2002) J. Evol. Biol. , vol.15 , pp. 418-432
    • Collins, A.G.1
  • 15
    • 33644600635 scopus 로고    scopus 로고
    • Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models
    • Collins A.G., Schuchert P., Marques A.C., Jankowski T., Medina M., Schierwater B. Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models. Syst. Biol. 2006, 55:97-115.
    • (2006) Syst. Biol. , vol.55 , pp. 97-115
    • Collins, A.G.1    Schuchert, P.2    Marques, A.C.3    Jankowski, T.4    Medina, M.5    Schierwater, B.6
  • 16
    • 0028554767 scopus 로고
    • The distribution and ecology of the fresh-and brackish-water medusae of the world
    • Dumont H.G. The distribution and ecology of the fresh-and brackish-water medusae of the world. Hydrobiologia 1994, 272:1-12.
    • (1994) Hydrobiologia , vol.272 , pp. 1-12
    • Dumont, H.G.1
  • 17
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 18
    • 0030464460 scopus 로고    scopus 로고
    • SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N., Gouy M., Gautier C. SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 1996, 12:543-548.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 19
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 21
    • 33645574750 scopus 로고    scopus 로고
    • No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
    • Hellberg M.E. No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation. BMC Evol. Biol. 2006, 6:24.
    • (2006) BMC Evol. Biol. , vol.6 , pp. 24
    • Hellberg, M.E.1
  • 22
    • 34249746341 scopus 로고    scopus 로고
    • Molecular phylogenetics in Hydra, a classical model in evolutionary developmental biology
    • Hemmrich G., Anokhin B., Zacharias H., Bosch T.C.G. Molecular phylogenetics in Hydra, a classical model in evolutionary developmental biology. Mol. Phylogenet. Evol. 2007, 44:281-290.
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 281-290
    • Hemmrich, G.1    Anokhin, B.2    Zacharias, H.3    Bosch, T.C.G.4
  • 23
    • 0037310204 scopus 로고    scopus 로고
    • Cnidarians: an evolutionarily conserved model system for regeneration?
    • Holstein T.W., Hobmayer E., Technau U. Cnidarians: an evolutionarily conserved model system for regeneration?. Dev. Dyn. 2003, 226:257-267.
    • (2003) Dev. Dyn. , vol.226 , pp. 257-267
    • Holstein, T.W.1    Hobmayer, E.2    Technau, U.3
  • 24
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: bayesian inference of phylogeny
    • Huelsenbeck J.P., Ronquist F. MRBAYES: bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 25
    • 70450284020 scopus 로고
    • On a new species of fresh-water polyp from Japan
    • Science reports of The Tohoku Univ
    • Ito T. On a new species of fresh-water polyp from Japan. 4th Ser. (Biology) 1947, 18:1-5.
    • (1947) 4th Ser. (Biology) , vol.18 , pp. 1-5
    • Ito, T.1
  • 26
    • 0008220574 scopus 로고
    • A new fresh-water polyp, Hydra magnipapillata, N. SP. from Japan
    • Science reports of The Tohoku Univ
    • Ito T. A new fresh-water polyp, Hydra magnipapillata, N. SP. from Japan. 4th Ser. (Biology) 1947, 18:6-10.
    • (1947) 4th Ser. (Biology) , vol.18 , pp. 6-10
    • Ito, T.1
  • 27
    • 77956984562 scopus 로고
    • Description of a new Pelmatohydra from Japan
    • Science reports of The Tohoku Univ
    • Ito T. Description of a new Pelmatohydra from Japan. 4th Ser. (Biology) 1947, 18:11-16.
    • (1947) 4th Ser. (Biology) , vol.18 , pp. 11-16
    • Ito, T.1
  • 28
    • 84933694566 scopus 로고
    • Two new species of fresh-water polyp from Japan
    • Science reports of The Tohoku Univ
    • Ito T. Two new species of fresh-water polyp from Japan. 4th Ser. (Biology) 1947, 18:17-23.
    • (1947) 4th Ser. (Biology) , vol.18 , pp. 17-23
    • Ito, T.1
  • 30
    • 40649123235 scopus 로고    scopus 로고
    • The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny
    • Kayal E., Lavrov D.V. The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny. Gene 2008, 410:177-186.
    • (2008) Gene , vol.410 , pp. 177-186
    • Kayal, E.1    Lavrov, D.V.2
  • 32
    • 0023737547 scopus 로고
    • Deleterious mutations and the evolution of sexual reproduction
    • Kondrashov A.S. Deleterious mutations and the evolution of sexual reproduction. Nature 1988, 336:435-440.
    • (1988) Nature , vol.336 , pp. 435-440
    • Kondrashov, A.S.1
  • 33
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S., Dudley J., Nei M., Tamura K. MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 2008, 9:299-306.
    • (2008) Brief. Bioinform. , vol.9 , pp. 299-306
    • Kumar, S.1    Dudley, J.2    Nei, M.3    Tamura, K.4
  • 34
    • 0030845166 scopus 로고    scopus 로고
    • Synonymous substitution rates in Drosophila: mitochondrial versus nuclear genes
    • Moriyama E.N., Powell J.R. Synonymous substitution rates in Drosophila: mitochondrial versus nuclear genes. J. Mol. Evol. 1997, 45(4):378-391.
    • (1997) J. Mol. Evol. , vol.45 , Issue.4 , pp. 378-391
    • Moriyama, E.N.1    Powell, J.R.2
  • 35
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 1986, 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 37
    • 77956987491 scopus 로고    scopus 로고
    • Phylum Cnidaria
    • Oxford University Press Inc, New York, (Chapter 8)
    • Nielsen C. Phylum Cnidaria. Animal evolution 2001, 59-69. Oxford University Press Inc, New York, (Chapter 8). 2nd ed.
    • (2001) Animal evolution , pp. 59-69
    • Nielsen, C.1
  • 38
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic Model Averaging
    • Posada D. jModelTest: phylogenetic Model Averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 39
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 40
    • 0036897723 scopus 로고    scopus 로고
    • Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
    • Shearer T.L., van Oppen M.J.H., Romano S.L., Wörheide G. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol. Ecol. 2002, 11:2475-2487.
    • (2002) Mol. Ecol. , vol.11 , pp. 2475-2487
    • Shearer, T.L.1    van Oppen, M.J.H.2    Romano, S.L.3    Wörheide, G.4
  • 41
    • 0036038580 scopus 로고    scopus 로고
    • Developmental signaling in Hydra: what does it take to build a "simple" animal?
    • Steele R.E. Developmental signaling in Hydra: what does it take to build a "simple" animal?. Dev. Biol. 2002, 248(2):199-219.
    • (2002) Dev. Biol. , vol.248 , Issue.2 , pp. 199-219
    • Steele, R.E.1
  • 42
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 43
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 24:4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 32044468096 scopus 로고    scopus 로고
    • Foot differentiation and genomic plasticity in Hydra: lessons from the PPOD gene family
    • Thomsen S., Bosch T.C.G. Foot differentiation and genomic plasticity in Hydra: lessons from the PPOD gene family. Dev. Genes Evol. 2006, 216:57-68.
    • (2006) Dev. Genes Evol. , vol.216 , pp. 57-68
    • Thomsen, S.1    Bosch, T.C.G.2
  • 46
    • 77956998491 scopus 로고    scopus 로고
    • Oxford University Press Inc, New York, (Chapter 6)
    • Tudge C. The Variety Of Life 2000, 211-224. Oxford University Press Inc, New York, (Chapter 6).
    • (2000) The Variety Of Life , pp. 211-224
    • Tudge, C.1
  • 47
    • 50049084794 scopus 로고    scopus 로고
    • A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata
    • Voigt O., Erpenbeck D., Wörheide G. A fragmented metazoan organellar genome: the two mitochondrial chromosomes of Hydra magnipapillata. BMC Genomics 2008, 9:350.
    • (2008) BMC Genomics , vol.9 , pp. 350
    • Voigt, O.1    Erpenbeck, D.2    Wörheide, G.3
  • 48
    • 70450250242 scopus 로고    scopus 로고
    • A new species of green Hydra (Hydrozoa: Hydrida) from China
    • Wang An-Tai, Li Deng, Lai Jing-Qi, Juan Li A new species of green Hydra (Hydrozoa: Hydrida) from China. Zool. Sci. 2009, 26:664-668.
    • (2009) Zool. Sci. , vol.26 , pp. 664-668
    • Wang, A.-T.1    Li Deng2    Lai, J.-Q.3    Juan Li4


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