-
2
-
-
65449185894
-
Vibrio vulnificus: Disease and pathogenesis
-
10.1128/IAI.01046-08, 2681776, 19255188
-
Oliver JD, Jones MK. Vibrio vulnificus: Disease and pathogenesis. Infect Immun 2009, 77:1723-1733. 10.1128/IAI.01046-08, 2681776, 19255188.
-
(2009)
Infect Immun
, vol.77
, pp. 1723-1733
-
-
Oliver, J.D.1
Jones, M.K.2
-
3
-
-
0023116740
-
Correlation between virulence and colony morphology in Vibrio vulnificus
-
260315, 2432016
-
Simpson LM, White VK, Zane SF, Oliver JD. Correlation between virulence and colony morphology in Vibrio vulnificus. Infect Immun 1987, 55:269-272. 260315, 2432016.
-
(1987)
Infect Immun
, vol.55
, pp. 269-272
-
-
Simpson, L.M.1
White, V.K.2
Zane, S.F.3
Oliver, J.D.4
-
4
-
-
0025290788
-
Phenotypic evaluation of acapsular transposon mutants of Vibrio vulnificus
-
258721, 2160432
-
Wright AC, Simpson LM, Oliver JD, Morris JG. Phenotypic evaluation of acapsular transposon mutants of Vibrio vulnificus. Infect Immun 1990, 58:1769-1773. 258721, 2160432.
-
(1990)
Infect Immun
, vol.58
, pp. 1769-1773
-
-
Wright, A.C.1
Simpson, L.M.2
Oliver, J.D.3
Morris, J.G.4
-
5
-
-
34447260073
-
The HlyU protein is a positive regulator of rtxA1, a gene responsible for cytotoxicity and virulence in the human pathogen Vibrio vulnificus
-
10.1128/IAI.00045-07, 1932941, 17438022
-
Liu M, Alice AF, Naka H, Crosa JH. The HlyU protein is a positive regulator of rtxA1, a gene responsible for cytotoxicity and virulence in the human pathogen Vibrio vulnificus. Infect Immun 2007, 75:3282-3289. 10.1128/IAI.00045-07, 1932941, 17438022.
-
(2007)
Infect Immun
, vol.75
, pp. 3282-3289
-
-
Liu, M.1
Alice, A.F.2
Naka, H.3
Crosa, J.H.4
-
6
-
-
34248208219
-
Identification and characterization of the Vibrio vulnificus rtxA essential for cytotoxicity in vitro and virulence in mice
-
Lee JH, Kim MW, Kim BS, Kim SM, Lee BC, Kim TS, Choi SH. Identification and characterization of the Vibrio vulnificus rtxA essential for cytotoxicity in vitro and virulence in mice. J Microbiol 2007, 45:146-152.
-
(2007)
J Microbiol
, vol.45
, pp. 146-152
-
-
Lee, J.H.1
Kim, M.W.2
Kim, B.S.3
Kim, S.M.4
Lee, B.C.5
Kim, T.S.6
Choi, S.H.7
-
7
-
-
40749157602
-
Vibrio vulnificus RTX toxin kills host cells only after contact of the bacteria with host cells
-
10.1111/j.1462-5822.2007.01088.x, 18005241
-
Kim YR, Lee SE, Kook H, Yeom JA, Na HS, Kim SY, Chung SS, Choy HE, Rhee JH. Vibrio vulnificus RTX toxin kills host cells only after contact of the bacteria with host cells. Cell Microbiol 2008, 10:848-862. 10.1111/j.1462-5822.2007.01088.x, 18005241.
-
(2008)
Cell Microbiol
, vol.10
, pp. 848-862
-
-
Kim, Y.R.1
Lee, S.E.2
Kook, H.3
Yeom, J.A.4
Na, H.S.5
Kim, S.Y.6
Chung, S.S.7
Choy, H.E.8
Rhee, J.H.9
-
8
-
-
0030012953
-
Role of catechol siderophore synthesis in Vibrio vulnificus virulence
-
174150, 8698519
-
Litwin CM, Rayback TW, Skinner J. Role of catechol siderophore synthesis in Vibrio vulnificus virulence. Infect Immun 1996, 64:2834-2838. 174150, 8698519.
-
(1996)
Infect Immun
, vol.64
, pp. 2834-2838
-
-
Litwin, C.M.1
Rayback, T.W.2
Skinner, J.3
-
9
-
-
0019840322
-
Role of iron in the pathogenesis of Vibrio vulnificus infections
-
350895, 7309236
-
Wright AC, Simpson LM, Oliver JD. Role of iron in the pathogenesis of Vibrio vulnificus infections. Infect Immun 1981, 34:503-507. 350895, 7309236.
-
(1981)
Infect Immun
, vol.34
, pp. 503-507
-
-
Wright, A.C.1
Simpson, L.M.2
Oliver, J.D.3
-
10
-
-
15544368041
-
A Vibrio vulnificus type IV pilin contributes to biofilm formation, adherence to epithelial cells, and virulence
-
10.1128/IAI.73.3.1411-1422.2005, 1064924, 15731039
-
Paranjpye RN, Strom MS. A Vibrio vulnificus type IV pilin contributes to biofilm formation, adherence to epithelial cells, and virulence. Infect Immun 2005, 73:1411-1422. 10.1128/IAI.73.3.1411-1422.2005, 1064924, 15731039.
-
(2005)
Infect Immun
, vol.73
, pp. 1411-1422
-
-
Paranjpye, R.N.1
Strom, M.S.2
-
11
-
-
0031741393
-
The type IV leader peptidase/N-methyltransferase of Vibrio vulnificus controls factors required for adherence to HEp-2 cells and virulence in iron-overloaded mice
-
108715, 9826339
-
Paranjpye RN, Lara JC, Pepe JC, Pepe CM, Strom MS. The type IV leader peptidase/N-methyltransferase of Vibrio vulnificus controls factors required for adherence to HEp-2 cells and virulence in iron-overloaded mice. Infect Immun 1998, 66:5659-5668. 108715, 9826339.
-
(1998)
Infect Immun
, vol.66
, pp. 5659-5668
-
-
Paranjpye, R.N.1
Lara, J.C.2
Pepe, J.C.3
Pepe, C.M.4
Strom, M.S.5
-
12
-
-
0037414463
-
Flagellar basal body flg operon as a virulence determinant of Vibrio vulnificus
-
10.1016/S0006-291X(03)00613-2, 12711330
-
Kim YR, Rhee JH. Flagellar basal body flg operon as a virulence determinant of Vibrio vulnificus. Biochem Biophys Res Commun 2003, 304:405-410. 10.1016/S0006-291X(03)00613-2, 12711330.
-
(2003)
Biochem Biophys Res Commun
, vol.304
, pp. 405-410
-
-
Kim, Y.R.1
Rhee, J.H.2
-
13
-
-
3342927580
-
Role of flagellum and motility in pathogenesis of Vibrio vulnificus
-
10.1128/IAI.72.8.4905-4910.2004, 470688, 15271959
-
Lee JH, Rho JB, Park KJ, Kim CB, Han YS, Choi SH, Lee KH, Park SJ. Role of flagellum and motility in pathogenesis of Vibrio vulnificus. Infect Immun 2004, 72:4905-4910. 10.1128/IAI.72.8.4905-4910.2004, 470688, 15271959.
-
(2004)
Infect Immun
, vol.72
, pp. 4905-4910
-
-
Lee, J.H.1
Rho, J.B.2
Park, K.J.3
Kim, C.B.4
Han, Y.S.5
Choi, S.H.6
Lee, K.H.7
Park, S.J.8
-
14
-
-
0020189696
-
Vibrio vulnificus biogroup 2:new biogroup pathogenic for eels
-
242070, 7138004
-
Tison DL, Nishibuchi M, Greenwood JD, Seidler RJ. Vibrio vulnificus biogroup 2:new biogroup pathogenic for eels. Appl Environ Microbiol 1982, 44:640-646. 242070, 7138004.
-
(1982)
Appl Environ Microbiol
, vol.44
, pp. 640-646
-
-
Tison, D.L.1
Nishibuchi, M.2
Greenwood, J.D.3
Seidler, R.J.4
-
15
-
-
0033598652
-
Clinical, epidemiological, and microbiological features of Vibrio vulnificus biogroup 3 causing outbreaks of wound infection and bacteraemia in Israel. Israel Vibrio Study Group
-
10.1016/S0140-6736(99)02471-X, 10543668
-
Bisharat N, Agmon V, Finkelstein R, Raz R, Ben Dror G, Lerner L, Soboh S, Colodner R, Cameron DN, Wykstra DL, Swerdlow DL, Farmer JJ. Clinical, epidemiological, and microbiological features of Vibrio vulnificus biogroup 3 causing outbreaks of wound infection and bacteraemia in Israel. Israel Vibrio Study Group. Lancet 1999, 354:1421-1424. 10.1016/S0140-6736(99)02471-X, 10543668.
-
(1999)
Lancet
, vol.354
, pp. 1421-1424
-
-
Bisharat, N.1
Agmon, V.2
Finkelstein, R.3
Raz, R.4
Ben Dror, G.5
Lerner, L.6
Soboh, S.7
Colodner, R.8
Cameron, D.N.9
Wykstra, D.L.10
Swerdlow, D.L.11
Farmer, J.J.12
-
16
-
-
0037234695
-
Sequence polymorphism of the 16 S rRNA gene of Vibrio vulnificus is a possible indicator of strain virulence
-
10.1128/JCM.41.1.442-446.2003, 149629, 12517889
-
Nilsson WB, Paranjpye RN, DePaola A, Strom MS. Sequence polymorphism of the 16 S rRNA gene of Vibrio vulnificus is a possible indicator of strain virulence. J Clin Microbiol 2003, 41:442-446. 10.1128/JCM.41.1.442-446.2003, 149629, 12517889.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 442-446
-
-
Nilsson, W.B.1
Paranjpye, R.N.2
DePaola, A.3
Strom, M.S.4
-
17
-
-
34948852834
-
Typing of Vibrio vulnificus strains by variability in their 16S-23 S rRNA intergenic spacer regions
-
10.1089/fpd.2007.0005, 17883316
-
Gonzalez-Escalona N, Jaykus LA, DePaola A. Typing of Vibrio vulnificus strains by variability in their 16S-23 S rRNA intergenic spacer regions. Foodborne Pathog Dis 2007, 4:327-337. 10.1089/fpd.2007.0005, 17883316.
-
(2007)
Foodborne Pathog Dis
, vol.4
, pp. 327-337
-
-
Gonzalez-Escalona, N.1
Jaykus, L.A.2
DePaola, A.3
-
18
-
-
11844260058
-
Hybrid Vibrio vulnificus
-
Bisharat N, Cohen DI, Harding RM, Falush D, Crook DW, Peto T, Maiden MC. Hybrid Vibrio vulnificus. Emerg Infect Dis 2005, 11:30-35.
-
(2005)
Emerg Infect Dis
, vol.11
, pp. 30-35
-
-
Bisharat, N.1
Cohen, D.I.2
Harding, R.M.3
Falush, D.4
Crook, D.W.5
Peto, T.6
Maiden, M.C.7
-
19
-
-
35449005658
-
The evolution of genetic structure in the marine pathogen, Vibrio vulnificus
-
10.1016/j.meegid.2007.07.007, 17716955
-
Bisharat N, Cohen DI, Maiden MC, Crook DW, Peto T, Harding RM. The evolution of genetic structure in the marine pathogen, Vibrio vulnificus. Infect Genet Evol 2007, 7:685-693. 10.1016/j.meegid.2007.07.007, 17716955.
-
(2007)
Infect Genet Evol
, vol.7
, pp. 685-693
-
-
Bisharat, N.1
Cohen, D.I.2
Maiden, M.C.3
Crook, D.W.4
Peto, T.5
Harding, R.M.6
-
20
-
-
34548487133
-
Emergence of a virulent clade of Vibrio vulnificus and correlation with the presence of a 33-kilobase genomic island
-
10.1128/AEM.00635-07, 2042058, 17616611
-
Cohen AL, Oliver JD, DePaola A, Feil EJ, Boyd EF. Emergence of a virulent clade of Vibrio vulnificus and correlation with the presence of a 33-kilobase genomic island. Appl Environ Microbiol 2007, 73:5553-5565. 10.1128/AEM.00635-07, 2042058, 17616611.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5553-5565
-
-
Cohen, A.L.1
Oliver, J.D.2
DePaola, A.3
Feil, E.J.4
Boyd, E.F.5
-
21
-
-
18244401623
-
A rapid and simple PCR analysis indicates there are two subgroups of Vibrio vulnificus which correlate with clinical or environmental isolation
-
Rosche TM, Yano Y, Oliver JD. A rapid and simple PCR analysis indicates there are two subgroups of Vibrio vulnificus which correlate with clinical or environmental isolation. Microbiol Immunol 2005, 49:381-389.
-
(2005)
Microbiol Immunol
, vol.49
, pp. 381-389
-
-
Rosche, T.M.1
Yano, Y.2
Oliver, J.D.3
-
22
-
-
74549145564
-
Correlation of mannitol fermentation with virulence-associated genotypic characteristics in Vibrio vulnificus isolates from oysters and water samples in the Gulf of Mexico
-
10.1089/fpd.2009.0362, 19785540
-
Drake SL, Whitney B, Levine JF, DePaola A, Jaykus LA. Correlation of mannitol fermentation with virulence-associated genotypic characteristics in Vibrio vulnificus isolates from oysters and water samples in the Gulf of Mexico. Foodborne Pathog Dis 2010, 7:97-101. 10.1089/fpd.2009.0362, 19785540.
-
(2010)
Foodborne Pathog Dis
, vol.7
, pp. 97-101
-
-
Drake, S.L.1
Whitney, B.2
Levine, J.F.3
DePaola, A.4
Jaykus, L.A.5
-
23
-
-
0033796597
-
Pathogenesis of infection by clinical and environmental strains of Vibrio vulnificus in iron dextran-treated mice
-
10.1128/IAI.68.10.5785-5793.2000, 101538, 10992486
-
Starks AM, Schoeb TR, Tamplin ML, Parveen S, Doyle TJ, Bomeisl PE, Escudero GM, Gulig PA. Pathogenesis of infection by clinical and environmental strains of Vibrio vulnificus in iron dextran-treated mice. Infect Immun 2000, 68:5785-5793. 10.1128/IAI.68.10.5785-5793.2000, 101538, 10992486.
-
(2000)
Infect Immun
, vol.68
, pp. 5785-5793
-
-
Starks, A.M.1
Schoeb, T.R.2
Tamplin, M.L.3
Parveen, S.4
Doyle, T.J.5
Bomeisl, P.E.6
Escudero, G.M.7
Gulig, P.A.8
-
24
-
-
33748478588
-
Use of a marker plasmid to examine growth and death of Vibrio vulnificus in infected mice
-
10.1111/j.1365-2958.2006.05227.x, 16856938
-
Starks AM, Bourdage KL, Thiaville PC, Gulig PA. Use of a marker plasmid to examine growth and death of Vibrio vulnificus in infected mice. Mol Microbiol 2006, 61:310-323. 10.1111/j.1365-2958.2006.05227.x, 16856938.
-
(2006)
Mol Microbiol
, vol.61
, pp. 310-323
-
-
Starks, A.M.1
Bourdage, K.L.2
Thiaville, P.C.3
Gulig, P.A.4
-
25
-
-
0037478989
-
Analysis of Vibrio vulnificus from market oysters and septicemia cases for virulence markers
-
10.1128/AEM.69.7.4006-4011.2003, 165197, 12839775
-
DePaola A, Nordstrom JL, Dalsgaard A, Forslund A, Oliver JD, Bates T, Bourdage KL, Gulig PA. Analysis of Vibrio vulnificus from market oysters and septicemia cases for virulence markers. Appl Environ Microbiol 2003, 69:4006-4011. 10.1128/AEM.69.7.4006-4011.2003, 165197, 12839775.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4006-4011
-
-
DePaola, A.1
Nordstrom, J.L.2
Dalsgaard, A.3
Forslund, A.4
Oliver, J.D.5
Bates, T.6
Bourdage, K.L.7
Gulig, P.A.8
-
26
-
-
0027230716
-
Presence of a capsule in Vibrio vulnificus biotype 2 and its relationship to virulence for eels
-
280742, 8478049
-
Biosca EG, Llorens H, Garay E, Amaro C. Presence of a capsule in Vibrio vulnificus biotype 2 and its relationship to virulence for eels. Infect Immun 1993, 61:1611-1618. 280742, 8478049.
-
(1993)
Infect Immun
, vol.61
, pp. 1611-1618
-
-
Biosca, E.G.1
Llorens, H.2
Garay, E.3
Amaro, C.4
-
27
-
-
55549097836
-
Mapping short DNA sequencing reads and calling variants using mapping quality scores
-
10.1101/gr.078212.108, 2577856, 18714091
-
Li H, Ruan J, Durbin R. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 2008, 18:1851-1858. 10.1101/gr.078212.108, 2577856, 18714091.
-
(2008)
Genome Res
, vol.18
, pp. 1851-1858
-
-
Li, H.1
Ruan, J.2
Durbin, R.3
-
28
-
-
39749085184
-
A common virulence plasmid in biotype 2 Vibrio vulnificus and its dissemination aided by a conjugal plasmid
-
10.1128/JB.01484-07, 2258666, 18156267
-
Lee CT, Amaro C, Wu KM, Valiente E, Chang YF, Tsai SF, Chang CH, Hor LI. A common virulence plasmid in biotype 2 Vibrio vulnificus and its dissemination aided by a conjugal plasmid. J Bacteriol 2008, 190:1638-1648. 10.1128/JB.01484-07, 2258666, 18156267.
-
(2008)
J Bacteriol
, vol.190
, pp. 1638-1648
-
-
Lee, C.T.1
Amaro, C.2
Wu, K.M.3
Valiente, E.4
Chang, Y.F.5
Tsai, S.F.6
Chang, C.H.7
Hor, L.I.8
-
29
-
-
0022446725
-
Plasmid carriage in Vibrio vulnificus and other lactose- fermenting marine vibrios
-
203455, 3729404
-
Davidson LS, Oliver JD. Plasmid carriage in Vibrio vulnificus and other lactose- fermenting marine vibrios. Appl Environ Microbiol 1986, 52:211-213. 203455, 3729404.
-
(1986)
Appl Environ Microbiol
, vol.52
, pp. 211-213
-
-
Davidson, L.S.1
Oliver, J.D.2
-
30
-
-
10744231052
-
Comparative genome analysis of Vibrio vulnificus, a marine pathogen
-
10.1101/gr.1295503, 403799, 14656965
-
Chen CY, Wu KM, Chang YC, Chang CH, Tsai HC, Liao TL, Liu YM, Chen HJ, Shen AB, Li JC, Su TL, Shao CP, Lee CT, Hor LI, Tsai SF. Comparative genome analysis of Vibrio vulnificus, a marine pathogen. Genome Res 2003, 13:2577-2587. 10.1101/gr.1295503, 403799, 14656965.
-
(2003)
Genome Res
, vol.13
, pp. 2577-2587
-
-
Chen, C.Y.1
Wu, K.M.2
Chang, Y.C.3
Chang, C.H.4
Tsai, H.C.5
Liao, T.L.6
Liu, Y.M.7
Chen, H.J.8
Shen, A.B.9
Li, J.C.10
Su, T.L.11
Shao, C.P.12
Lee, C.T.13
Hor, L.I.14
Tsai, S.F.15
-
31
-
-
65549153156
-
The integron/gene cassette system: an active player in bacterial adaptation
-
full_text, 19271181
-
Labbate M, Case RJ, Stokes HW. The integron/gene cassette system: an active player in bacterial adaptation. Methods Mol Biol 2009, 532:103-125. full_text, 19271181.
-
(2009)
Methods Mol Biol
, vol.532
, pp. 103-125
-
-
Labbate, M.1
Case, R.J.2
Stokes, H.W.3
-
32
-
-
0032562596
-
A distinctive class of integron in the Vibrio cholerae genome
-
10.1126/science.280.5363.605, 9554855
-
Mazel D, Dychinco B, Webb VA, Davies J. A distinctive class of integron in the Vibrio cholerae genome. Science 1998, 280:605-608. 10.1126/science.280.5363.605, 9554855.
-
(1998)
Science
, vol.280
, pp. 605-608
-
-
Mazel, D.1
Dychinco, B.2
Webb, V.A.3
Davies, J.4
-
33
-
-
33846847846
-
C-di-GMP-mediated regulation of virulence and biofilm formation
-
10.1016/j.mib.2006.12.006, 17208514
-
Cotter PA, Stibitz S. c-di-GMP-mediated regulation of virulence and biofilm formation. Curr Opin Microbiol 2007, 10:17-23. 10.1016/j.mib.2006.12.006, 17208514.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 17-23
-
-
Cotter, P.A.1
Stibitz, S.2
-
34
-
-
0034999675
-
Flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans
-
10.1046/j.1365-2958.2001.02422.x, 11359562
-
Kachlany SC, Planet PJ, DeSalle R, Fine DH, Figurski DH, Kaplan JB. flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans. Mol Microbiol 2001, 40:542-554. 10.1046/j.1365-2958.2001.02422.x, 11359562.
-
(2001)
Mol Microbiol
, vol.40
, pp. 542-554
-
-
Kachlany, S.C.1
Planet, P.J.2
DeSalle, R.3
Fine, D.H.4
Figurski, D.H.5
Kaplan, J.B.6
-
35
-
-
0024239524
-
Sulfated glycolipids and cell adhesion
-
10.1016/0003-9861(88)90046-X, 3063211
-
Roberts DD, Ginsburg V. Sulfated glycolipids and cell adhesion. Arch Biochem Biophys 1988, 267:405-415. 10.1016/0003-9861(88)90046-X, 3063211.
-
(1988)
Arch Biochem Biophys
, vol.267
, pp. 405-415
-
-
Roberts, D.D.1
Ginsburg, V.2
-
36
-
-
0025738161
-
Galactosyl ceramide or a derivative is an essential component of the neural receptor for human immunodeficiency virus type 1 envelope glycoprotein gp120
-
10.1073/pnas.88.16.7131, 52247, 1871126
-
Bhat S, Spitalnik SL, Gonzalez-Scarano F, Silberberg DH. Galactosyl ceramide or a derivative is an essential component of the neural receptor for human immunodeficiency virus type 1 envelope glycoprotein gp120. Proc Natl Acad Sci USA 1991, 88:7131-7134. 10.1073/pnas.88.16.7131, 52247, 1871126.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 7131-7134
-
-
Bhat, S.1
Spitalnik, S.L.2
Gonzalez-Scarano, F.3
Silberberg, D.H.4
-
37
-
-
0028148526
-
Sulfated glycoconjugate receptors for the Bordetella pertussis adhesin filamentous hemagglutinin (FHA) and mapping of the heparin-binding domain on FHA
-
303220, 7927782
-
Hannah JH, Menozzi FD, Renauld G, Locht C, Brennan MJ. Sulfated glycoconjugate receptors for the Bordetella pertussis adhesin filamentous hemagglutinin (FHA) and mapping of the heparin-binding domain on FHA. Infect Immun 1994, 62:5010-5019. 303220, 7927782.
-
(1994)
Infect Immun
, vol.62
, pp. 5010-5019
-
-
Hannah, J.H.1
Menozzi, F.D.2
Renauld, G.3
Locht, C.4
Brennan, M.J.5
-
38
-
-
0030034635
-
Role of sulfatides in adhesion of Helicobacter pylori to gastric cancer cells
-
173811, 8550217
-
Kamisago S, Iwamori M, Tai T, Mitamura K, Yazaki Y, Sugano K. Role of sulfatides in adhesion of Helicobacter pylori to gastric cancer cells. Infect Immun 1996, 64:624-628. 173811, 8550217.
-
(1996)
Infect Immun
, vol.64
, pp. 624-628
-
-
Kamisago, S.1
Iwamori, M.2
Tai, T.3
Mitamura, K.4
Yazaki, Y.5
Sugano, K.6
-
39
-
-
0033849911
-
Escherichia coliK1 aslA contributes to invasion of brain microvascular endothelial cells in vitro and in vivo
-
10.1128/IAI.68.9.5062-5067.2000, 101739, 10948126
-
Hoffman JA, Badger JL, Zhang Y, Huang SH, Kim KS. Escherichia coliK1 aslA contributes to invasion of brain microvascular endothelial cells in vitro and in vivo. Infect Immun 2000, 68:5062-5067. 10.1128/IAI.68.9.5062-5067.2000, 101739, 10948126.
-
(2000)
Infect Immun
, vol.68
, pp. 5062-5067
-
-
Hoffman, J.A.1
Badger, J.L.2
Zhang, Y.3
Huang, S.H.4
Kim, K.S.5
-
40
-
-
0023378316
-
Use of sodium dodecyl sulfate-polymyxin B-sucrose medium for isolation of Vibrio vulnificus from shellfish
-
203909, 3662506
-
Bryant RG, Jarvis J, Janda JM. Use of sodium dodecyl sulfate-polymyxin B-sucrose medium for isolation of Vibrio vulnificus from shellfish. Appl Environ Microbiol 1987, 53:1556-1559. 203909, 3662506.
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 1556-1559
-
-
Bryant, R.G.1
Jarvis, J.2
Janda, J.M.3
-
41
-
-
67449122992
-
Insights into the evolution of sialic acid catabolism among bacteria
-
10.1186/1471-2148-9-118, 2693436, 19470179
-
Almagro-Moreno S, Boyd EF. Insights into the evolution of sialic acid catabolism among bacteria. BMC Evol Biol 2009, 9:118. 10.1186/1471-2148-9-118, 2693436, 19470179.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 118
-
-
Almagro-Moreno, S.1
Boyd, E.F.2
-
42
-
-
67651213994
-
The capability of catabolic utilization of N-acetylneuraminic acid, a sialic acid, is essential for Vibrio vulnificus pathogenesis
-
10.1128/IAI.00109-09, 2715665, 19487477
-
Jeong HG, Oh MH, Kim BS, Lee MY, Han HJ, Choi SH. The capability of catabolic utilization of N-acetylneuraminic acid, a sialic acid, is essential for Vibrio vulnificus pathogenesis. Infect Immun 2009, 77:3209-3217. 10.1128/IAI.00109-09, 2715665, 19487477.
-
(2009)
Infect Immun
, vol.77
, pp. 3209-3217
-
-
Jeong, H.G.1
Oh, M.H.2
Kim, B.S.3
Lee, M.Y.4
Han, H.J.5
Choi, S.H.6
-
43
-
-
67650532135
-
Genomic and systems evolution in Vibrionaceae species
-
10.1186/1471-2164-10-S1-S11, 2709254, 19594870
-
Gu J, Neary J, Cai H, Moshfeghian A, Rodriguez SA, Lilburn TG, Wang Y. Genomic and systems evolution in Vibrionaceae species. BMC Genomics 2009, 10(Suppl 1):S11. 10.1186/1471-2164-10-S1-S11, 2709254, 19594870.
-
(2009)
BMC Genomics
, vol.10
, Issue.SUPPL. 1
-
-
Gu, J.1
Neary, J.2
Cai, H.3
Moshfeghian, A.4
Rodriguez, S.A.5
Lilburn, T.G.6
Wang, Y.7
-
44
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus-influenzae Rd
-
10.1126/science.7542800, 7542800
-
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM, McKenney K, Sutton G, Fitzhugh W, Fields C, Gocayne JD, Scott J, Shirley R, Liu LI, Glodek A, Kelley JM, Weidman JF, Phillips CA, Spriggs T, Hedblom E, Cotton MD, Utterback TR, Hanna MC, Nguyen DT, Saudek DM, Brandon RC, Fine LD, Fritchman JL, Fuhrmann JL, Geoghagen NSM, Gnehm CL, McDonald LA, Small KV, Fraser CM, Smith HO, Venter JC. Whole-genome random sequencing and assembly of Haemophilus-influenzae Rd. Science 1995, 269:496-512. 10.1126/science.7542800, 7542800.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
Fitzhugh, W.13
Fields, C.14
Gocayne, J.D.15
Scott, J.16
Shirley, R.17
Liu, L.I.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.R.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Fuhrmann, J.L.33
Geoghagen, N.S.M.34
Gnehm, C.L.35
McDonald, L.A.36
Small, K.V.37
Fraser, C.M.38
Smith, H.O.39
Venter, J.C.40
more..
-
45
-
-
34249723655
-
Advanced sequencing technologies and their wider impact in microbiology
-
10.1242/jeb.001370, 17449817
-
Hall N. Advanced sequencing technologies and their wider impact in microbiology. J Exp Biol 2007, 210:1518-1525. 10.1242/jeb.001370, 17449817.
-
(2007)
J Exp Biol
, vol.210
, pp. 1518-1525
-
-
Hall, N.1
-
46
-
-
0017681196
-
DNA sequencing with chain-terminating inhibitors
-
10.1073/pnas.74.12.5463, 431765, 271968
-
Sanger F, Nicklen S, Coulson AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 1977, 74:5463-5467. 10.1073/pnas.74.12.5463, 431765, 271968.
-
(1977)
Proc Natl Acad Sci USA
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
47
-
-
36849073678
-
Sequencing breakthroughs for genomic ecology and evolutionary biology
-
Hudson ME. Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol Ecol Resour 2008, 8:3-17.
-
(2008)
Mol Ecol Resour
, vol.8
, pp. 3-17
-
-
Hudson, M.E.1
-
48
-
-
39649117755
-
The impact of next-generation sequencing technology on genetics
-
Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-141.
-
(2008)
Trends Genet
, vol.24
, pp. 133-141
-
-
Mardis, E.R.1
-
49
-
-
53649088131
-
Applications of next-generation sequencing technologies in functional genomics
-
10.1016/j.ygeno.2008.07.001, 18703132
-
Morozova O, Marra MA. Applications of next-generation sequencing technologies in functional genomics. Genomics 2008, 92:255-264. 10.1016/j.ygeno.2008.07.001, 18703132.
-
(2008)
Genomics
, vol.92
, pp. 255-264
-
-
Morozova, O.1
Marra, M.A.2
-
50
-
-
58249138817
-
Generations of sequencing technologies
-
10.1016/j.ygeno.2008.10.003, 18992322
-
Pettersson E, Lundeberg J, Ahmadian A. Generations of sequencing technologies. Genomics 2009, 93:105-111. 10.1016/j.ygeno.2008.10.003, 18992322.
-
(2009)
Genomics
, vol.93
, pp. 105-111
-
-
Pettersson, E.1
Lundeberg, J.2
Ahmadian, A.3
-
51
-
-
53649100100
-
The development and impact of 454 sequencing
-
10.1038/nbt1485, 18846085
-
Rothberg JM, Leamon JH. The development and impact of 454 sequencing. Nat Biotechnol 2008, 26:1117-1124. 10.1038/nbt1485, 18846085.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1117-1124
-
-
Rothberg, J.M.1
Leamon, J.H.2
-
52
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu PG, Begley RF, Rothberg JM. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.T.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.I.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.G.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
53
-
-
36549020646
-
Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome
-
10.1128/JB.00690-07, 2168654, 17675389
-
Hiller NL, Janto B, Hogg JS, Boissy R, Yu S, Powell E, Keefe R, Ehrlich NE, Shen K, Hayes J, Barbadora K, Klimke W, Dernovoy D, Tatusova T, Parkhill J, Bentley SD, Post JC, Ehrlich GD, Hu FZ. Comparative genomic analyses of seventeen Streptococcus pneumoniae strains: insights into the pneumococcal supragenome. J Bacteriol 2007, 189:8186-8195. 10.1128/JB.00690-07, 2168654, 17675389.
-
(2007)
J Bacteriol
, vol.189
, pp. 8186-8195
-
-
Hiller, N.L.1
Janto, B.2
Hogg, J.S.3
Boissy, R.4
Yu, S.5
Powell, E.6
Keefe, R.7
Ehrlich, N.E.8
Shen, K.9
Hayes, J.10
Barbadora, K.11
Klimke, W.12
Dernovoy, D.13
Tatusova, T.14
Parkhill, J.15
Bentley, S.D.16
Post, J.C.17
Ehrlich, G.D.18
Hu, F.Z.19
-
54
-
-
57349139420
-
Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii
-
10.1128/JB.00834-08, 2593238, 18931120
-
Adams MD, Goglin K, Molyneaux N, Hujer KM, Lavender H, Jamison JJ, MacDonald IJ, Martin KM, Russo T, Campagnari AA, Hujer AM, Bonomo RA, Gill SR. Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. J Bacteriol 2008, 190:8053-8064. 10.1128/JB.00834-08, 2593238, 18931120.
-
(2008)
J Bacteriol
, vol.190
, pp. 8053-8064
-
-
Adams, M.D.1
Goglin, K.2
Molyneaux, N.3
Hujer, K.M.4
Lavender, H.5
Jamison, J.J.6
MacDonald, I.J.7
Martin, K.M.8
Russo, T.9
Campagnari, A.A.10
Hujer, A.M.11
Bonomo, R.A.12
Gill, S.R.13
-
55
-
-
58149086963
-
Next-generation sequencing-the promise and perils of charting the great microbial unknown
-
10.1007/s00248-008-9465-9, 19015912
-
Snyder LAS, Loman N, Pallen MJ, Penn CW. Next-generation sequencing-the promise and perils of charting the great microbial unknown. Microbial Ecology 2009, 57:1-3. 10.1007/s00248-008-9465-9, 19015912.
-
(2009)
Microbial Ecology
, vol.57
, pp. 1-3
-
-
Snyder, L.A.S.1
Loman, N.2
Pallen, M.J.3
Penn, C.W.4
-
56
-
-
33845901507
-
Microbial ecology - Human gut microbes associated with obesity
-
10.1038/4441022a, 17183309
-
Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology - Human gut microbes associated with obesity. Nature 2006, 444:1022-1023. 10.1038/4441022a, 17183309.
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
57
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
10.1038/nature07540, 2677729, 19043404
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI. A core gut microbiome in obese and lean twins. Nature 2009, 457:480-484. 10.1038/nature07540, 2677729, 19043404.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
Sogin, M.L.7
Jones, W.J.8
Roe, B.A.9
Affourtit, J.P.10
Egholm, M.11
Henrissat, B.12
Heath, A.C.13
Knight, R.14
Gordon, J.I.15
-
58
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
10.1073/pnas.0605127103, 1524930, 16880384
-
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ. Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci USA 2006, 103:12115-12120. 10.1073/pnas.0605127103, 1524930, 16880384.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
59
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
10.1126/science.1146498, 17823314
-
Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, Moran NA, Quan PL, Briese T, Hornig M, Geiser DM, Martinson V, vanEngelsdorp D, Kalkstein AL, Drysdale A, Hui J, Zhai JH, Cui LW, Hutchison SK, Simons JF, Egholm M, Pettis JS, Lipkin WI. A metagenomic survey of microbes in honey bee colony collapse disorder. Science 2007, 318:283-287. 10.1126/science.1146498, 17823314.
-
(2007)
Science
, vol.318
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.A.6
Quan, P.L.7
Briese, T.8
Hornig, M.9
Geiser, D.M.10
Martinson, V.11
vanEngelsdorp, D.12
Kalkstein, A.L.13
Drysdale, A.14
Hui, J.15
Zhai, J.H.16
Cui, L.W.17
Hutchison, S.K.18
Simons, J.F.19
Egholm, M.20
Pettis, J.S.21
Lipkin, W.I.22
more..
-
60
-
-
58349105386
-
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
-
10.1186/1471-2164-9-603, 2254599, 18190685
-
Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P. High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies. Bmc Genomics 2008, 9:11. 10.1186/1471-2164-9-603, 2254599, 18190685.
-
(2008)
Bmc Genomics
, vol.9
, pp. 11
-
-
Aury, J.M.1
Cruaud, C.2
Barbe, V.3
Rogier, O.4
Mangenot, S.5
Samson, G.6
Poulain, J.7
Anthouard, V.8
Scarpelli, C.9
Artiguenave, F.10
Wincker, P.11
-
61
-
-
47249120117
-
XDR-TB genome sequencing: a glimpse of the microbiology of the future
-
10.2217/17460913.3.2.111, 18366328
-
Loman NJ, Pallen MJ. XDR-TB genome sequencing: a glimpse of the microbiology of the future. Future Microbiol 2008, 3:111-113. 10.2217/17460913.3.2.111, 18366328.
-
(2008)
Future Microbiol
, vol.3
, pp. 111-113
-
-
Loman, N.J.1
Pallen, M.J.2
-
62
-
-
68949146008
-
Genome sequence of the emerging pathogen Helicobacter canadensis
-
10.1128/JB.00729-09, 2725615, 19542273
-
Loman NJ, Snyder LAS, Linton JD, Langdon R, Lawson AJ, Weinstock GM, Wren BW, Pallen MJ. Genome sequence of the emerging pathogen Helicobacter canadensis. J Bacteriol 2009, 191:5566-5567. 10.1128/JB.00729-09, 2725615, 19542273.
-
(2009)
J Bacteriol
, vol.191
, pp. 5566-5567
-
-
Loman, N.J.1
Snyder, L.A.S.2
Linton, J.D.3
Langdon, R.4
Lawson, A.J.5
Weinstock, G.M.6
Wren, B.W.7
Pallen, M.J.8
-
63
-
-
70349668297
-
Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing
-
10.1371/journal.ppat.1000580, 2736377, 19806175
-
Qi W, Kaser M, Roltgen K, Yeboah-Manu D, Pluschke G. Genomic diversity and evolution of Mycobacterium ulcerans revealed by next-generation sequencing. PLos Pathogens 2009, 5:e1000580. 10.1371/journal.ppat.1000580, 2736377, 19806175.
-
(2009)
PLos Pathogens
, vol.5
-
-
Qi, W.1
Kaser, M.2
Roltgen, K.3
Yeboah-Manu, D.4
Pluschke, G.5
-
64
-
-
59949090259
-
De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
-
10.1101/gr.083311.108, 2652211, 19015323
-
Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD, Dangl JL. De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. Genome Res 2009, 19:294-305. 10.1101/gr.083311.108, 2652211, 19015323.
-
(2009)
Genome Res
, vol.19
, pp. 294-305
-
-
Reinhardt, J.A.1
Baltrus, D.A.2
Nishimura, M.T.3
Jeck, W.R.4
Jones, C.D.5
Dangl, J.L.6
-
65
-
-
85074957997
-
A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528
-
10.1186/1471-2164-10-19, 2633012, 19144141
-
Studholme DJ, Ibanez SG, MacLean D, Dangl JL, Chang JH, Rathjen JP. A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528. Bmc Genomics 2009, 10:19. 10.1186/1471-2164-10-19, 2633012, 19144141.
-
(2009)
Bmc Genomics
, vol.10
, pp. 19
-
-
Studholme, D.J.1
Ibanez, S.G.2
MacLean, D.3
Dangl, J.L.4
Chang, J.H.5
Rathjen, J.P.6
-
66
-
-
50849126804
-
High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies
-
Srivatsan A, Han Y, Peng JL, Tehranchi AK, Gibbs R, Wang JD, Chen R. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet 2008, 4:14.
-
(2008)
PLoS Genet
, vol.4
, pp. 14
-
-
Srivatsan, A.1
Han, Y.2
Peng, J.L.3
Tehranchi, A.K.4
Gibbs, R.5
Wang, J.D.6
Chen, R.7
-
67
-
-
48349124258
-
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
-
10.1038/ng.195, 2652037, 18660809
-
Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, Rance R, Baker S, Maskell DJ, Wain J, Dolecek C, Achtman M, Dougan G. High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nature Genet 2008, 40:987-993. 10.1038/ng.195, 2652037, 18660809.
-
(2008)
Nature Genet
, vol.40
, pp. 987-993
-
-
Holt, K.E.1
Parkhill, J.2
Mazzoni, C.J.3
Roumagnac, P.4
Weill, F.X.5
Goodhead, I.6
Rance, R.7
Baker, S.8
Maskell, D.J.9
Wain, J.10
Dolecek, C.11
Achtman, M.12
Dougan, G.13
-
68
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. elegans
-
10.1038/nmeth.1179, 18204455
-
Hillier LW, Marth GT, Quinlan AR, Dooling D, Fewell G, Barnett D, Fox P, Glasscock JI, Hickenbotham M, Huang WC, Magrini VJ, Richt RJ, Sander SN, Stewart DA, Stromberg M, Tsung EF, Wylie T, Schedl T, Wilson RK, Mardis ER. Whole-genome sequencing and variant discovery in C. elegans. Nat Methods 2008, 5:183-188. 10.1038/nmeth.1179, 18204455.
-
(2008)
Nat Methods
, vol.5
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
Dooling, D.4
Fewell, G.5
Barnett, D.6
Fox, P.7
Glasscock, J.I.8
Hickenbotham, M.9
Huang, W.C.10
Magrini, V.J.11
Richt, R.J.12
Sander, S.N.13
Stewart, D.A.14
Stromberg, M.15
Tsung, E.F.16
Wylie, T.17
Schedl, T.18
Wilson, R.K.19
Mardis, E.R.20
more..
-
69
-
-
53249091939
-
Caenorhabditis elegans mutant allele identification by whole-genome sequencing
-
10.1038/nmeth.1249, 2574580, 18677319
-
Sarin S, Prabhu S, O'Meara MM, Pe'er I, Hobert O. Caenorhabditis elegans mutant allele identification by whole-genome sequencing. Nat Methods 2008, 5:865-867. 10.1038/nmeth.1249, 2574580, 18677319.
-
(2008)
Nat Methods
, vol.5
, pp. 865-867
-
-
Sarin, S.1
Prabhu, S.2
O'Meara, M.M.3
Pe'er, I.4
Hobert, O.5
-
70
-
-
58149200962
-
Comparing platforms for C. elegans mutant identification using high-throughput whole-genome sequencing
-
10.1371/journal.pone.0004012, 2603312, 19107202
-
Shen Y, Sarin S, Liu Y, Hobert O, Pe'er I. Comparing platforms for C. elegans mutant identification using high-throughput whole-genome sequencing. Plos one 2008, 3:e4012. 10.1371/journal.pone.0004012, 2603312, 19107202.
-
(2008)
Plos one
, vol.3
-
-
Shen, Y.1
Sarin, S.2
Liu, Y.3
Hobert, O.4
Pe'er, I.5
-
71
-
-
53549085971
-
Rapid whole-genome mutational profiling using next-generation sequencing technologies
-
10.1101/gr.077776.108, 2556265, 18775913
-
Smith DR, Quinlan AR, Peckham HE, Makowsky K, Tao W, Woolf B, Shen L, Donahue WF, Tusneem N, Stromberg MP, Stewart DA, Zhang L, Ranade SS, Warner JB, Lee CC, Coleman BE, Zhang Z, McLaughlin SF, Malek JA, Sorenson JM, Blanchard AP, Chapman J, Hillman D, Chen F, Rokhsar DS, McKernan KJ, Jeffries TW, Marth GT, Richardson PM. Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Res 2008, 18:1638-1642. 10.1101/gr.077776.108, 2556265, 18775913.
-
(2008)
Genome Res
, vol.18
, pp. 1638-1642
-
-
Smith, D.R.1
Quinlan, A.R.2
Peckham, H.E.3
Makowsky, K.4
Tao, W.5
Woolf, B.6
Shen, L.7
Donahue, W.F.8
Tusneem, N.9
Stromberg, M.P.10
Stewart, D.A.11
Zhang, L.12
Ranade, S.S.13
Warner, J.B.14
Lee, C.C.15
Coleman, B.E.16
Zhang, Z.17
McLaughlin, S.F.18
Malek, J.A.19
Sorenson, J.M.20
Blanchard, A.P.21
Chapman, J.22
Hillman, D.23
Chen, F.24
Rokhsar, D.S.25
McKernan, K.J.26
Jeffries, T.W.27
Marth, G.T.28
Richardson, P.M.29
more..
-
72
-
-
77953667078
-
Polymorphism discovery in high-throughput resequenced microarray-enriched human genomic loci
-
Antipova AA, Sokolsky TD, Clouser CR, Dimalanta ET, Hendrickson CL, Kosnopo C, Lee CC, Ranade SS, Zhang L, Blanchard AP, McKernan KJ. Polymorphism discovery in high-throughput resequenced microarray-enriched human genomic loci. Journal of Biomolecular Techniques 2009, 5:253-257.
-
(2009)
Journal of Biomolecular Techniques
, vol.5
, pp. 253-257
-
-
Antipova, A.A.1
Sokolsky, T.D.2
Clouser, C.R.3
Dimalanta, E.T.4
Hendrickson, C.L.5
Kosnopo, C.6
Lee, C.C.7
Ranade, S.S.8
Zhang, L.9
Blanchard, A.P.10
McKernan, K.J.11
-
73
-
-
77951622371
-
Breakpoint analysis of balanced chromosome rearrangements by next-generation paired-end sequencing
-
10.1038/ejhg.2009.211, 19953122
-
Chen W, Ullmann R, Langnick C, Menzel C, Wotschofsky Z, Hu H, Doring A, Hu Y, Kang H, Tzschach A, Hoeltzenbein M, Neitzel H, Markus S, Wiedersberg E, Kistner G, van Ravenswaaij-Arts CM, Kleefstra T, Kalscheuer VM, Ropers HH. Breakpoint analysis of balanced chromosome rearrangements by next-generation paired-end sequencing. European Journal of Human Genetics 2009, 18:539-543. 10.1038/ejhg.2009.211, 19953122.
-
(2009)
European Journal of Human Genetics
, vol.18
, pp. 539-543
-
-
Chen, W.1
Ullmann, R.2
Langnick, C.3
Menzel, C.4
Wotschofsky, Z.5
Hu, H.6
Doring, A.7
Hu, Y.8
Kang, H.9
Tzschach, A.10
Hoeltzenbein, M.11
Neitzel, H.12
Markus, S.13
Wiedersberg, E.14
Kistner, G.15
van Ravenswaaij-Arts, C.M.16
Kleefstra, T.17
Kalscheuer, V.M.18
Ropers, H.H.19
-
74
-
-
69749090013
-
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
-
10.1101/gr.091868.109, 2752135, 19546169
-
McKernan KJ, Peckham HE, Costa GL, McLaughlin SF, Fu YT, Tsung EF, Clouser CR, Duncan C, Ichikawa JK, Lee CC, Zhang Z, Ranade SS, Dimalanta ET, Hyland FC, Sokolsky TD, Zhang L, Sheridan A, Fu HN, Hendrickson CL, Li B, Kotler L, Stuart JR, Malek JA, Manning JM, Antipova AA, Perez DS, Moore MP, Hayashibara KC, Lyons MR, Beaudoin RE, Coleman BE, Laptewicz MW, Sannicandro AE, Rhodes MD, Gottimukkala RK, Yang S, Bafna V, Bashir A, MacBride A, Alkan C, Kidd JM, Eichler EE, Reese MG, De la Vega FM, Blanchard AP. Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding. Genome Res 2009, 19:1527-1541. 10.1101/gr.091868.109, 2752135, 19546169.
-
(2009)
Genome Res
, vol.19
, pp. 1527-1541
-
-
McKernan, K.J.1
Peckham, H.E.2
Costa, G.L.3
McLaughlin, S.F.4
Fu, Y.T.5
Tsung, E.F.6
Clouser, C.R.7
Duncan, C.8
Ichikawa, J.K.9
Lee, C.C.10
Zhang, Z.11
Ranade, S.S.12
Dimalanta, E.T.13
Hyland, F.C.14
Sokolsky, T.D.15
Zhang, L.16
Sheridan, A.17
Fu, H.N.18
Hendrickson, C.L.19
Li, B.20
Kotler, L.21
Stuart, J.R.22
Malek, J.A.23
Manning, J.M.24
Antipova, A.A.25
Perez, D.S.26
Moore, M.P.27
Hayashibara, K.C.28
Lyons, M.R.29
Beaudoin, R.E.30
Coleman, B.E.31
Laptewicz, M.W.32
Sannicandro, A.E.33
Rhodes, M.D.34
Gottimukkala, R.K.35
Yang, S.36
Bafna, V.37
Bashir, A.38
MacBride, A.39
Alkan, C.40
Kidd, J.M.41
Eichler, E.E.42
Reese, M.G.43
De la Vega, F.M.44
Blanchard, A.P.45
more..
-
75
-
-
41549115091
-
The complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse
-
10.1128/JB.01695-07, 2293198, 18245285
-
Durfee T, Nelson R, Baldwin S, Plunkett G, Burland V, Mau B, Petrosino JF, Qin X, Muzny DM, Ayele M, Gibbs RA, Csorgo B, Posfai G, Weinstock GM, Blattner FR. The complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse. J Bacteriol 2008, 190:2597-2606. 10.1128/JB.01695-07, 2293198, 18245285.
-
(2008)
J Bacteriol
, vol.190
, pp. 2597-2606
-
-
Durfee, T.1
Nelson, R.2
Baldwin, S.3
Plunkett, G.4
Burland, V.5
Mau, B.6
Petrosino, J.F.7
Qin, X.8
Muzny, D.M.9
Ayele, M.10
Gibbs, R.A.11
Csorgo, B.12
Posfai, G.13
Weinstock, G.M.14
Blattner, F.R.15
-
76
-
-
70649091127
-
Whole-genome typing of Bacillus anthracis isolates by next-generation sequencing accurately and rapidly identifies strain-specific diagnostic polymorphisms
-
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska PM, Williamson P, Beaudry JA, Matthews M, Schupp JM, Wagner DM, Furtado MR, Kiem P, Budowle B. Whole-genome typing of Bacillus anthracis isolates by next-generation sequencing accurately and rapidly identifies strain-specific diagnostic polymorphisms. Forensic Science International: Genetics Supplement Series 2009, 300:-301.
-
(2009)
Forensic Science International: Genetics Supplement Series
, vol.300
, pp. 301
-
-
Cummings, C.A.1
Bormann Chung, C.A.2
Fang, R.3
Barker, M.4
Brzoska, P.M.5
Williamson, P.6
Beaudry, J.A.7
Matthews, M.8
Schupp, J.M.9
Wagner, D.M.10
Furtado, M.R.11
Kiem, P.12
Budowle, B.13
-
77
-
-
0028097695
-
Role of iron, capsule, and toxins in the pathogenicity of Vibrio vulnificus biotype 2 for mice
-
186176, 8300241
-
Amaro C, Biosca EG, Fouz B, Toranzo AE, Garay E. Role of iron, capsule, and toxins in the pathogenicity of Vibrio vulnificus biotype 2 for mice. Infect Immun 1994, 62:759-763. 186176, 8300241.
-
(1994)
Infect Immun
, vol.62
, pp. 759-763
-
-
Amaro, C.1
Biosca, E.G.2
Fouz, B.3
Toranzo, A.E.4
Garay, E.5
-
78
-
-
0029882799
-
Vibrio vulnificus biotype 2, pathogenic for eels, is also an opportunistic pathogen for humans
-
167917, 8919812
-
Amaro C, Biosca EG. Vibrio vulnificus biotype 2, pathogenic for eels, is also an opportunistic pathogen for humans. Appl Environ Microbiol 1996, 62:1454-1457. 167917, 8919812.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1454-1457
-
-
Amaro, C.1
Biosca, E.G.2
-
79
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
10.1038/35020000, 10952301
-
Heidelberg JF, Eisen JA, Nelson WC, Clayton RA, Gwinn ML, Dodson RJ, Haft DH, Hickey EK, Peterson JD, Umayam L, Gill SR, Nelson KE, Read TD, Tettelin H, Richardson D, Ermolaeva MD, Vamathevan J, Bass S, Qin H, Dragoi I, Sellers P, McDonald L, Utterback T, Fleishmann RD, Nierman WC, White O. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 2000, 406:477-483. 10.1038/35020000, 10952301.
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.10
Gill, S.R.11
Nelson, K.E.12
Read, T.D.13
Tettelin, H.14
Richardson, D.15
Ermolaeva, M.D.16
Vamathevan, J.17
Bass, S.18
Qin, H.19
Dragoi, I.20
Sellers, P.21
McDonald, L.22
Utterback, T.23
Fleishmann, R.D.24
Nierman, W.C.25
White, O.26
more..
-
80
-
-
70349304423
-
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
-
10.1073/pnas.0907787106, 2741270, 19720995
-
Chun J, Grim CJ, Hasan NA, Lee JH, Choi SY, Haley BJ, Taviani E, Jeon YS, Kim DW, Lee JH, Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Munk AC, Chertkov O, Meincke L, Saunders E, Walters RA, Huq A, Nair GB, Colwell RR. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proc Natl Acad Sci USA 2009, 106:15442-15447. 10.1073/pnas.0907787106, 2741270, 19720995.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 15442-15447
-
-
Chun, J.1
Grim, C.J.2
Hasan, N.A.3
Lee, J.H.4
Choi, S.Y.5
Haley, B.J.6
Taviani, E.7
Jeon, Y.S.8
Kim, D.W.9
Lee, J.H.10
Brettin, T.S.11
Bruce, D.C.12
Challacombe, J.F.13
Detter, J.C.14
Han, C.S.15
Munk, A.C.16
Chertkov, O.17
Meincke, L.18
Saunders, E.19
Walters, R.A.20
Huq, A.21
Nair, G.B.22
Colwell, R.R.23
more..
-
81
-
-
33748745026
-
The Pathway Tools cellular overview diagram and Omics Viewer
-
10.1093/nar/gkl334, 1557788, 16893960
-
Paley SM, Karp PD. The Pathway Tools cellular overview diagram and Omics Viewer. Nucleic Acids Res 2006, 34:3771-3778. 10.1093/nar/gkl334, 1557788, 16893960.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3771-3778
-
-
Paley, S.M.1
Karp, P.D.2
-
82
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
10.1093/nar/gki866, 1251668, 16214803
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, Crecy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Ruckert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005, 33:5691-5702. 10.1093/nar/gki866, 1251668, 16214803.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
Cohoon, M.6
Crecy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
Linke, B.23
McHardy, A.C.24
Meyer, F.25
Neuweger, H.26
Olsen, G.27
Olson, R.28
Osterman, A.29
Portnoy, V.30
Pusch, G.D.31
Rodionov, D.A.32
Ruckert, C.33
Steiner, J.34
Stevens, R.35
Thiele, I.36
Vassieva, O.37
Ye, Y.38
Zagnitko, O.39
Vonstein, V.40
more..
-
83
-
-
77954700417
-
Genetic characterization of Vibrio vulnificus strains from tilapia aquaculture in Bangladesh
-
10.1128/AEM.00636-10, 20495047
-
Mahmud ZH, Wright AC, Mandal SC, Dai J, Jones MK, Hasan M, Rashid MH, Islam MS, Johnson JA, Gulig PA, Morris JG, Ali A. Genetic characterization of Vibrio vulnificus strains from tilapia aquaculture in Bangladesh. Appl Environ Microbiol 2010, 76:4890-4895. 10.1128/AEM.00636-10, 20495047.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4890-4895
-
-
Mahmud, Z.H.1
Wright, A.C.2
Mandal, S.C.3
Dai, J.4
Jones, M.K.5
Hasan, M.6
Rashid, M.H.7
Islam, M.S.8
Johnson, J.A.9
Gulig, P.A.10
Morris, J.G.11
Ali, A.12
-
84
-
-
33846415810
-
A real-time PCR assay for the rapid determination of 16 S rRNA genotype in Vibrio vulnificus
-
10.1016/j.mimet.2006.02.018, 17070612
-
Vickery MC, Nilsson WB, Strom MS, Nordstrom JL, DePaola A. A real-time PCR assay for the rapid determination of 16 S rRNA genotype in Vibrio vulnificus. J Microbiol Methods 2007, 68:376-384. 10.1016/j.mimet.2006.02.018, 17070612.
-
(2007)
J Microbiol Methods
, vol.68
, pp. 376-384
-
-
Vickery, M.C.1
Nilsson, W.B.2
Strom, M.S.3
Nordstrom, J.L.4
DePaola, A.5
|