A bicarbonate cofactor modulates 1,4-dihydroxy-2-naphthoyl-coenzyme a synthase in menaquinone biosynthesis of Escherichia coli

Journal of Biological Chemistry

Volumn 285, Issue 39, 2010, Pages 30159-30169

  Jiang, Ming ^a   Chen, Minjiao ^a   Guo, Zu Feng ^a   Guo, Zhihong ^a  

^a HONG KONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BIOCHEMISTRY; BIOSYNTHESIS; CATALYST ACTIVITY; CRYSTAL STRUCTURE; ENZYME ACTIVITY; ESCHERICHIA COLI; METAL IONS; PLANTS (BOTANY);

ANIONIC COMPLEX; ASPARTATES; BICARBONATE ANIONS; BIOSYNTHETIC PATHWAY; CATALYTIC BASE; CATALYTIC MECHANISMS; CATALYTIC ROLE; COENZYME A; COFACTORS; CONCENTRATION-DEPENDENT; ENZYMATIC REACTION; KINETIC PROPERTIES; ORTHOLOGS; POLYATOMICS; SALMONELLA TYPHIMURIUM; SEQUENCE IDENTITY; SMALL ORGANIC MOLECULES; SYNTHASES; THIOESTERS; TYPE II;

ENZYMES;

1,4 DIHYDROXY 2 NAPHTHOYL COENZYME A SYNTHASE; BACTERIAL PROTEIN; BICARBONATE; MENAQUINONE; UNCLASSIFIED DRUG; COENZYME; FARNOQUINONE; LYASE;

ARTICLE; BINDING SITE; BIOSYNTHESIS; CATALYSIS; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; CONTROLLED STUDY; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME KINETICS; ESCHERICHIA COLI; GENE OVEREXPRESSION; HYDROLYSIS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROCESSING; SEQUENCE ALIGNMENT; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS; CHEMISTRY; CLASSIFICATION; COENZYME; ENZYMOLOGY; GENETICS; KINETICS; METABOLISM; MOLECULAR EVOLUTION; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM; STRUCTURAL HOMOLOGY;

ESCHERICHIA COLI; SALMONELLA TYPHIMURIUM;

BICARBONATES; BINDING SITES; CATALYSIS; COENZYMES; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; KINETICS; MUTAGENESIS, SITE-DIRECTED; OXO-ACID-LYASES; SALMONELLA TYPHIMURIUM; STRUCTURAL HOMOLOGY, PROTEIN; VITAMIN K 2;

EID: 77956905385     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.147702     Document Type: Article

References (58)

1. Meganathan, R. (1996) in Escherichia coli and Salmonella: Cellular and Molecular Biology (Neidhardt, F. C., Curtiss, R., 3rd, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M., and Umbarger, H. E., eds) 2nd Ed., Vol. 1, pp 642-656, American Society for Microbiology, Washington, DC
2. Meganathan, R. (2001) Vitam. Horm. 61, 173-218
3. Berkner, K. L. (2005) Annu. Rev. Nutr. 25, 127-149
4. Dowd, P., Ham, S. W., Naganathan, S., and Hershline, R. (1995) Annu. Rev. Nutr. 15, 419-440
5. Bugel, S. (2008) Vitamin K, pp 393-416, Elsevier Academic Press Inc, San Diego
6. Shanahan, C. M., Proudfoot, D., Farzaneh-Far, A., and Weissberg, P. L. (1998) Crit. Rev. Eukaryot. Gene Expr. 8, 357-375
7. Bentley, R. (1990) Crit. Rev. Biochem. Mol. Biol. 25, 307-384
8. Dosselaere, F., and Vanderleyden, J. (2001) Crit. Rev. Microbiol. 27, 75-131
9. Fernandez, F., Collins, M. D., and Hill, M. J. (1985) Biochem. Soc. Trans. 13, 223-224
10. Suttie, J. W. (1995) Annu. Rev. Nutr. 15, 399-417
11. Kurosu, M., Narayanasamy, P., Biswas, K., Dhiman, R., and Crick, D. C. (2007) J. Med. Chem. 50, 3973-3975
12. Lu, X., Zhang, H., Tonge, P. J., and Tan, D. S. (2008) Bioorg. Med. Chem. Lett. 18, 5963-5966
13. Wissenbach, U., Kröger, A., and Unden, G. (1990) Arch. Microbiol. 154, 60-66
14. Wissenbach, U., Ternes, D., and Unden, G. (1992) Arch. Microbiol. 158, 68-73
15. Polglase, W. J., Pun, W. T., and Withaar, J. (1966) Biochim. Biophys. Acta 118, 425-426
16. Jones, R. W., and Garland, P. B. (1982) Function of Quinones in Energy Conserving Systems (Trumpover, B. C., ed) pp. 465-476, Academic Press, New York
17. Bekker, M., Kramer, G., Hartog, A. F., Wagner, M. J., de Koster, C. G., Hellingwerf, K. J., and Teixeira de Mattos, M. J. (2007) Microbiology 153, 1974-1980
18. Unden, G. (1988) Arch. Microbiol. 150, 499-503
19. Shestopalov, A. I., Bogachev, A. V., Murtazina, R. A., Viryasov, M. B., and Skulachev, V. P. (1997) FEBS Lett. 404, 272-274
20. Jiang, M., Cao, Y., Guo, Z. F., Chen, M., Chen, X., and Guo, Z. (2007) Biochemistry 46, 10979-10989
21. Jiang, M., Chen, M., Cao, Y., Yang, Y., Sze, K. H., Chen, X., and Guo, Z. (2007) Org. Lett. 9, 4765-4767
22. Jiang, M., Chen, X., Guo, Z. F., Cao, Y., Chen, M., and Guo, Z. (2008) Biochemistry 47, 3426-3434
23. Jiang, M., Chen, X., Wu, X. H., Chen, M., Wu, Y. D., and Guo, Z. (2009) Biochemistry 48, 6921-6931
24. Glasner, M. E., Fayazmanesh, N., Chiang, R. A., Sakai, A., Jacobson, M. P., Gerlt, J. A., and Babbitt, P. C. (2006) J. Mol. Biol. 360, 228-250
25. Lefebvre-Legendre, L., Rappaport, F., Finazzi, G., Ceol, M., Grivet, C., Hopfgartner, G., and Rochaix, J. D. (2007) J. Biol. Chem. 282, 13250-13263
26. Gross, J., Meurer, J., and Bhattacharya, D. (2008) BMC Evol. Biol. 8, 117
27. Garcion, C., Lohmann, A., Lamodière, E., Catinot, J., Buchala, A., Doermann, P., and Métraux, J. P. (2008) Plant Physiol. 147, 1279-1287
28. Widhalm, J. R., van Oostende, C., Furt, F., and Basset, G. J. C. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 5599-5603
29. Hiratsuka, T., Furihata, K., Ishikawa, J., Yamashita, H., Itoh, N., Seto, H., and Dairi, T. (2008) Science 321, 1670-1673
30. Seto, H., Jinnai, Y., Hiratsuka, T., Fukawa, M., Furihata, K., Itoh, N., and Dairi, T. (2008) J. Am. Chem. Soc. 130, 5614-5615
31. Truglio, J. J., Theis, K., Feng, Y., Gajda, R., Machutta, C., Tonge, P. J., and Kisker, C. (2003) J. Biol. Chem. 278, 42352-42360
32. Johnston, J. M., Arcus, V. L., and Baker, E. N. (2005) Acta Crystallogr. D Biol. Crystallogr. 61, 1199-1206
33. Ulaganathan, V., Agacan, M. F., Buetow, L., Tulloch, L. B., and Hunter, W. N. (2007) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 63, 908-913
34. D'Ordine, R. L., Bahnson, B. J., Tonge, P. J., and Anderson, V. E. (1994) Biochemistry 33, 14733-14742
35. Müller-Newen, G., Janssen, U., and Stoffel, W. (1995) Eur. J. Biochem. 228, 68-73
36. Engel, C. K., Mathieu, M., Zeelen, J. P., Hiltunen, J. K., and Wierenga, R. K. (1996) EMBO J. 15, 5135-5145
37. Engel, C. K., Kiema, T. R., Hiltunen, J. K., and Wierenga, R. K. (1998) J. Mol. Biol. 275, 847-859
38. Modis, Y., Filppula, S. A., Novikov, D. K., Norledge, B., Hiltunen, J. K., and Wierenga, R. K. (1998) Structure 6, 957-970
39. Kiema, T. R., Engel, C. K., Schmitz, W., Filppula, S. A., Wierenga, R. K., and Hiltunen, J. K. (1999) Biochemistry 38, 2991-2999
40. Mursula, A. M., van Aalten, D. M., Hiltunen, J. K., and Wierenga, R. K. (2001) J. Mol. Biol. 309, 845-853
41. DeLano, W. L. (2002) The PyMOL Molecular Graphics System, DeLano Scientific LLC, San Carlos, CA
42. Arnold, K., Bordoli, L., Kopp, J., and Schwede, T. (2006) Bioinformatics 22, 195-201
43. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
44. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., and Higgins, D. G. (2007) Bioinformatics 23, 2947-2978
45. Shevela, D., Klimov, V., and Messinger, J. (2007) Photosynth. Res. 94, 247-264
46. Loll, B., Kern, J., Saenger, W., Zouni, A., and Biesiadka, J. (2005) Nature 438, 1040-1044
47. Shevela, D., Su, J. H., Klimov, V., and Messinger, J. (2008) Biochim. Biophys. Acta 1777, 532-539
48. Ulas, G., Olack, G., and Brudvig, G. W. (2008) Biochemistry 47, 3073-3075
49. Chen, Y., Cann, M. J., Litvin, T. N., Iourgenko, V., Sinclair, M. L., Levin, L. R., and Buck, J. (2000) Science 289, 625-628
50. Steegborn, C., Litvin, T. N., Levin, L. R., Buck, J., and Wu, H. (2005) Nat. Struct. Mol. Biol. 12, 32-37
51. Sun, L., Wang, H., Hu, J., Han, J., Matsunami, H., and Luo, M. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 2041-2046
52. Hernandez-Guillamon, M., Bolea, I., Solé, M., Boada, M., Tipton, K. F., and Unzeta, M. (2007) J. Biochem. 142, 571-576
53. Sträter, N., Sun, L., Kantrowitz, E. R., and Lipscomb, W. N. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 11151-11155
54. Cronk, J. D., Rowlett, R. S., Zhang, K. Y., Tu, C., Endrizzi, J. A., Lee, J., Gareiss, P. C., and Preiss, J. R. (2006) Biochemistry 45, 4351-4361
55. Repaske, R., and Clayton, M. A. (1978) J. Bacteriol. 135, 1162-1164
56. Watsuji, T. O., Kato, T., Ueda, K., and Beppu, T. (2006) Biosci. Biotechnol. Biochem. 70, 753-756
57. Holden, H. M., Benning, M. M., Haller, T., and Gerlt, J. A. (2001) Acc. Chem. Res. 34, 145-157
58. Igbavboa, U., and Leistner, E. (1990) Eur. J. Biochem. 192, 441-449