New generation of loxP-mutated deletion cassettes for the genetic manipulation of yeast natural isolates

Yeast

Volumn 27, Issue 9, 2010, Pages 765-775

  Carter, Zorana ^a   Delneri, Daniela ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

Hetherothallism; Karyotypic diversity; Mutated loxP sites; Yeast hybrids

Indexed keywords

CRE RECOMBINASE; PHLEOMYCIN;

ARTICLE; AUXOTROPHIC MUTANT; CHROMOSOME REARRANGEMENT; DELETION MUTANT; FUNGAL GENE; FUNGAL STRAIN; GENE CASSETTE; GENE DISRUPTION; GENE SEQUENCE; GENE VECTOR; GENETIC MANIPULATION; GENETIC RECOMBINATION; LOXP SITE; MARKER GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION;

DNA, FUNGAL; GENE KNOCKOUT TECHNIQUES; GENETIC VECTORS; GENETICS, MICROBIAL; INTEGRASES; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MYCOLOGY; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION;

EID: 77956803854     PISSN: 0749503X     EISSN: 10970061     Source Type: Journal    
DOI: 10.1002/yea.1774     Document Type: Article

References (34)

1. Akada R, Kitagawa T, Kaneko S, et al. 2006. PCR-mediated seamless gene deletion and marker recycling in Saccharomyces cerevisiae. Yeast 23: 399-405.
2. Arakawa H, Lodygin D, Buerstedde JM. 2001. Mutant loxP vectors for selectable marker recycle and conditional knockouts. BMC Biotechnol 1: 7.
3. Araki K, Imaizumi T, Okuyama K, et al. 1997. Efficiency of recombination by Cre transient expression in embryonic stem cells: Comparison of various promoters. J Biochem 122: 977-982.
4. Baganz F, Hayes A, Marren D, et al. 1997. Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae. Yeast 13: 1563-1573.
5. Belloch C, Orlic S, Barrio E, Querol A. 2008. Fermentative stress adaptation of hybrids within the Saccharomyces sensu stricto complex. Int J Food Microbiol 122: 188-195.
6. Colson I, Delneri D, Oliver SG. 2004. Effects of reciprocal chromosomal translocations on the fitness of Saccharomyces cerevisiae. EMBO Rep 5: 392-398.
7. Delneri D, Tomlin GC, Wixon JL, et al. 2000. Exploring redundancy in the yeast genome: An improved strategy for use of the cre-loxP system. Gene 252: 127-135.
8. Delneri D, Colson I, Grammenoudi S, et al. 2003. Engineering evolution to study speciation in yeasts. Nature 422: 68-72.
9. Fay JC, McCullough HL, Sniegowski PD, Eisen MB. 2004. Population genetic variation in gene expression is associated with phenotypic variation in Saccharomyces cerevisiae. Genome Biol 5: R26.
10. Fischer G, James SA, Roberts IN, et al. 2000. Chromosomal evolution in Saccharomyces. Nature 405: 451-454.
11. Gietz RD, Woods RA. 2002. Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method. Methods Enzymol 350: 87-96.
12. Goffeau A, Barrell BG, Bussey H, et al. 1996. Life with 6000 genes. Science 274: 563-1547
13. Goldstein AL, Pan X, McCusker JH. 1999. Heterologous URA3MX cassettes for gene replacement in Saccharomyces cerevisiae. Yeast 15: 507-511.
14. Goldstein AL, McCusker JH. 1999. Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15: 1541-1553.
15. Gonzalez SS, Barrio E, Gafner J, Querol A. 2006. Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations. FEMS Yeast Res 6: 1221-1234.
16. Greig D, Louis EJ, Borts RH, Travisano M. 2002. Hybrid speciation in experimental populations of yeast. Science 298: 1773-1775.
17. Gueldener U, Heinisch J, Koehler GJ, et al. 2002. A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast. Nucleic Acids Res 30: E23.
18. Güldener U, Heck S, Fielder T, et al. 1996. A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res 24: 2519-2524.
19. Janke C, Magiera MM, Rathfelder N, et al. 2004. A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes. Yeast 21: 947-962.
20. Kondo S, Okuda A, Sato H, et al. 2003. Simultaneous on/off regulation of transgenes located on a mammalian chromosome with Cre-expressing adenovirus and a mutant loxP. Nucleic Acids Res 31: E76.
21. Langer SJ, Ghafoori AP, Byrd M, Leinwand L. 2002. A genetic screen identifies novel non-compatible loxP sites. Nucleic Acids Res 30: 3067-3077.
22. Lee G, Saito I. 1998. Role of nucleotide sequences of loxP spacer region in Cre-mediated recombination. Gene 216: 55-65.
23. Liti G, Peruffo A, James SA, et al. 2005. Inferences of evolutionary relationships from a population survey of LTRretrotransposons and telomeric-associated sequences in the Saccharomyces sensu stricto complex. Yeast 22: 177-192.
24. Liti G, Barton DB, Louis EJ. 2006. Sequence diversity, reproductive isolation and species concepts in Saccharomyces. Genetics 174: 839-850.
25. Lopandic K, Gangl H, Wallner E, et al. 2007. Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii FEMS Yeast Res 7: 953-965.
26. Maclean CJ, Greig D. 2008. Prezygotic reproductive isolation between Saccharomyces cerevisiae and Saccharomyces paradoxus. BMC Evol Biol 8: 1.
27. Missirlis PI, Smailus DE, Holt RA. 2006. A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination. BMC Genom 7: 73.
28. Murphy HA, Kuehne HA, Francis CA, Sniegowski PD. 2006. Mate choice assays and mating propensity differences in natural yeast populations. Biol Lett 2: 553-556.
29. Sambrook JFE, Maniatis T. 1989. Molecular Cloning: A laboratory Manual. Cold Spring Harbour Laboratory Press: Cold Spring Harbour, NY.
30. Storici F, Resnick MA. 2006. The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast. Methods Enzymol 409: 329-345.
31. Wach A, Brachat A, Pohlmann R, Philippsen P. 1994. New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae. Yeast 10: 1793-1808.
32. Winzeler EA, Shoemaker DD, Astromoff A, et al. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285: 901-906.
33. Zhang Z, Lutz B. 2002. Cre recombinase-mediated inversion using lox66 and lox71 : Method to introduce conditional point mutations into the CREB-binding protein. Nucleic Acids Res 30: E90.
34. Zhang N, Osborn M, Gitsham P, et al. 2003. Using yeast to place human genes in functional categories. Gene 303: 121-129.