Using yeast to place human genes in functional categories

Gene

Volumn 303, Issue 1-2, 2003, Pages 121-129

  Zhang, Nianshu ^a   Osborn, Michael ^b   Gitsham, Paul ^a   Yen, Kuangyu ^a   Miller, J Ross ^b   Oliver, Stephen G ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b BABRAHAM INSTITUTE   (United Kingdom)

Author keywords

Functional complementation; Functional genomics; Homo sapiens; Saccharomyces cerevisiae; Yeast expression vector

Indexed keywords

COMPLEMENTARY DNA; DOXYCYCLINE; METHIONINE; SIGNAL PEPTIDASE; UBIQUITIN CONJUGATING ENZYME;

ARTICLE; BIOLOGICAL MODEL; CELL GROWTH; CODING; CONTROLLED STUDY; CULTURE MEDIUM; DNA ISOLATION; DNA LIBRARY; ENZYME ANALYSIS; EUKARYOTE; FUNGAL GENE; GENE CONTROL; GENE EXPRESSION; GENE FUNCTION; GENE SWITCHING; GENETIC ANALYSIS; MAMMALIAN GENETICS; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; SACCHAROMYCES CEREVISIAE; VALIDATION PROCESS; YEAST; YEAST CELL;

EUKARYOTA; HOMO SAPIENS; MAMMALIA; SACCHAROMYCES CEREVISIAE;

EID: 0037448606     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(02)01142-3     Document Type: Article

References (31)

1. Adams A., Gottschling D.E., Kaiser C.A., Stearns T. Techniques and Protocols. Techniques and Protocols. #3:1997.
2. Belli G., Gari E., Aldea M., Herrero E. Functional analysis of yeast essential genes using a promoter substitution cassette and the tetracycline-regulatable dual expression system. Yeast. 14:1998;1127-1138.
3. Benton B.K., Plump S.D., Roos J., Lennarz W.J., Cross F.R. Over-expression of S. cerevisiae G1 cyclins restores the viability of alg1 N-glycosylation mutants. Curr. Genet. 29:1996;106-113.
4. Burke D., Gasdaska P., Hartwell L. Dominant effects of tubulin overexpression in Saccharomyces cerevisiae. Mol. Cell. Biol. 9:1989;1049-1059.
5. Church D.M., Buckler A.J. Gene identification by exon amplification. Methods Enzymol. 303:1999;83-99.
6. Claverie J.M. Computational methods for exon detection. Mol. Biotechnol. 10:1998;27-48.
7. Delneri D., Brancia F.L., Oliver S.G. Towards a truly integrative biology through the functional genomics of yeast. Curr. Opin. Biotechnol. 12:2001;87-91.
8. Foury F. Human genetic diseases: A cross-talk between man and yeast. Gene. 195:1997;1-10.
9. Gari E., Piedrafita L., Aldea M., Herrero E. A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast. 13:1997;837-848.
10. Goffeau A., Barrell B.G., Bussey H., Davis R.W., Dujon B., Feldmann H., Galibert F., Hoheisel J.D., Jacq C., Johnston M., Louie E.J., Mewes H.W., Murakami Y., Philippsen P., Tettelin H., Oliver S.G. Life with 6000 genes. Science. 274:1996;546-567.
11. Hofmann K., Bucher P. The PCI domain: a common theme in three multiprotein complexes. Trends Biochem. Sci. 23:1998;204-205.
12. Keon J., Bailey A., Hargreaves J. A group of expressed cDNA sequences from the wheat fungal leaf blotch pathogen, Mycosphaerella graminicola (Septoria tritici). Fungal Genet. Biol. 29:2000;118-133.
13. Lander E.S., Linton L.M., Birren B., Nusbaum C., Zody M.C., Baldwin J., Devon K., Dewar K., Doyle M., FitzHugh W., et al. Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
14. Latge J.P. The pathobiology of Aspergillus fumigatus. Trends Microbiol. 9:2001;382-389.
15. Lee M.G., Nurse P. Complementation used to clone a human homologue of the fission yeast-cell cycle control gene CDC2. Nature. 327:1987;31-35.
16. Magdolen V., Drubin D.G., Mages G., Bandlow W. High levels of profilin suppress the lethality caused by overproduction of actin in yeast cells. FEBS Lett. 316:1993;41-47.
17. Maniatis T., Fritsch E., Sambrook J. Plasmid vectors. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. Mountain H.A., Bystrom A.S., Larsen J.T., Korch C. Four major transcriptional responses in the methionine/threonine biosynthetic pathway of Saccharomyces cerevisiae. Yeast. 7:1991;781-803.
19. Munnich A., Rustin P. Clinical spectrum and diagnosis of mitochondrial disorders. Am. J. Med. Genet. 106:2001;4-17.
20. Nakai K. Review: prediction of in vivo fates of proteins in the era of genomics and proteomics. J. Struct. Biol. 134:2001;103-116.
21. Oliver S.G., van der Aart Q.J., Agostoni-Carbone M.L., Aigle M., Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P., Benit P., et al. The complete DNA sequence of yeast chromosome III. Nature. 357:1992;38-46.
22. Ouspenski I.I., Elledge S.J., Brinkley B.R. New yeast genes important for chromosome integrity and segregation identified by dosage effects on genome stability. Nucleic Acids Res. 27:1999;3001-3008.
23. Ouzounis C., Sander C. Homology of the NifS family of proteins to a new class of pyridoxal phosphate-dependent enzymes. FEBS Lett. 322:1993;159-164.
24. Rang A., Will H. The tetracycline-responsive promoter contains functional interferon- inducible response elements. Nucleic Acids Res. 28:2000;1120-1125.
25. Siderovski D.P., Hessel A., Chung S., Mak T.W., Tyers M. A new family of regulators of G-protein-coupled receptors? Curr. Biol. 6:1996;211-212.
26. Sikorski R.S., Hieter P. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics. 122:1989;19-27.
27. Velours J., Vaillier J., Paumard P., Soubannier V., Lai-Zhang J., Mueller D.M. Bovine coupling factor 6, with just 14.5% shared identity, replaces subunit h in the yeast ATP synthase. J. Biol. Chem. 276:2001;8602-8607.
28. Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., Sutton G.G., Smith H.O., Yandell M., Evans C.A., Holt R.A., et al. The sequence of the human genome. Science. 291:2001;1304-1351.
29. Xiao W., Fontanie T. Expression of the human MGMT O6-methylguanine DNA methyltransferase gene in a yeast alkylation-sensitive mutant: its effects on both exogenous and endogenous DNA alkylation damage. Mutat. Res. 336:1995;133-142.
30. Zeviani M., Corona P., Nijtmans L., Tiranti V. Nuclear gene defects in mitochondrial disorders. Ital. J. Neurol. Sci. 20:1999;401-408.
31. Zhang N., Gardner D.C.J., Oliver S.G., Stateva L.I. Genetically controlled cell lysis in the yeast Saccharomyces cerevisiae. Biotechnol. Bioeng. 64:1999;607-615.