Pseudoalteromonas lipolytica sp. nov., isolated from the Yangtze River estuary

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 9, 2010, Pages 2176-2181

  Xu, Xue Wei ^a   Wu, Yue Hong ^a   Wang, Chun Sheng ^a   Gao, Xiao Hui ^a   Wang, Xiao Gu ^a   Wu, Min ^b  

^a Ministry of Natural Resources of the People's Republic of China   (China)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACITRACIN; CARBENICILLIN; CASEIN; CEFOTAXIME; CHLORAMPHENICOL; ERYTHROMYCIN; FATTY ACID; GELATIN; GENTAMICIN; KANAMYCIN; NEOMYCIN; NITROFURANTOIN; NOVOBIOCIN; NYSTATIN; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; POLYMYXIN B; RIFAMYCIN; RIVER WATER; RNA 16S; TETRACYCLINE; TOBRAMYCIN; UBIQUINONE; BACTERIAL DNA; RIBOSOME DNA; SEA WATER;

ANTIBIOTIC RESISTANCE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CHEMOTAXONOMY; GENE SEQUENCE; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOALTEROMONAS; PSEUDOALTEROMONAS LIPOLYTICA; REVIEW; CHINA; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS;

CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PSEUDOALTEROMONAS; RNA, RIBOSOMAL, 16S; SEAWATER;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PSEUDOALTEROMONAS; PSEUDOALTEROMONAS BYUNSANENSIS; PSEUDOALTEROMONAS UNDINA;

EID: 77956686599     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.017673-0     Document Type: Review

References (45)

1. Al Khudary, R., Stößer, N. I., Qoura, F. & Antranikian, G. (2008). Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen. Int J Syst Evol Microbiol 58, 2018-2024.
2. Bowman, J. P. (1998). Pseudoalteromonas prydzensis sp. nov., a psychrotrophic, halotolerant bacterium from Antarctic sea ice. Int J Syst Bacteriol 48, 1037-1041.
3. Bowman, J. P. (2007). Bioactive compound synthetic capacity and ecological significance of marine bacterial genus Pseudoalteromonas. Mar Drugs 5, 220-241.
4. VP. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2B, pp. 467-478. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
5. Bozal, N., Tudela, E., Rosselló-Mora, R., Lalucat, J. & Guinea, J. (1997). Pseudoalteromonas antarctica sp. nov., isolated from an Antarctic coastal environment. Int J Syst Bacteriol 47, 345-351.
6. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
7. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
8. Dong, X.-Z. & Cai, M.-Y. (2001). Determination of biochemical properties. In Manual for the Systematic Identification of General Bacteria, pp. 370-398. Edited by X.-Z. Dong & M.-Y. Cai. Beijing: Science Press (in Chinese).
9. Egan, S., Holmström, C. & Kjelleberg, S. (2001). Pseudoalteromonas ulvae sp. nov., a bacterium with antifouling activities isolated from the surface of a marine alga. Int J Syst Evol Microbiol 51, 1499-1504.
10. Euzé by, J. P. (1997). List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet. Int J Syst Bacteriol 47, 590-592. http://www.bacterio.cict.fr
11. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
12. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
13. Gauthier, G., Gauthier, M. & Christen, R. (1995). Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45, 755-761.
14. Holmström, C., James, S., Neilan, B. A., White, D. C. & Kjelleberg, S. (1998). Pseudoalteromonas tunicata sp. nov., a bacterium that produces antifouling agents. Int J Syst Bacteriol 48, 1205-1212.
15. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
16. Isnansetyo, A. & Kamei, Y. (2003). Pseudoalteromonas phenolica sp. nov., a novel marine bacterium that produces phenolic antimethicillin-resistant Staphylococcus aureus substances. Int J Syst Evol Microbiol 53, 583-588.
17. Ivanova, E. P., Kiprianova, E. A., Mikhailov, V. V., Levanova, G. F., Garagulya, A. D., Gorshkova, N. M., Yumoto, N. & Yoshikawa, S. (1996). Characterization and identification of marine Alteromonas nigrifaciens strains and emendation of the description. Int J Syst Bacteriol 46, 223-228.
18. Ivanova, E. P., Kiprianova, E. A., Mikhailov, V. V., Levanova, G. F., Garagulya, A. D., Gorshkova, N. M., Vysotskii, M. V., Nicolau, D. V., Yumoto, N. & other authors (1998). Phenotypic diversity of Pseudoalteromonas citrea from different marine habitats and emendation of the description. Int J Syst Bacteriol 48, 247-256.
19. Ivanova, E. P., Chun, J., Romanenko, L. A., Matte, M. E., Mikhailov, V. V., Frolova, G. M., Huq, A. & Colwell, R. R. (2000). Reclassification of Alteromonas distincta Romanenko et al. 1995 as Pseudoalteromonas distincta comb. nov. Int J Syst Evol Microbiol 50, 141-144.
20. Ivanova, E. P., Romanenko, L. A., Matté, M. H., Matté, G. R., Lysenko, A. M., Simidu, U., Kita-Tsukamoto, K., Sawabe, T., Vysotskii, M. V. & other authors (2001). Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov. and emendation of description. Int J Syst Evol Microbiol 51, 1071-1078.
21. Ivanova, E. P., Sawabe, T., Alexeeva, Y. V., Lysenko, A. M., Gorshkova, N. M., Hayashi, K., Zukova, N. V., Christen, R. & Mikhailov, V. V. (2002a). Pseudoalteromonas issachenkonii sp. nov., a bacterium that degrades the thallus of the brown alga Fucus evanescens. Int J Syst Evol Microbiol 52, 229-234.
22. Ivanova, E. P., Sawabe, T., Lysenko, A.M., Gorshkova, N.M., Svetashev, V. I., Nicolau, D. V., Yumoto, N., Taguchi, T., Yoshikawa, S. & other authors (2002b). Pseudoalteromonas ruthenica sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 52, 235-240.
23. Ivanova, E. P., Sawabe, T., Lysenko, A. M., Gorshkova, N. M., Hayashi, K., Zhukova, N. V., Nicolau, D. V., Christen, R. & Mikhailov, V. V. (2002c). Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus. Int J Syst Evol Microbiol 52, 1759-1766.
24. Ivanova, E. P., Shevchenko, L. S., Sawabe, T., Lysenko, A. M., Svetashev, V. I., Gorshkova, N. M., Satomi, M., Christen, R. & Mikhailov, V. V. (2002d). Pseudoalteromonas maricaloris sp. nov., isolated from an Australian sponge, and reclassification of [Pseudoalteromonas aurantia] NCIMB 2033 as Pseudoalteromonas flavipulchra sp. nov. Int J Syst Evol Microbiol 52, 263-271.
25. Ivanova, E. P., Gorshkova, N. M., Zhukova, N. V., Lysenko, A. M., Zelepuga, E. A., Prokof'eva, N. G., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2004). Characterization of Pseudoalteromonas distincta-like sea-water isolates and description of Pseudoalteromonas aliena sp. nov. Int J Syst Evol Microbiol 54, 1431-1437.
26. Kamekura, M. & Kates, M. (1988). Lipids of halophilic archaebacteria. In Halophilic Bacteria II, pp. 25-54. Edited by F. Rodriguez-Valera. Boca Raton, FL: CRC Press.
27. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
28. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
29. Lau, S. C., Tsoi, M. M., Li, X., Dobretsov, S., Plakhotnikova, Y., Wong, P. K. & Qian, P. Y. (2005). Pseudoalteromonas spongiae sp. nov., a novel member of the c-Proteobacteria isolated from the sponge Mycale adhaerens in Hong Kong waters. Int J Syst Evol Microbiol 55, 1593-1596.
30. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
31. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
32. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
33. Nam, Y.-D., Chang, H.-W., Park, J. R., Kwon, H.-Y., Quan, Z.-X., Park, Y.-H., Lee, J.-S., Yoon, J.-H. & Bae, J.-W. (2007). Pseudoalteromonas marina sp. nov., a marine bacterium isolated from tidal flats of the Yellow Sea, and reclassification of Pseudoalteromonas sagamiensis as Algicola sagamiensis comb. nov. Int J Syst Evol Microbiol 57, 12-18.
34. Park, Y.-D., Baik, K. S., Yi, H., Bae, K. S. & Chun, J. (2005). Pseudoalteromonas byunsanensis sp. nov., isolated from tidal flat sediment in Korea. Int J Syst Evol Microbiol 55, 2519-2523. (Pubitemid 41646437)
35. Romanenko, L. A., Zhukova, N. V., Lysenko, A. M., Mikhailov, V. V. & Stackebrandt, E. (2003a). Assignment of 'Alteromonas marinoglutinosa' NCIMB 1770 to Pseudoalteromonas mariniglutinosa sp. nov., nom. rev., comb. nov. Int J Syst Evol Microbiol 53, 1105-1109.
36. Romanenko, L. A., Zhukova, N. V., Rohde, M., Lysenko, A. M., Mikhailov, V. V. & Stackebrandt, E. (2003b). Pseudoalteromonas agarivorans sp. nov., a novel marine agarolytic bacterium. Int J Syst Evol Microbiol 53, 125-131.
37. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
38. T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species. Int J Syst Evol Microbiol 50, 265-271.
39. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
40. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
41. Venkateswaran, K. & Dohmoto, N. (2000). Pseudoalteromonas peptidolytica sp. nov., a novel marine mussel-thread-degrading bacterium isolated from the Sea of Japan. Int J Syst Evol Microbiol 50, 565-574.
42. Ventosa, A., Quesada, E., Rodriguez-Valera, F., Ruiz-Berraquero, F. & Ramos-Cormenzana, A. (1982). Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128, 1959-1968.
43. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
44. Xu, X.-W., Wu, Y.-H., Wang, C.-S., Oren, A., Zhou, P.-J. & Wu, M. (2007a). Haloferax larsenii sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57, 717-720.
45. Xu, X.-W., Wu, Y.-H., Zhou, Z., Wang, C.-S., Zhou, Y.-G., Zhang, H.-B., Wang, Y. & Wu, M. (2007b). Halomonas saccharevitans sp. nov., Halomonas arcis sp. nov. and Halomonas subterranea sp. nov., halophilic bacteria isolated from hypersaline environments of China. Int J Syst Evol Microbiol 57, 1619-1624.