메뉴 건너뛰기




Volumn 15, Issue 1, 2009, Pages 176-186

Functionality and substrate specificity of human box H/ACA guide RNAs

Author keywords

Human box H ACA RNA; Pseudouridine; Pseudouridylation prediction; Pseudouridylation reconstitution; Ribosomal RNA; snoGPS

Indexed keywords

CELL EXTRACT; PSEUDOURIDINE; RIBOSOME RNA;

EID: 58149095476     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.1361509     Document Type: Article
Times cited : (32)

References (40)
  • 1
    • 17844373810 scopus 로고    scopus 로고
    • tRNA m7G methyltransferase Trm8p/Trm82p: Evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p
    • Alexandrov, A., Grayhack, E.J., and Phizicky, E.M. 2005. tRNA m7G methyltransferase Trm8p/Trm82p: Evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p. RNA 11: 821-830.
    • (2005) RNA , vol.11 , pp. 821-830
    • Alexandrov, A.1    Grayhack, E.J.2    Phizicky, E.M.3
  • 2
    • 0001918945 scopus 로고    scopus 로고
    • Location and distribution of modified nucleotides in tRNA
    • eds. H. Grosjean and R. Benner, pp, ASM, Washington, DC
    • Auffinger, P. and Weshoof, E. 1998. Location and distribution of modified nucleotides in tRNA. In Modification and editing of RNA (eds. H. Grosjean and R. Benner), pp. 569-576. ASM, Washington, DC.
    • (1998) Modification and editing of RNA , pp. 569-576
    • Auffinger, P.1    Weshoof, E.2
  • 3
    • 0002950540 scopus 로고    scopus 로고
    • Small nucleolar RNAs guide the ribose methylations of eukaryotic rRNAs
    • eds. H. Grosjean and H. Benner, pp, ASM, Washington, DC
    • Bachellerie, J.-P. and Cavaille, J. 1998. Small nucleolar RNAs guide the ribose methylations of eukaryotic rRNAs. In Modification and editing of RNA (eds. H. Grosjean and H. Benner), pp. 255-272. ASM, Washington, DC.
    • (1998) Modification and editing of RNA , pp. 255-272
    • Bachellerie, J.-P.1    Cavaille, J.2
  • 4
    • 0038721061 scopus 로고    scopus 로고
    • A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast
    • Badis, G., Fromont-Racine, M., and Jacquier, A. 2003. A snoRNA that guides the two most conserved pseudouridine modifications within rRNA confers a growth advantage in yeast. RNA 9: 771-779.
    • (2003) RNA , vol.9 , pp. 771-779
    • Badis, G.1    Fromont-Racine, M.2    Jacquier, A.3
  • 5
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
    • Bakin, A. and Ofengand, J. 1993. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique. Biochemistry 32: 9754-9762.
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 6
    • 58149084229 scopus 로고    scopus 로고
    • Bjork, G.R. 1995. Biosynthesis and function of modified nucleotides. In tRNA: Structure, biosynthesis, and function (eds. D. Soll and U. RajBhandary), pp. 165-205. ASM, Washington, DC.
    • Bjork, G.R. 1995. Biosynthesis and function of modified nucleotides. In tRNA: Structure, biosynthesis, and function (eds. D. Soll and U. RajBhandary), pp. 165-205. ASM, Washington, DC.
  • 7
    • 1542748076 scopus 로고    scopus 로고
    • Blanchette, M., Kent, W.J., Riemer, C., Elnitski, L., Smit, A.F., Roskin, K.M., Baertsch, R., Rosenbloom, K., Clawson, H., Green, E.D., et al. 2004. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14: 708-715.
    • Blanchette, M., Kent, W.J., Riemer, C., Elnitski, L., Smit, A.F., Roskin, K.M., Baertsch, R., Rosenbloom, K., Clawson, H., Green, E.D., et al. 2004. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res. 14: 708-715.
  • 8
    • 0033555266 scopus 로고    scopus 로고
    • Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs
    • Bortolin, M.L., Ganot, P., and Kiss, T. 1999. Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs. EMBO J. 18: 457-469.
    • (1999) EMBO J , vol.18 , pp. 457-469
    • Bortolin, M.L.1    Ganot, P.2    Kiss, T.3
  • 9
    • 9344271506 scopus 로고    scopus 로고
    • Modified nucleotides at the 5′ end of human U2 snRNA are required for spliceosomal E-complex formation
    • Donmez, G, Hartmuth, K, and Lührmann, R. 2004. Modified nucleotides at the 5′ end of human U2 snRNA are required for spliceosomal E-complex formation. RNA 10: 1925-1933.
    • (2004) RNA , vol.10 , pp. 1925-1933
    • Donmez, G.1    Hartmuth, K.2    Lührmann, R.3
  • 10
    • 0343183144 scopus 로고    scopus 로고
    • In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs
    • Dragon, F., Pogacić, V., and Filipowicz, W. 2000. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. Mol. Cell. Biol. 20: 3037-3048.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 3037-3048
    • Dragon, F.1    Pogacić, V.2    Filipowicz, W.3
  • 11
    • 0030711050 scopus 로고    scopus 로고
    • Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
    • Ganot, P., Bortolin, M.L., and Kiss, T. 1997a. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89: 799-809.
    • (1997) Cell , vol.89 , pp. 799-809
    • Ganot, P.1    Bortolin, M.L.2    Kiss, T.3
  • 12
    • 0031003901 scopus 로고    scopus 로고
    • The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation
    • Ganot, P., Caizergues-Ferrer, M., and Kiss, T. 1997b. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes & Dev. 11: 941-956.
    • (1997) Genes & Dev , vol.11 , pp. 941-956
    • Ganot, P.1    Caizergues-Ferrer, M.2    Kiss, T.3
  • 13
    • 0028943560 scopus 로고
    • Posttranscriptionally modified nucleosides in transfer RNA: Their locations and frequencies
    • Grosjean, H., Sprinzl, M., and Steinberg, S. 1995. Posttranscriptionally modified nucleosides in transfer RNA: Their locations and frequencies. Biochimie 77: 139-141.
    • (1995) Biochimie , vol.77 , pp. 139-141
    • Grosjean, H.1    Sprinzl, M.2    Steinberg, S.3
  • 14
    • 0037439213 scopus 로고    scopus 로고
    • tRNA transfers to the limelight
    • Hopper, A.K. and Phizicky, E.M. 2003. tRNA transfers to the limelight. Genes & Dev. 17: 162-180.
    • (2003) Genes & Dev , vol.17 , pp. 162-180
    • Hopper, A.K.1    Phizicky, E.M.2
  • 15
    • 0035253857 scopus 로고    scopus 로고
    • A small nucleolar guide RNA functions both in 2′-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA
    • Jády, B.E. and Kiss, T. 2001. A small nucleolar guide RNA functions both in 2′-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. EMBO J. 20: 541-551.
    • (2001) EMBO J , vol.20 , pp. 541-551
    • Jády, B.E.1    Kiss, T.2
  • 16
    • 34548780330 scopus 로고    scopus 로고
    • Biochemical purification of box H/ACA RNPs involved in pseudouridylation
    • Karijolich, J., Stephenson, D., and Yu, Y.T. 2007. Biochemical purification of box H/ACA RNPs involved in pseudouridylation. Methods Enzymol. 425: 241-262.
    • (2007) Methods Enzymol , vol.425 , pp. 241-262
    • Karijolich, J.1    Stephenson, D.2    Yu, Y.T.3
  • 17
    • 0037292453 scopus 로고    scopus 로고
    • Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center
    • King, T.H., Liu, B., McCully, R.R., and Fournier, M.J. 2003. Ribosome structure and activity are altered in cells lacking snoRNPs that form pseudouridines in the peptidyl transferase center. Mol. Cell 11: 425-435.
    • (2003) Mol. Cell , vol.11 , pp. 425-435
    • King, T.H.1    Liu, B.2    McCully, R.R.3    Fournier, M.J.4
  • 18
    • 2942718696 scopus 로고    scopus 로고
    • Human box H/ ACA pseudouridylation guide RNA machinery
    • Kiss, A.M., Jády, B.E., Bertrand, E., and Kiss, T. 2004. Human box H/ ACA pseudouridylation guide RNA machinery. Mol. Cell. Biol. 24: 5797-5807.
    • (2004) Mol. Cell. Biol , vol.24 , pp. 5797-5807
    • Kiss, A.M.1    Jády, B.E.2    Bertrand, E.3    Kiss, T.4
  • 19
    • 37349128219 scopus 로고    scopus 로고
    • rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity
    • Liang, X.H., Liu, Q., and Fournier, M.J. 2007. rRNA modifications in an intersubunit bridge of the ribosome strongly affect both ribosome biogenesis and activity. Mol. Cell 28: 965-977.
    • (2007) Mol. Cell , vol.28 , pp. 965-977
    • Liang, X.H.1    Liu, Q.2    Fournier, M.J.3
  • 20
    • 0037447130 scopus 로고    scopus 로고
    • Pseudouridylation (ψ) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism
    • Ma, X., Zhao, X., and Yu, Y.T. 2003. Pseudouridylation (ψ) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism. EMBO J. 22: 1889-1897.
    • (2003) EMBO J , vol.22 , pp. 1889-1897
    • Ma, X.1    Zhao, X.2    Yu, Y.T.3
  • 21
    • 22744442531 scopus 로고    scopus 로고
    • Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism
    • Ma, X., Yang, C., Alexandrov, A., Grayhack, E.J., Behm-Ansmant, I., and Yu, Y.T. 2005. Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism. EMBO J. 24: 2403-2413.
    • (2005) EMBO J , vol.24 , pp. 2403-2413
    • Ma, X.1    Yang, C.2    Alexandrov, A.3    Grayhack, E.J.4    Behm-Ansmant, I.5    Yu, Y.T.6
  • 22
    • 0025580878 scopus 로고
    • The numerous modified nucleotides in eukaryotic ribosomal RNA
    • Maden, B.E. 1990. The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 39: 241-303.
    • (1990) Prog. Nucleic Acid Res. Mol. Biol , vol.39 , pp. 241-303
    • Maden, B.E.1
  • 23
    • 0002425959 scopus 로고    scopus 로고
    • Posttranscriptional modifications in the U small nuclear RNAs
    • eds. H. Grosjean and R. Benner, pp, ASM, Washington, DC
    • Massenet, S., Mougin, A., and Branlant, C. 1998. Posttranscriptional modifications in the U small nuclear RNAs. In Modification and editing of RNA (eds. H. Grosjean and R. Benner), pp. 201-228. ASM, Washington, DC.
    • (1998) Modification and editing of RNA , pp. 201-228
    • Massenet, S.1    Mougin, A.2    Branlant, C.3
  • 24
    • 0030771087 scopus 로고    scopus 로고
    • Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA
    • Ni, J., Tien, A.L., and Fournier, M.J. 1997. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell 89: 565-573.
    • (1997) Cell , vol.89 , pp. 565-573
    • Ni, J.1    Tien, A.L.2    Fournier, M.J.3
  • 25
    • 0002387035 scopus 로고    scopus 로고
    • The pseudouridine residues of rRNA: Number, location, biosynthesis, and function
    • eds. H. Grosjean and R. Benner, pp, ASM, Washington, DC
    • Ofengand, J. and Fournier, M. 1998. The pseudouridine residues of rRNA: Number, location, biosynthesis, and function. In Modification and editing of RNA (eds. H. Grosjean and R. Benner), pp. 229-253. ASM, Washington, DC.
    • (1998) Modification and editing of RNA , pp. 229-253
    • Ofengand, J.1    Fournier, M.2
  • 26
    • 54449100396 scopus 로고    scopus 로고
    • Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit
    • Piekna-Przybylska, D., Przybylski, P., Baudin-Baillieu, A., Rousset, J.P., and Fournier, M.J. 2008. Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit. J. Biol. Chem. 283: 26026-26036.
    • (2008) J. Biol. Chem , vol.283 , pp. 26026-26036
    • Piekna-Przybylska, D.1    Przybylski, P.2    Baudin-Baillieu, A.3    Rousset, J.P.4    Fournier, M.J.5
  • 27
    • 0034459569 scopus 로고    scopus 로고
    • Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10
    • Pogacić, V., Dragon, F., and Filipowicz, W. 2000. Human H/ACA small nucleolar RNPs and telomerase share evolutionarily conserved proteins NHP2 and NOP10. Mol. Cell. Biol. 20: 9028-9040.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 9028-9040
    • Pogacić, V.1    Dragon, F.2    Filipowicz, W.3
  • 29
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., and Séraphin, B. 1999. A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotechnol. 17: 1030-1032.
    • (1999) Nat. Biotechnol , vol.17 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Séraphin, B.6
  • 30
    • 4043120552 scopus 로고    scopus 로고
    • Genome-wide searching for pseudouridylation guide snoRNAs: Analysis of the Saccharomyces cerevisiae genome
    • Schattner, P., Decatur, W.A., Davis, C.A., Ares Jr., M., Fournier, M.J., and Lowe, T.M. 2004. Genome-wide searching for pseudouridylation guide snoRNAs: Analysis of the Saccharomyces cerevisiae genome. Nucleic Acids Res. 32: 4281-4296.
    • (2004) Nucleic Acids Res , vol.32 , pp. 4281-4296
    • Schattner, P.1    Decatur, W.A.2    Davis, C.A.3    Ares Jr., M.4    Fournier, M.J.5    Lowe, T.M.6
  • 31
    • 29844435528 scopus 로고    scopus 로고
    • A computational screen for mammalian pseudouridylation guide H/ACA RNAs
    • Schattner, P., Barberan-Soler, S., and Lowe, T.M. 2006. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. RNA 12: 15-25.
    • (2006) RNA , vol.12 , pp. 15-25
    • Schattner, P.1    Barberan-Soler, S.2    Lowe, T.M.3
  • 34
    • 21844473540 scopus 로고    scopus 로고
    • The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae
    • Torchet, C., Badis, G., Devaux, F., Costanzo, G., Werner, M., and Jacquier, A. 2005. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA 11: 928-938.
    • (2005) RNA , vol.11 , pp. 928-938
    • Torchet, C.1    Badis, G.2    Devaux, F.3    Costanzo, G.4    Werner, M.5    Jacquier, A.6
  • 35
    • 2442542173 scopus 로고    scopus 로고
    • Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins
    • Wang, C. and Meier, U.T. 2004. Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins. EMBO J. 23: 1857-1867.
    • (2004) EMBO J , vol.23 , pp. 1857-1867
    • Wang, C.1    Meier, U.T.2
  • 36
    • 18744363324 scopus 로고    scopus 로고
    • Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140
    • Wang, C., Query, C.C., and Meier, U.T. 2002. Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140. Mol. Cell. Biol. 22: 8457-8466.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 8457-8466
    • Wang, C.1    Query, C.C.2    Meier, U.T.3
  • 37
    • 0032189145 scopus 로고    scopus 로고
    • Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
    • Yu, Y.T., Shu, M.D., and Steitz, J.A. 1998. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J. 17: 5783-5795.
    • (1998) EMBO J , vol.17 , pp. 5783-5795
    • Yu, Y.T.1    Shu, M.D.2    Steitz, J.A.3
  • 38
  • 39
    • 1642447085 scopus 로고    scopus 로고
    • Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes
    • Zhao, X. and Yu, Y.T. 2004. Pseudouridines in and near the branch site recognition region of U2 snRNA are required for snRNP biogenesis and pre-mRNA splicing in Xenopus oocytes. RNA 10: 681-690.
    • (2004) RNA , vol.10 , pp. 681-690
    • Zhao, X.1    Yu, Y.T.2
  • 40
    • 33846923097 scopus 로고    scopus 로고
    • Incorporation of 5-fluorouracil into U2 snRNA blocks pseudouridylation and pre-mRNA splicing in vivo
    • Zhao, X. and Yu, Y.T. 2007. Incorporation of 5-fluorouracil into U2 snRNA blocks pseudouridylation and pre-mRNA splicing in vivo. Nucleic Acids Res. 35: 550-558.
    • (2007) Nucleic Acids Res , vol.35 , pp. 550-558
    • Zhao, X.1    Yu, Y.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.