An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branchpoint recognition region in Xenopus oocytes

RNA

Volumn 8, Issue 12, 2002, Pages 1515-1525

  Zhao, Xinliang ^a   Li, Zhu Hong ^b   Terns, Rebecca M ^b   Terns, Michael P ^b   Yu, Yi Tao ^a  

^a UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

5 fluorouridine; H ACA guide RNA; Nucleoplasm; Pseudouridylation; U2 snRNA; Xenopus oocytes

Indexed keywords

FLUOROURIDINE; MESSENGER RNA; PSEUDOURIDINE; RNA; SMALL NUCLEAR RNA;

ARTICLE; BIOGENESIS; CHEMICAL MODIFICATION; METHYLATION; MOLECULAR RECOGNITION; NONHUMAN; OOCYTE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN LOCALIZATION; RNA SEQUENCE; RNA SPLICING; SPLICEOSOME; XENOPUS;

ANIMALS; BASE SEQUENCE; CELL NUCLEUS STRUCTURES; FEMALE; MOLECULAR SEQUENCE DATA; OOCYTES; RIBONUCLEOPROTEINS, SMALL NUCLEOLAR; RNA; RNA, SMALL NUCLEAR; RNA, SMALL NUCLEOLAR; URIDINE; XENOPUS;

EID: 0036913514     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (31)

1. Burge CB, Tuschl TH, Sharp PA. 1999. Splicing of precursors to mRNAs by the spliceosomes. In: Gesteland RF, Cech TR, Atkins JF, eds. The RNA World, 2nd Ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp 525-560.
2. Darzacq X, Jady BE, Verheggen C, Kiss AM, Bertrand E, Kiss T. 2002. Cajal body-specific small nuclear RNAs: A novel class of 2′-O-methylation and pseudouridylation guide RNAs. EMBO J 21:2746-2756.
3. Dragon F, Pogacic V, Filipowicz W. 2000. In vitro assembly of human H/ACA small nucleolar RNPs reveals unique features of U17 and telomerase RNAs. Mol Cell Biol 20:3037-3048.
4. Filipowicz W, Pogacic V. 2002. Biogenesis of small nucleolar ribonucleoproteins. Curr Opin Cell Biol 14:319-327.
5. Ganot P, Jady BE, Bortolin ML, Darzacq X, Kiss T. 1999. Nucleolar factors direct the 2′-O-ribose methylation and pseudouridylation of U6 spliceosomal RNA. Mol Cell Biol 19:6906-6917.
6. Huttenhofer A, Kiefmann M, Meier-Ewert S, O'Brien J, Lehrach H, Bachellerie JP, Brosius J. 2001. RNomics: An experimental approach that identifies 201 candidates for novel, small, nonmessenger RNAs in mouse. EMBO J 20:2943-2953.
7. Jady BE, Kiss T. 2001. A small nucleolar guide RNA functions both in 2′-O-ribose methylation and pseudouridylation of the U5 spliceosomal RNA. EMBO J 20:541-551.
8. Kiss T. 2001. Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J 20:3617-3622.
9. Liang XH, Xu YX, Michaeli S. 2002. The spliced leader-associated RNA is a trypanosome-specific sn(o) RNA that has the potential to guide pseudouridine formation on the SL RNA. RNA 8:237-246.
10. Massenet S, Mougin A, Branlant C. 1998. Posttranscriptional modifications in the U small nuclear RNAs. In: Grosjean H, Benne R, eds. The Modification and Editing of RNA. Washington, DC: ASM Press. pp 201-228.
11. Narayanan A, Lukowiak A, Jady BE, Dragon F, Kiss T, Terns RM, Terns MP. 1999a. Nucleolar localization signals of box H/ACA small nucleolar RNAs. EMBO J 18:5120-5130.
12. Narayanan A, Speckmann W, Terns R, Terns MP. 1999b. Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli. Mol Biol Cell 10:2131-2147.
13. Newby MI, Greenbaum NL. 2001. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture. RNA 7:833-845.
14. Patton JR, Jacobson MR, Pederson T. 1994. Pseudouridine formation in U2 small nuclear RNA. Proc Natl Acad Sci USA 91: 3324-3328.
15. Peattie DA. 1979. Direct chemical method for sequencing RNA. Proc Natl Acad Sci USA 76:1760-1764.
16. Peculis BA. 1997. RNA processing-pocket guides to ribosomal RNA. Curr Biol 7:480-482.
17. Peculis BA, Gall JG. 1992. Localization of the nucleolar protein NO38 in amphibian oocytes. J Cell Biol 116:1-14.
18. Reddy R, Busch H. 1988. Small nuclear RNAs: RNA sequences, structure, and modifications. In: Birnstiel ML, ed. Structure and Function of Major and Minor Small Nuclear Ribonucleoprotein Particles. Berlin, Germany: Springer-Verlag. pp 1-37.
19. Smith CM, Steitz JA. 1997. Sno storm in the nucleolus: New roles for myriad small RNPs. Cell 89:669-672.
20. Speckmann W, Narayanan A, Terns R, Terns MP. 1999. Nuclear retention elements of U3 small nucleolar RNA. Mol Cell Biol 19:8412-8421.
21. Terns MP, Grimm C, Lund E, Dahlberg JE. 1995. A common maturation pathway for small nucleolar RNAs. EMBO J 14;4860-4871.
22. Terns MP, Terns RM. 2002. Small nucleolar RNAs: Versatile transacting molecules of ancient evolutionary origin. Gene Expr 10:17-39.
23. Tollervey D, Kiss T. 1997. Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol 9:337-342.
24. Tycowski KT, You ZH, Graham PJ, Steitz JA. 1998. Modification of U6 spliceosomal RNA is guided by other small RNAs. Mol Cell 2:629-638.
25. Venema J, Tollervey D. 1999. Ribosome synthesis in Saccharomyces cerevisiae. Annu Rev Genet 33:261-311.
26. Weinstein LB, Steitz JA. 1999. Guided tours: From precursor snoRNA to functional snoRNP. Curr Opin Cell Biol 11:378-384.
27. Wu CH, Murphy C, Gall JG. 1996. The Sm binding site targets U7 snRNA to coiled bodies (spheres) of amphibian oocytes. RNA 2:811-823.
28. Yu Y-T, Scharl EC, Smith CM, Steitz JA. 1999. The growing world of small nuclear ribonucleoproteins. In: Gesteland RF, Cech TR, Atkins JF, eds. The RNA World, 2nd Ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp 487-524.
29. Yu YT, Shu MD, Narayanan A, Terns RM, Terns MP, Steitz JA. 2001. Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes. J Cell Biol 152:1279-1288.
30. Yu YT, Shu MD, Steitz JA. 1998. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J 17:5783-5795.
31. Yu Y-T, Tarn W-Y, Yario TA, Steitz JA. 1996. More Sm sn RNAs from vertebrate cells. Exp Cell Res 229:276-281.