Phenotypic instability and epigenetic variability in a diploid potato of hybrid origin, Solanum ruiz-lealii

BMC Plant Biology

Volumn 9, Issue , 2009, Pages

  Marfil, Carlos F ^a   Camadro, Elsa L ^a   Masuelli, Ricardo W ^a  

^a Facultad de Ciencias Naturales e Instituto M Lillo   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

SOLANUM; SOLANUM JAMESII; SOLANUM RUIZ-LEALII; SOLANUM TUBEROSUM;

AZACITIDINE; MITOCHONDRIAL DNA; PLANT DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CELL NUCLEUS; CHIMERA; CYTOLOGY; DIPLOIDY; DNA METHYLATION; FLOWER; GENETIC EPIGENESIS; GENETIC MARKER; GENETICS; GENOMIC INSTABILITY; HISTOLOGY; MITOCHONDRIAL GENOME; PHENOTYPE; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SOLANUM;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; AZACITIDINE; CELL NUCLEUS; CHIMERA; DIPLOIDY; DNA METHYLATION; DNA, MITOCHONDRIAL; DNA, PLANT; EPIGENESIS, GENETIC; FLOWERS; GENETIC MARKERS; GENOME, MITOCHONDRIAL; GENOMIC INSTABILITY; PHENOTYPE; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SOLANUM;

EID: 62349088361     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-9-21     Document Type: Article

References (53)

1. Nuevas especies de Solanum (Tuberarium) de la zona semiárida del NW Argentino. HE Brücher, Revista de la Facultad de Ciencias Agrarias UNCuyo 1962 9 7 14
2. JG Hawkes JP Hjerting, The potatoes of Argentina, Brazil, Paraguay and Uruguay. A biosystematic study Oxford University Press, Oxford 1969
3. Examination of the hybrid origin of the wild potato Solanum ruiz-lealii Brücher. JP Raimondi IE Peralta RW Masuelli S Feingold EL Camadro, Plant Systematics and Evolution 2005 253 33 51
4. Multiple differentiation of plasmons of diploid species of Solanum. P Grun M Aubertin A Radlow, Genetics 1962 47 1321 1333 17248130
5. Evolution of the cultivated potato: A cytoplasmic analysis. P Grun, The Biology and Taxonomy of the Solanaceae 1979 655 665
6. Functioning and variation of cytoplasmic genomes: Lessons from cytoplasmic-nuclear interactions affecting male fertility in plants. MR Hanson MF Conde, International Review of Cytology 1985 94 213 267
7. Mitochondrial tuning fork in nuclear homeotic functions. MK Zubko, Trends in Plant Science 2004 9 61 64 15106588
8. Interactions of mitochondrial and nuclear genes that affect male gametophyte development. MR Hanson S Bentolila, Plant Cell 2004 16 S154 S169 15131248
9. Characterization and comparison of chloroplast DNA in several Solanum tuberosum subspecies involved in cytoplasmic sterility. B Buckner BB Hyde, Journal Cell Biology 1982 95 274
10. The nucleo-mitochondrial conflict in cytoplasmic male sterilities revisited. F Budar P Touzet R De Paepe, Genetica 2003 117 3 16 12656568
11. The molecular basis of cytoplasmic male sterility and fertility restoration. PS Schnable RP Wise, Trends in Plant Science 1998 3 175 180
12. DNA methylation, a key regulator of plant development and other processes. EJ Finnegan WJ Peacock ES Dennis, Curr Opin Genet Dev 2000 10 2 217 223 10753779
13. Epigenetics and plant evolution. AR Rapp JF Wendel, New Phytologist 2005 168 81 91 16159323
14. How does DNA methylation repress transcription. SU Kass D Pruss AP Wolffe, Trends Genet 1997 13 444 449 9385841
15. Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays. X Zhang S Shiu A Cal JO Borevitz, PLoS Genet 2008 4 3 e1000032 18369451
16. Ectopic hypermethylation of flower-specific genes in Arabidopsis. SE Jacobsen H Sakai EJ Finnegan X Cao EM Meyerowitz, Current Biology 2000 10 179 186 10704409
17. Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis. SE Jacobsen EM Meyerowitz, Science 1997 277 1100 1103 9262479
18. The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. WJJ Soppe SE Jacobsen C Alonso-Blanco JP Jackson T Kakutani M Koornneef AJ Peeters, Molecular Cell 2000 6 791 802 11090618
19. Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. EJ Finnegan WJ Peacock ES Dennis, Proc Natl Acad Sci USA 1996 93 8449 8454 8710891
20. Demethylation-Induced developmental pleiotropy in Arabidopsis. MJ Ronemus M Galbiati C Ticknor J Chen SL Dellaporta, Science 1996 273 654 657 8662558
21. An epigenetic mutation responsible for natural variation in floral symmetry. P Cubas C Vincent E Coen, Nature 1999 401 157 161 10490023
22. A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. K Manning M Tor M Poole Y Hong AJ Thompson GJ King JJ Giovannoni GB Seymour, Nat Genet 2006 38 948 952 16832354
23. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. A Madlung RW Masuelli B Watson SH Reynolds J Davison L Comai, Plant Physiology 2002 129 733 746 12068115
24. Hipometilacián del ADN por tratamiento químico en tres especies tuberosas de Solanum. R Torres, MSc thesis Universidad Nacional de Mar del Plata 2005
25. H Ross, Potato breeding-problems and perspectives. Supplement 13 to Journal of plant breeding Paul Parey, Berlin, Horn W, Röbbelen G, 1986 132
26. Epigenetic variation in Arabidopsis disease resistance. TL Stokes BN Kunkel EJ Richards, Genes & Development 2002 16 171 182 11799061
27. Genomic instability in Solanum tuberosum × Solanum kurtzianum interspecific hybrids. CF Marfil RW Masuelli J Davison L Comai, Genome 2006 49 104 113 16498460
28. DNA methylation and epigenetic inheritance in plants and filamentous fungi. RA Martienssen V Colot, Science 2001 293 1070 1074 11498574
29. Arabidopsis thaliana DNA methylation mutants. A Vongs T Kakutani RA Martienssen EJ Richards, Science 1993 260 1926 1928 8316832
30. Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana. T Kakutani K Munakata EJ Richards H Hirochika, Genetics 1999 151 831 838 9927473
31. Genetic and epigentic consequences of recent hybridization and polyploidy in Spartina (Poaceae). A Salmon L Malika L Ainouche JF Wendel, Mol Ecol 2005 14 1163 1175 15773943
32. Restoration of stamen development and production of functional pollen in an alloplasmic CMS tobacco line by ectopic expression of the Arabidopsis thaliana SUPERMAN gene. A Bereterbide M Hernould I Farbos K Glimelius A Mouras, Plant J 2002 29 607 615 11874573
33. Infraspecific DNA methylation polymorphism in cotton (Gossypium hirsutum L). AL Keyte R Percifield B Liu JF Wendel, Journal of Heredity 2006 97 444 450 16987937
34. Substitutes for genome differentiation in tuber-bearing Solanum: Interspecific pollen-pistil incompatibility, nuclear-cytoplasmic male sterility, and endosperm. EL Camadro D Carputo SJ Peloquin, Theor Appl Genet 2004 109 7 1369 1376 15278199
35. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. MT Cervera L Ruiz-García JM Martínez-Zapater, Mol Genet Genomics 2002 268 543 552 12471452
36. Brassica oleracea displays a high level of DNA methylation polymorphism. A Salmon J Clotault E Jenczewski V Chable MJ Manzanares-Dauleux, Plant Science 2008 174 61 70
37. Alcoholic-hydrocholric acid carmine as a stain of chromosomes in squash preparation. R Snow, Stain Technol 1963 38 9 13 13989724
38. A plant DNA minipreparation: version II. SL Dellaporta J Wood JB Hicks, Plant Molecular Biology 1983 1 19 21
39. AFLP: a new concept for DNA fingerprinting. P Vos R Hogers M Bleeker M Reijans T van de Lee M Hornes A Frijters J Pot J Peleman M Kuiper M Zabeau, Nucleic Acid Research 1995 23 4407 4414
40. Editing status of mat-r transcripts in mitochondria from two plant species: C-to-U changes occur in putative functional RT and maturase domains. D Bégu A Mercado JC Farré A Moenne L Holuigue A Araya X Jordana, Current Genetics 1998 33 420 428 9644205
41. The potato mitochondrial ATP synthase subunit 9: Gene structure, RNA editing and partial protein sequence. P Dell'Orto A Moenne PV Graves X Jordana, Plant Science 1993 88 45 53
42. The rpl5-rps14-cob gene arrangement in Solanum tuberosum:rps14 is a transcribed and unedited pseudogene. V Quĩones S Zanlungo A Moenne I Gámez L Holuigue S Litvak X Jordana, Plant Molecular Biology 1996 31 937 943 8806426
43. RNA editing of apocytochrome b (cob) transcripts in mitochondria from two genera of plants. S Zanlungo D Bégu V Quĩones A Araya X Jordana, Current Genetics 1993 24 344 348 7504589
44. Splicing and editing of rps10 transcripts in potato mitochondria. S Zanlungo V Quĩones A Moenne L Holuigue X Jordana, Current Genetics 1995 27 565 571 7553943
45. Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms. GE Reyna-Lápez J Simpson J Ruiz-Herrera, Mol Gen Genet 1997 253 703 710 9079881
46. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. LZ Xiong CG Xu MA Saghai Maroof Q Zhang, Mol Gen Genet 1999 261 439 446 10323223
47. Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases. M McClelland M Nelson E Raschke, Nucleic Acids Research 1994 22 3640 3659 7937074
48. REBASE - restriction enzymes and methylases. RJ Roberts D Macelis, Nucleic Acids Research 2001 29 268 269 11125108
49. The principles and practice of numerical classification. PHA Sneath RR Sokal, WH Freeman, San Francisco, Ca 1973
50. NTSYS-pc numerical taxanomy and multivariate system. FJ Rohlf, Exeter Software, Setauket, New York 1992 1569698
51. WinBoot: A program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. IV Yap RJ Nelson, International Rice Research Institute, Manila 1996
52. Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. PD Rabinowicz K Schutz N Dedhia C Yordan LD Parnell L Stein WR McCombie RA Martienssen, Nat Genet 1999 23 305 308 10545948
53. Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats. RM Stupar J Song AL Tek Z Cheng F Dong J Jiang, Genetics 2002 162 1435 1444 12454086