-
1
-
-
10644237968
-
RNAi mediated pathways in the nucleus
-
This excellent review describes the involvement of RNAi-related processes in directing DNA methylation, heterochromatin formation and DNA elimination. The review also discusses how RNAi silences unpaired DNA regions during meiosis.
-
Matzke M.A., and Birchler J. RNAi mediated pathways in the nucleus. Nat Rev Genet 6 (2005) 24-35. This excellent review describes the involvement of RNAi-related processes in directing DNA methylation, heterochromatin formation and DNA elimination. The review also discusses how RNAi silences unpaired DNA regions during meiosis.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 24-35
-
-
Matzke, M.A.1
Birchler, J.2
-
2
-
-
0037046810
-
Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
Cao X., and Jacobsen S.E. Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 12 (2002) 1138-1144
-
(2002)
Curr Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
3
-
-
0347033302
-
Role of DRM and CMT3 methyltransferases in RNA directed DNA methylation
-
Cao X., Aufsatz W., Zilberman D., Mette M.F., Huang M., Matzke M., and Jacobsen S. Role of DRM and CMT3 methyltransferases in RNA directed DNA methylation. Curr Biol 13 (2003) 2212-2217
-
(2003)
Curr Biol
, vol.13
, pp. 2212-2217
-
-
Cao, X.1
Aufsatz, W.2
Zilberman, D.3
Mette, M.F.4
Huang, M.5
Matzke, M.6
Jacobsen, S.7
-
4
-
-
1442305898
-
RNA silencing genes control de novo DNA methylation
-
Chan S.W., Zilberman D., Xie Z., Johansen L., Carrington J., and Jacobsen S. RNA silencing genes control de novo DNA methylation. Science 303 (2004) 1336
-
(2004)
Science
, vol.303
, pp. 1336
-
-
Chan, S.W.1
Zilberman, D.2
Xie, Z.3
Johansen, L.4
Carrington, J.5
Jacobsen, S.6
-
5
-
-
2342505910
-
Involvement of a putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
-
Kanno T., Mette M., Kreil D., Aufstaz W., Matzke M., and Matzke A. Involvement of a putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 14 (2004) 801-805
-
(2004)
Curr Biol
, vol.14
, pp. 801-805
-
-
Kanno, T.1
Mette, M.2
Kreil, D.3
Aufstaz, W.4
Matzke, M.5
Matzke, A.6
-
6
-
-
23744472834
-
A SNF2-like protein facilitates dynamic control of DNA methylation
-
This report describes an interesting dual role for the chromatin remodeling protein DRD1. DRD1 is required for de novo methylation and also facilitates a loss of CG methylation when a RNA silencing signal is withdrawn by segregation.
-
Kanno T., Aufsatz W., Jaligot E., Mette M.F., Matzke M., and Matzke A. A SNF2-like protein facilitates dynamic control of DNA methylation. EMBO Rep 6 (2005) 649-655. This report describes an interesting dual role for the chromatin remodeling protein DRD1. DRD1 is required for de novo methylation and also facilitates a loss of CG methylation when a RNA silencing signal is withdrawn by segregation.
-
(2005)
EMBO Rep
, vol.6
, pp. 649-655
-
-
Kanno, T.1
Aufsatz, W.2
Jaligot, E.3
Mette, M.F.4
Matzke, M.5
Matzke, A.6
-
7
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan S.W., Henderson I., and Jacobsen S.E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet 6 (2005) 351-360
-
(2005)
Nat Rev Genet
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.2
Jacobsen, S.E.3
-
8
-
-
11144355185
-
Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats
-
Probst A.V., Fagard M., Proux F., Mourrain P., Boutet S., Earley K., Lawrence R., Pikaard C., Murfett J., Furner I., et al. Arabidopsis histone deacetylase HDA6 is required for maintenance of transcriptional gene silencing and determines nuclear organization of rDNA repeats. Plant Cell 16 (2004) 1021-1034
-
(2004)
Plant Cell
, vol.16
, pp. 1021-1034
-
-
Probst, A.V.1
Fagard, M.2
Proux, F.3
Mourrain, P.4
Boutet, S.5
Earley, K.6
Lawrence, R.7
Pikaard, C.8
Murfett, J.9
Furner, I.10
-
9
-
-
0037428383
-
Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors
-
Brzeski J., and Jerzmanowski A. Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factors. J Biol Chem 278 (2003) 823-828
-
(2003)
J Biol Chem
, vol.278
, pp. 823-828
-
-
Brzeski, J.1
Jerzmanowski, A.2
-
10
-
-
0037058968
-
Locus specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
-
Cao X., and Jacobsen S.E. Locus specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci USA 99 (2002) 16491-16498
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16491-16498
-
-
Cao, X.1
Jacobsen, S.E.2
-
11
-
-
0037074009
-
Ros1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
-
Gong Z., Morales-Ruiz T., Ariza R., Roldan-Arjona T., David L., and Zhu J.K. Ros1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell 111 (2002) 803-814
-
(2002)
Cell
, vol.111
, pp. 803-814
-
-
Gong, Z.1
Morales-Ruiz, T.2
Ariza, R.3
Roldan-Arjona, T.4
David, L.5
Zhu, J.K.6
-
12
-
-
26944485107
-
Preventing transcriptional gene silencing by active DNA demethylation
-
This paper reviews the evidence that the A. thaliana glycosylase/lyase ROS1 causes DNA demethylation. Both genetic and molecular studies suggest that DNA is actively demethylated through a ROS1-mediated base excision repair mechanism. The authors suggest that ROS1 activity might help explain why siRNAs differ in their ability to cause transcriptional gene silencing.
-
Kapoor A., Agius F., and Zhu J.K. Preventing transcriptional gene silencing by active DNA demethylation. FEBS Lett 579 (2005) 5889-5898. This paper reviews the evidence that the A. thaliana glycosylase/lyase ROS1 causes DNA demethylation. Both genetic and molecular studies suggest that DNA is actively demethylated through a ROS1-mediated base excision repair mechanism. The authors suggest that ROS1 activity might help explain why siRNAs differ in their ability to cause transcriptional gene silencing.
-
(2005)
FEBS Lett
, vol.579
, pp. 5889-5898
-
-
Kapoor, A.1
Agius, F.2
Zhu, J.K.3
-
13
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z., Gendel A., Black M., Vaughn M., Dedhia N., McCombie R., Lavine K., Mittal V., May B., Kasschau K., et al. Role of transposable elements in heterochromatin and epigenetic control. Nature 430 (2004) 471-477
-
(2004)
Nature
, vol.430
, pp. 471-477
-
-
Lippman, Z.1
Gendel, A.2
Black, M.3
Vaughn, M.4
Dedhia, N.5
McCombie, R.6
Lavine, K.7
Mittal, V.8
May, B.9
Kasschau, K.10
-
14
-
-
33748629119
-
Genome-wide high resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
The authors fractionated methylated and unmethylated A. thaliana DNA by methylcytosine immunoprecipitation and generated a comprehensive DNA methylation map of the plant genome by hybridizing to a whole-genome tiling array. As expected, heterochromatic, siRNA producing, and repetitive sequences were heavily methylated. Surprisingly, cytosine methylation was found in genes that were highly transcribed. Cytosine methylation was rare in promoters and favored genes that have tissue-specific expression. The expression levels of large number of genes changed in methyltransferase mutant backgrounds.
-
Zhang X., Yazaki J., Sundaresan A., Cokus S., Chan S., Chen H., Henderson I., Shinn P., Pellegrini M., Jacobsen S., and Ecker J. Genome-wide high resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126 (2006) 1189-1201. The authors fractionated methylated and unmethylated A. thaliana DNA by methylcytosine immunoprecipitation and generated a comprehensive DNA methylation map of the plant genome by hybridizing to a whole-genome tiling array. As expected, heterochromatic, siRNA producing, and repetitive sequences were heavily methylated. Surprisingly, cytosine methylation was found in genes that were highly transcribed. Cytosine methylation was rare in promoters and favored genes that have tissue-specific expression. The expression levels of large number of genes changed in methyltransferase mutant backgrounds.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
Cokus, S.4
Chan, S.5
Chen, H.6
Henderson, I.7
Shinn, P.8
Pellegrini, M.9
Jacobsen, S.10
Ecker, J.11
-
15
-
-
24944497900
-
A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription
-
Jiao Y., Jia P., Wang X., Su N., Yu S., Zhang D., Ma L., Feng Q., Jin Z., Li L., et al. A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription. Plant Cell 17 (2005) 1641-1657
-
(2005)
Plant Cell
, vol.17
, pp. 1641-1657
-
-
Jiao, Y.1
Jia, P.2
Wang, X.3
Su, N.4
Yu, S.5
Zhang, D.6
Ma, L.7
Feng, Q.8
Jin, Z.9
Li, L.10
-
16
-
-
12544254467
-
DNA methylation profiling identifies CpG methylation clusters in Arabidopsis genes
-
Tran R.K., Henikoff J., Zilberman D., Ditt R., Jacobsen S., and Henikoff S. DNA methylation profiling identifies CpG methylation clusters in Arabidopsis genes. Curr Biol 15 (2005) 154-159
-
(2005)
Curr Biol
, vol.15
, pp. 154-159
-
-
Tran, R.K.1
Henikoff, J.2
Zilberman, D.3
Ditt, R.4
Jacobsen, S.5
Henikoff, S.6
-
17
-
-
0038219627
-
Heterochromatin in interphase nuclei of Arabidopsis thaliana
-
Fransz P., Soppe W., and Shubert I. Heterochromatin in interphase nuclei of Arabidopsis thaliana. Chromosome Res 11 (2003) 227-240
-
(2003)
Chromosome Res
, vol.11
, pp. 227-240
-
-
Fransz, P.1
Soppe, W.2
Shubert, I.3
-
18
-
-
33644871314
-
Islands of co-expressed neighbouring genes in Arabidopsis thaliana suggest higher-order chromosome domains
-
Zhan S., Horrocks J., and Lukens L. Islands of co-expressed neighbouring genes in Arabidopsis thaliana suggest higher-order chromosome domains. Plant J 45 (2006) 347-357
-
(2006)
Plant J
, vol.45
, pp. 347-357
-
-
Zhan, S.1
Horrocks, J.2
Lukens, L.3
-
19
-
-
10044244768
-
siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
-
Liu J., He Y., Amasino R., and Chen X. siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis. Genes Dev 18 (2004) 2873-2878
-
(2004)
Genes Dev
, vol.18
, pp. 2873-2878
-
-
Liu, J.1
He, Y.2
Amasino, R.3
Chen, X.4
-
20
-
-
0036682518
-
Differential chromatin structure within a tandem array of 100 kb upstream of the maize b1 locus is associated with paramutation
-
Stam M., Belele C., Dorweiler J., and Chandler V.L. Differential chromatin structure within a tandem array of 100 kb upstream of the maize b1 locus is associated with paramutation. Genes Dev 16 (2002) 1906-1918
-
(2002)
Genes Dev
, vol.16
, pp. 1906-1918
-
-
Stam, M.1
Belele, C.2
Dorweiler, J.3
Chandler, V.L.4
-
21
-
-
33746363573
-
An RNA dependent RNA polymerase is required for paramutation in maize
-
Paramutation results in the heritable silencing of one allele by another. This work demonstrates that paramutation of the B-I allele in maize by B′ depends on a RDRP. The RDRP is most similar to RDR2 of A. thaliana, which is involved in siRNA-mediated transcriptional silencing.
-
Alleman M., Sidorenko L., McGinnis K., Seshadri V., Dorweiler J.E., White J., Sikkink K., and Chandler V.L. An RNA dependent RNA polymerase is required for paramutation in maize. Nature 442 (2006) 295-298. Paramutation results in the heritable silencing of one allele by another. This work demonstrates that paramutation of the B-I allele in maize by B′ depends on a RDRP. The RDRP is most similar to RDR2 of A. thaliana, which is involved in siRNA-mediated transcriptional silencing.
-
(2006)
Nature
, vol.442
, pp. 295-298
-
-
Alleman, M.1
Sidorenko, L.2
McGinnis, K.3
Seshadri, V.4
Dorweiler, J.E.5
White, J.6
Sikkink, K.7
Chandler, V.L.8
-
22
-
-
0038376894
-
Temperature shift co-ordinately changes the activity and methylation state of transposon Tam3 in Antirrhinum majus
-
Hashida S.N., Kitamura K., Mikami T., and Kishima Y. Temperature shift co-ordinately changes the activity and methylation state of transposon Tam3 in Antirrhinum majus. Plant Physiol 132 (2003) 1207-1216
-
(2003)
Plant Physiol
, vol.132
, pp. 1207-1216
-
-
Hashida, S.N.1
Kitamura, K.2
Mikami, T.3
Kishima, Y.4
-
23
-
-
33645735516
-
The temperature dependent change in methylation of the Antirrhinum transposon TAM3 is controlled by the activity of its transposase
-
Hashida S.N., Uchiyama U., Martin C., Kishima Y., Sano Y., and Mikami T. The temperature dependent change in methylation of the Antirrhinum transposon TAM3 is controlled by the activity of its transposase. Plant Cell 18 (2006) 104-118
-
(2006)
Plant Cell
, vol.18
, pp. 104-118
-
-
Hashida, S.N.1
Uchiyama, U.2
Martin, C.3
Kishima, Y.4
Sano, Y.5
Mikami, T.6
-
24
-
-
0024758536
-
Genetic interactions underlying flower color patterns in Antirrhinum majus
-
Almeida J., Carpenter R., Robbins T.P., Martin C., and Coen E.S. Genetic interactions underlying flower color patterns in Antirrhinum majus. Genes Dev 3 (1989) 1758-1767
-
(1989)
Genes Dev
, vol.3
, pp. 1758-1767
-
-
Almeida, J.1
Carpenter, R.2
Robbins, T.P.3
Martin, C.4
Coen, E.S.5
-
25
-
-
0026670605
-
Reactivation of Mutator transposable elements of maize by ultraviolet light
-
Walbot V. Reactivation of Mutator transposable elements of maize by ultraviolet light. Mol Gen Genet 234 (1992) 353-360
-
(1992)
Mol Gen Genet
, vol.234
, pp. 353-360
-
-
Walbot, V.1
-
26
-
-
23844474398
-
Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae
-
Grandbastien M.A., Audeon C., Bonnivard E., Casacuberta J.M., Chalhoub B., Costa A.P., Le Q., Melayah D., Petit M., Poncet C., et al. Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae. Cytogenet Genome Res 110 (2005) 229-241
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 229-241
-
-
Grandbastien, M.A.1
Audeon, C.2
Bonnivard, E.3
Casacuberta, J.M.4
Chalhoub, B.5
Costa, A.P.6
Le, Q.7
Melayah, D.8
Petit, M.9
Poncet, C.10
-
27
-
-
0346034923
-
An active DNA transposon family in rice
-
Jiang N., Bao Z., Zhang X., Hirochika H., Eddy S., McCouch S., and Wessler S. An active DNA transposon family in rice. Nature 421 (2003) 163-167
-
(2003)
Nature
, vol.421
, pp. 163-167
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Hirochika, H.4
Eddy, S.5
McCouch, S.6
Wessler, S.7
-
28
-
-
0036889244
-
Non-Mendelian phenomena in allopolyploid genome evolution
-
Liu B., and Wendel J. Non-Mendelian phenomena in allopolyploid genome evolution. Curr Genomics 3 (2002) 489-505
-
(2002)
Curr Genomics
, vol.3
, pp. 489-505
-
-
Liu, B.1
Wendel, J.2
-
29
-
-
0346721803
-
Genome redundancy and plasticity within ancient and recent Brassica crop species
-
Lukens L., Quijada P., Udall J., Pires C., Schranz E., and Osborn T. Genome redundancy and plasticity within ancient and recent Brassica crop species. Biol J Linnean Soc 82 (2004) 665-674
-
(2004)
Biol J Linnean Soc
, vol.82
, pp. 665-674
-
-
Lukens, L.1
Quijada, P.2
Udall, J.3
Pires, C.4
Schranz, E.5
Osborn, T.6
-
30
-
-
0033120047
-
An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis
-
Luff B., Pawlowski L., and Bender J. An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis. Mol Cell 3 (1999) 505-511
-
(1999)
Mol Cell
, vol.3
, pp. 505-511
-
-
Luff, B.1
Pawlowski, L.2
Bender, J.3
-
31
-
-
1642371686
-
An internal rearrangement in an Arabidopsis inverted repeat locus impairs DNA methylation triggered by the locus
-
Melquist S., and Bender J. An internal rearrangement in an Arabidopsis inverted repeat locus impairs DNA methylation triggered by the locus. Genetics 166 (2004) 437-448
-
(2004)
Genetics
, vol.166
, pp. 437-448
-
-
Melquist, S.1
Bender, J.2
-
32
-
-
0036743496
-
The control of natural variation in cytosine methylation in Arabidopsis
-
Riddle N.C., and Richards E. The control of natural variation in cytosine methylation in Arabidopsis. Genetics 162 (2002) 355-363
-
(2002)
Genetics
, vol.162
, pp. 355-363
-
-
Riddle, N.C.1
Richards, E.2
-
33
-
-
14644415590
-
Genetic variation in epigenetic inheritance of ribosomal RNA gene methylation in Arabidopsis
-
Riddle N.C., and Richards E. Genetic variation in epigenetic inheritance of ribosomal RNA gene methylation in Arabidopsis. Plant J 41 (2005) 524-532
-
(2005)
Plant J
, vol.41
, pp. 524-532
-
-
Riddle, N.C.1
Richards, E.2
-
34
-
-
0037474126
-
Argonaute4 control of locus specific siRNA accumulation and DNA and histone methylation
-
Zilberman D., Cao X., and Jacobsen S. Argonaute4 control of locus specific siRNA accumulation and DNA and histone methylation. Science 299 (2003) 716-719
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.3
-
35
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z., Johansen L., Gustafson A., Kasschau K., Lellis A., Zilberman D., Jacobsen S., and Carrington J. Genetic and functional diversification of small RNA pathways in plants. PLOS Biol 2 (2004) 0642-0651
-
(2004)
PLOS Biol
, vol.2
, pp. 0642-0651
-
-
Xie, Z.1
Johansen, L.2
Gustafson, A.3
Kasschau, K.4
Lellis, A.5
Zilberman, D.6
Jacobsen, S.7
Carrington, J.8
-
36
-
-
12244271065
-
An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
-
Malagnac F., Bartee L., and Bender J. An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J 21 (2002) 6842-6852
-
(2002)
EMBO J
, vol.21
, pp. 6842-6852
-
-
Malagnac, F.1
Bartee, L.2
Bender, J.3
-
37
-
-
27944500697
-
H3 Lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
-
Ebbs M.L., Bartee L., and Bender J. H3 Lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases. Mol Cell Biol 25 (2005) 10507-10515
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10507-10515
-
-
Ebbs, M.L.1
Bartee, L.2
Bender, J.3
-
38
-
-
21444449228
-
DNA hypomethylation in 5-azacytidine-induced early flowering lines of flax
-
Fieldes M., Schaeffer S., Krech M., and Brown J. DNA hypomethylation in 5-azacytidine-induced early flowering lines of flax. Theor Appl Genet 11 (2005) 136-149
-
(2005)
Theor Appl Genet
, vol.11
, pp. 136-149
-
-
Fieldes, M.1
Schaeffer, S.2
Krech, M.3
Brown, J.4
-
39
-
-
0033392770
-
Post-green revolution trends in yield potential of temperate maize in the North-Central United States
-
Duvick D.N., and Cassman K.G. Post-green revolution trends in yield potential of temperate maize in the North-Central United States. Crop Sci 39 (1999) 1622-1630
-
(1999)
Crop Sci
, vol.39
, pp. 1622-1630
-
-
Duvick, D.N.1
Cassman, K.G.2
-
40
-
-
23844469207
-
DNA methylation patterns are differentially affected by planting density in maize inbreds and their hybrids
-
Tani E., Polidoros A.N., Nianiou-Obeidat I., and Tsaftaris A.S. DNA methylation patterns are differentially affected by planting density in maize inbreds and their hybrids. Maydica 50 (2005) 19-23
-
(2005)
Maydica
, vol.50
, pp. 19-23
-
-
Tani, E.1
Polidoros, A.N.2
Nianiou-Obeidat, I.3
Tsaftaris, A.S.4
-
41
-
-
33747735632
-
Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis
-
This report utilizes both field trials and expression analyses to study gene regulation in several hybrid maize lines. The authors find that the proportion of allelic, additively expressed genes within a hybrid is positively associated with its yield and heterosis. Hybrids with genes that were biased toward the expression level of the paternal parent tended to have lower yields and heterosis.
-
Guo M., Rupe M., Yang X., Crasta O., Zinselmeier C., Smith O., and Bowen B. Genome-wide transcript analysis of maize hybrids: allelic additive gene expression and yield heterosis. Theor Appl Genet 113 (2006) 831-845. This report utilizes both field trials and expression analyses to study gene regulation in several hybrid maize lines. The authors find that the proportion of allelic, additively expressed genes within a hybrid is positively associated with its yield and heterosis. Hybrids with genes that were biased toward the expression level of the paternal parent tended to have lower yields and heterosis.
-
(2006)
Theor Appl Genet
, vol.113
, pp. 831-845
-
-
Guo, M.1
Rupe, M.2
Yang, X.3
Crasta, O.4
Zinselmeier, C.5
Smith, O.6
Bowen, B.7
-
42
-
-
0028258413
-
Variegated phenotype and developmental methylation changes of a maize allele originating from epimutation
-
Das O.P., and Messing J. Variegated phenotype and developmental methylation changes of a maize allele originating from epimutation. Genetics 136 (1994) 1121-1141
-
(1994)
Genetics
, vol.136
, pp. 1121-1141
-
-
Das, O.P.1
Messing, J.2
-
43
-
-
0033539183
-
An epigenetic mutation responsible for natural variation in floral symmetry
-
Cubas P., Vincent C., and Coen E. An epigenetic mutation responsible for natural variation in floral symmetry. Nature 401 (1999) 157-161
-
(1999)
Nature
, vol.401
, pp. 157-161
-
-
Cubas, P.1
Vincent, C.2
Coen, E.3
-
44
-
-
33645832572
-
Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids
-
1. CpG changes are much more frequent and often occur at the same loci across different lines.
-
1. CpG changes are much more frequent and often occur at the same loci across different lines.
-
(2006)
Plant Physiol
, vol.140
, pp. 336-348
-
-
Lukens, L.N.1
Pires, J.C.2
Leon, E.3
Vogelzang, R.4
Oslach, L.5
Osborn, T.6
-
45
-
-
0034879460
-
Polyploid formation in cotton is not accompanied by rapid genomic changes
-
Liu B., Brubaker C.L., Mergeai G., Cronn R., and Wendel J.F. Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44 (2001) 321-330
-
(2001)
Genome
, vol.44
, pp. 321-330
-
-
Liu, B.1
Brubaker, C.L.2
Mergeai, G.3
Cronn, R.4
Wendel, J.F.5
-
46
-
-
34248145207
-
Infrapspecific DNA methylation polymorphism in cotton (Gossypium hirsutum)
-
Keyte A.L., Percifield R., Liu B., and Wendel J.F. Infrapspecific DNA methylation polymorphism in cotton (Gossypium hirsutum). J Hered 97 (2006) 444-450
-
(2006)
J Hered
, vol.97
, pp. 444-450
-
-
Keyte, A.L.1
Percifield, R.2
Liu, B.3
Wendel, J.F.4
-
47
-
-
0035117367
-
Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars
-
Ashikawa I. Surveying CpG methylation at 5′-CCGG in the genomes of rice cultivars. Plant Mol Biol 45 (2001) 31-39
-
(2001)
Plant Mol Biol
, vol.45
, pp. 31-39
-
-
Ashikawa, I.1
-
48
-
-
0036456019
-
Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers
-
Cervera M.T., Ruiz-Garcia L., and Martinez-Zapater J.M. Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol Genet Genomics 268 (2002) 543-552
-
(2002)
Mol Genet Genomics
, vol.268
, pp. 543-552
-
-
Cervera, M.T.1
Ruiz-Garcia, L.2
Martinez-Zapater, J.M.3
-
50
-
-
0034788887
-
Tissue-specific patterns of a maize Myb transcription factor are epigenetically regulated
-
Cocciolone S.M., Chopra S., Flint-Garcia S., McMullen M., and Peterson T. Tissue-specific patterns of a maize Myb transcription factor are epigenetically regulated. Plant J 27 (2001) 467-478
-
(2001)
Plant J
, vol.27
, pp. 467-478
-
-
Cocciolone, S.M.1
Chopra, S.2
Flint-Garcia, S.3
McMullen, M.4
Peterson, T.5
-
51
-
-
0031798052
-
A maize Myb homolog is encoded by a multicopy gene complex
-
Chopra S., Athma P., Li X., and Peterson T. A maize Myb homolog is encoded by a multicopy gene complex. Mol Gen Genet 260 (1998) 372-380
-
(1998)
Mol Gen Genet
, vol.260
, pp. 372-380
-
-
Chopra, S.1
Athma, P.2
Li, X.3
Peterson, T.4
-
52
-
-
14744272333
-
The effect of stress on genome regulation and structure
-
Madlung A., and Comai L. The effect of stress on genome regulation and structure. Ann Bot 94 (2004) 481-495
-
(2004)
Ann Bot
, vol.94
, pp. 481-495
-
-
Madlung, A.1
Comai, L.2
-
53
-
-
0037020179
-
Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress
-
Steward N., Ito M., Yamaguchi Y., Koizumi N., and Sano H. Periodic DNA methylation in maize nucleosomes and demethylation by environmental stress. J Biol Chem 277 (2002) 37741-37746
-
(2002)
J Biol Chem
, vol.277
, pp. 37741-37746
-
-
Steward, N.1
Ito, M.2
Yamaguchi, Y.3
Koizumi, N.4
Sano, H.5
-
54
-
-
0030766180
-
Hypermethylation of tobacco heterochromatic loci in response to osmotic stress
-
Kovarik A., Koukalova B., Bezdek M., and Opatrny Z. Hypermethylation of tobacco heterochromatic loci in response to osmotic stress. Theor Appl Genet 95 (1997) 301-306
-
(1997)
Theor Appl Genet
, vol.95
, pp. 301-306
-
-
Kovarik, A.1
Koukalova, B.2
Bezdek, M.3
Opatrny, Z.4
-
55
-
-
34247399015
-
-
Choi CS, Sano H: Abiotic-stress induced demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants. Mol Genet Genomics 2007, in press.
-
-
-
-
56
-
-
3142738197
-
Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp
-
Aina R., Sgorbati S., Santagostino A., Labra M., Ghiani A., and Citterio S. Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp. Physiol Plant 121 (2004) 472-480
-
(2004)
Physiol Plant
, vol.121
, pp. 472-480
-
-
Aina, R.1
Sgorbati, S.2
Santagostino, A.3
Labra, M.4
Ghiani, A.5
Citterio, S.6
-
57
-
-
0036871752
-
Analysis of cytosine methylation pattern in response to water deficit in pea root tips
-
Labra M., Ghiani A., Citterio S., Sgorbati S., Sala F., Vannini C., Ruffini-Castiglione M., and Bracale M. Analysis of cytosine methylation pattern in response to water deficit in pea root tips. Plant Biol 4 (2002) 694-699
-
(2002)
Plant Biol
, vol.4
, pp. 694-699
-
-
Labra, M.1
Ghiani, A.2
Citterio, S.3
Sgorbati, S.4
Sala, F.5
Vannini, C.6
Ruffini-Castiglione, M.7
Bracale, M.8
-
58
-
-
0033005346
-
Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by methylation sensitive amplification polymorphism technique
-
Xiong L.Z., Xu C., Saghai Maroof M.A., and Zhang Q. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by methylation sensitive amplification polymorphism technique. Mol Gen Genet 261 (1999) 439-446
-
(1999)
Mol Gen Genet
, vol.261
, pp. 439-446
-
-
Xiong, L.Z.1
Xu, C.2
Saghai Maroof, M.A.3
Zhang, Q.4
-
59
-
-
0034866855
-
Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
-
Shaked H., Kashkush K., Ozkan H., Feldman M., and Levy A. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13 (2001) 1749-1759
-
(2001)
Plant Cell
, vol.13
, pp. 1749-1759
-
-
Shaked, H.1
Kashkush, K.2
Ozkan, H.3
Feldman, M.4
Levy, A.5
-
60
-
-
1042290675
-
Extensive maternal DNA hypomethylation in the endosperm of Zea mays
-
Lauria M., Rupe M., Guo M., Kranz E., Pirona R., Viotti A., and Lund G. Extensive maternal DNA hypomethylation in the endosperm of Zea mays. Plant Cell 16 (2004) 510-522
-
(2004)
Plant Cell
, vol.16
, pp. 510-522
-
-
Lauria, M.1
Rupe, M.2
Guo, M.3
Kranz, E.4
Pirona, R.5
Viotti, A.6
Lund, G.7
-
61
-
-
0037354734
-
Arabidopsis met1 cytosine methyltransferase mutants
-
Kankel M., Ramsey D., Stokes T., Flowers S., Haag J., Jeddeloh J., Riddle N., Verbsky M., and Richards E. Arabidopsis met1 cytosine methyltransferase mutants. Genetics 163 (2003) 1109-1122
-
(2003)
Genetics
, vol.163
, pp. 1109-1122
-
-
Kankel, M.1
Ramsey, D.2
Stokes, T.3
Flowers, S.4
Haag, J.5
Jeddeloh, J.6
Riddle, N.7
Verbsky, M.8
Richards, E.9
-
62
-
-
0032939382
-
Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana
-
Kakutani T., Munakata K., Richards E.J., and Hirochika H. Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana. Genetics 151 (1999) 831-838
-
(1999)
Genetics
, vol.151
, pp. 831-838
-
-
Kakutani, T.1
Munakata, K.2
Richards, E.J.3
Hirochika, H.4
-
63
-
-
33748324641
-
Transgeneration memory of stress in plants
-
Using a β-glucuronidase (GUS)-based construct that allows for quantification of somatic homologous recombination, the authors found that plants treated with UV light and flagellin had higher rates of homologous recombination. High rates of recombination persisted in subsequent generations and did not depend on the presence of the construct.
-
Molinier J., Ries G., Zipfel C., and Hohn B. Transgeneration memory of stress in plants. Nature 442 (2006) 1046-1049. Using a β-glucuronidase (GUS)-based construct that allows for quantification of somatic homologous recombination, the authors found that plants treated with UV light and flagellin had higher rates of homologous recombination. High rates of recombination persisted in subsequent generations and did not depend on the presence of the construct.
-
(2006)
Nature
, vol.442
, pp. 1046-1049
-
-
Molinier, J.1
Ries, G.2
Zipfel, C.3
Hohn, B.4
-
64
-
-
33750964714
-
Impacts of genetic bottlenecks on soybean genome diversity
-
Hyten D.L., Song Q., Zhu Y., Choi I., Nelson R., Costa J., Specht J., Shoemaker R.C., and Cregan P.B. Impacts of genetic bottlenecks on soybean genome diversity. Proc Natl Acad Sci USA 103 (2006) 16666-16671
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 16666-16671
-
-
Hyten, D.L.1
Song, Q.2
Zhu, Y.3
Choi, I.4
Nelson, R.5
Costa, J.6
Specht, J.7
Shoemaker, R.C.8
Cregan, P.B.9
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