-
1
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder H, Sligar SG, Wolynes PG (1991) The energy landscapes and motions of proteins. Science 254 5038:1598-1603.
-
(1991)
Science
, vol.254
, Issue.5038
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
3
-
-
33645765218
-
Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin
-
Bruji J, Hermans RIZ, Walther KA, Fernandez JM (2006) Single-molecule force spectroscopy reveals signatures of glassy dynamics in the energy landscape of ubiquitin. Nature Physics 2:282-286.
-
(2006)
Nature Physics
, vol.2
, pp. 282-286
-
-
Bruji, J.1
Hermans, R.I.Z.2
Walther, K.A.3
Fernandez, J.M.4
-
4
-
-
58149395019
-
How main-chains of proteins explore the free-energy landscape in native states
-
Senet P, Maisuradze GG, Foulie C, Delarue P, Scheraga HA (2008) How main-chains of proteins explore the free-energy landscape in native states. Proc Natl Acad Sci USA 105:19708-19713.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19708-19713
-
-
Senet, P.1
Maisuradze, G.G.2
Foulie, C.3
Delarue, P.4
Scheraga, H.A.5
-
5
-
-
37249032102
-
Dynamic personalities of proteins
-
Henzler-Wildman K, Keren D (2007) Dynamic personalities of proteins. Nature 450:964-972.
-
(2007)
Nature
, vol.450
, pp. 964-972
-
-
Henzler-Wildman, K.1
Keren, D.2
-
6
-
-
27144465458
-
Observation of a power-law memory kernel for fluctuations within a single protein molecule
-
MinW, Luo G, Cherayil BJ, Kou SC, Xie XS (2005) Observation of a power-law memory kernel for fluctuations within a single protein molecule. Phys Rev Lett 94:198302.
-
(2005)
Phys Rev Lett
, vol.94
, pp. 198302
-
-
Min, W.1
Luo, G.2
Cherayil, B.J.3
Kou, S.C.4
Xie, X.S.5
-
7
-
-
0001247912
-
Fractal form of proteins
-
Stapleton HJ, Allen JP, Flynn CP, Stinson DG, Kurtz SR (1980) Fractal form of proteins. Phys Rev Lett 45:1456-1459.
-
(1980)
Phys Rev Lett
, vol.45
, pp. 1456-1459
-
-
Stapleton, H.J.1
Allen, J.P.2
Flynn, C.P.3
Stinson, D.G.4
Kurtz, S.R.5
-
8
-
-
25144521697
-
Vibrational density of states of hen egg white lysozyme
-
DOI 10.1134/1.2045334
-
Lushnikov SG, Svanidze AV, Sashin IL (2005) Vibrational density of states of hen egg white lysozyme. JETP Letters 82:30-33. (Pubitemid 41337599)
-
(2005)
JETP Letters
, vol.82
, Issue.1
, pp. 30-33
-
-
Lushnikov, S.G.1
Svanidze, A.V.2
Sashin, I.L.3
-
9
-
-
0347319403
-
Anomalous diffusion of vibrational energy in proteins
-
Yu X, Leitner DM (2003) Anomalous diffusion of vibrational energy in proteins. Journal of Chemical Physics 119:12673.
-
(2003)
Journal of Chemical Physics
, vol.119
, pp. 12673
-
-
Yu, X.1
Leitner, D.M.2
-
10
-
-
70449394017
-
Revisiting the myths of protein interior: Studying proteins with mass-fractal hydrophobicity-fractal and polarizability-fractal dimensions
-
doi:10.1371/journal.pone.0007361
-
Banerji A, Ghosh I (2009) Revisiting the myths of protein interior: studying proteins with mass-fractal hydrophobicity-fractal and polarizability-fractal dimensions. PLoS ONE 4:e7361 doi:10.1371/journal.pone. 0007361.
-
(2009)
PLoS ONE
, vol.4
-
-
Banerji, A.1
Ghosh, I.2
-
11
-
-
2442581510
-
Topological Thermal Instability and Length of Proteins
-
DOI 10.1002/prot.20072
-
Burioni R, Cassi D, Cecconi F, Vulpiani A (2004) Topological thermal instability and length of proteins. Proteins 55:529-535. (Pubitemid 38620078)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.55
, Issue.3
, pp. 529-535
-
-
Burioni, R.1
Cassi, D.2
Cecconi, F.3
Vulpiani, A.4
-
12
-
-
44149087864
-
Proteins: Coexistence of stability and flexibility
-
Reuveni S, Granek R, Klafter J (2008) Proteins: coexistence of stability and flexibility. Phys Rev Lett 100:208101.
-
(2008)
Phys Rev Lett
, vol.100
, pp. 208101
-
-
Reuveni, S.1
Granek, R.2
Klafter, J.3
-
13
-
-
70350536555
-
Coexistence of flexibility and stability of proteins: An equation of state
-
doi:10.1371/journal. pone.0007296
-
de Leeuw M, Reuveni S, Klafter J, Granek R (2009) Coexistence of flexibility and stability of proteins: an equation of state. PLoS ONE 4:e7296 doi:10.1371/journal. pone.0007296.
-
(2009)
PLoS ONE
, vol.4
-
-
De Leeuw, M.1
Reuveni, S.2
Klafter, J.3
Granek, R.4
-
14
-
-
72949101076
-
Molecules: What kind of a bag of atoms?
-
Chowdary PD, Gruebele M (2009) Molecules: what kind of a bag of atoms? J Phys Chem A 113:13139-13143.
-
(2009)
J Phys Chem A
, vol.113
, pp. 13139-13143
-
-
Chowdary, P.D.1
Gruebele, M.2
-
15
-
-
41349085748
-
Mass fractal dimension and the compactness of proteins
-
Enright MB, Leitner DM (2005) Mass fractal dimension and the compactness of proteins. Phys Rev E 71:011912.
-
(2005)
Phys Rev E
, vol.71
, pp. 011912
-
-
Enright, M.B.1
Leitner, D.M.2
-
16
-
-
0001058199
-
Low-frequency modes in proteins: Use of the effective-medium approximation to interpret the fractal dimension observed in electron-spin relaxation measurements
-
Elber R, Karplus M (1986) Low-frequency modes in proteins: use of the effective-medium approximation to interpret the fractal dimension observed in electron-spin relaxation measurements. Phys Rev Lett 56:394-397.
-
(1986)
Phys Rev Lett
, vol.56
, pp. 394-397
-
-
Elber, R.1
Karplus, M.2
-
17
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar I, Atilgan AR, Erman B (1997) Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des 2:173-181. (Pubitemid 127740467)
-
(1997)
Folding and Design
, vol.2
, Issue.3
, pp. 173-181
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
19
-
-
12044251059
-
Dynamical properties of fractal networks: Scaling, numerical simulations, and physical realizations
-
Nakayama T, Kousuke Y, Orbach RL (1994) Dynamical properties of fractal networks: scaling, numerical simulations, and physical realizations. Rev Mod Phys 66:381-443. (Pubitemid 24987225)
-
(1994)
Reviews of Modern Physics
, vol.66
, Issue.2
, pp. 381-443
-
-
Nakayama, T.1
Yakubo, K.2
Orbach, R.L.3
-
20
-
-
35948955551
-
First-passage times in complex scale-invariant media
-
DOI 10.1038/nature06201, PII NATURE06201
-
Condamin S, Bénichou O, Tejedor V, Voituriez R, Klafter J (2007) First-passage times in complex scale-invariant media. Nature 450:77-80. (Pubitemid 350070561)
-
(2007)
Nature
, vol.450
, Issue.7166
, pp. 77-80
-
-
Condamin, S.1
Benichou, O.2
Tejedor, V.3
Voituriez, R.4
Klafter, J.5
-
21
-
-
77951713728
-
Vibrational shortcut to the mean-first-passagetime problem
-
Reuveni S, Granek R, Klafter J (2010) Vibrational shortcut to the mean-first-passagetime problem. Phys Rev E 85:040103(R).
-
(2010)
Phys Rev E
, vol.85
-
-
Reuveni, S.1
Granek, R.2
Klafter, J.3
-
23
-
-
27144546670
-
Fractons in proteins: Can they lead to anomalously decaying time autocorrelations?
-
Granek R, Klafter J (2005) Fractons in proteins: can they lead to anomalously decaying time autocorrelations? Phys Rev Lett 95:098106.
-
(2005)
Phys Rev Lett
, vol.95
, pp. 098106
-
-
Granek, R.1
Klafter, J.2
-
24
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal structures: Quasi-chemical approximation
-
Miyazawa S, Jernigan RL (1985) Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules 18:534-552.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
25
-
-
0031566950
-
Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation
-
DOI 10.1006/jmbi.1996.0758
-
Bahar I, Jernigan RL (1997) Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separations. Journal of Molecular Biology 266:195-214. (Pubitemid 27170528)
-
(1997)
Journal of Molecular Biology
, vol.266
, Issue.1
, pp. 195-214
-
-
Bahar, I.1
Jernigan, R.L.2
-
27
-
-
34249945151
-
Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions
-
Yang LW, et al. (2007) Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions. Structure 15:741-749.
-
(2007)
Structure
, vol.15
, pp. 741-749
-
-
Yang, L.W.1
-
28
-
-
0025015392
-
Anatomy of a conformational change: Hinged "lid" motion of the triosephosphate isomerase loop
-
Joseph D, Petsko GA, Karplus M (1990) Anatomy of a conformational change: hinged "lid" motion of the triosephosphate isomerase loop. Science 249:1425.
-
(1990)
Science
, vol.249
, pp. 1425
-
-
Joseph, D.1
Petsko, G.A.2
Karplus, M.3
-
29
-
-
0025845767
-
Ligand binding to heme proteins: Connection between dynamics and function
-
Steinbach PJ, et al. (1991) Ligand binding to heme proteins: connection between dynamics and function. Biochemistry 30:3988.
-
(1991)
Biochemistry
, vol.30
, pp. 3988
-
-
Steinbach, P.J.1
-
30
-
-
0026720247
-
Crystalline ribonuclease a loses function below the dynamical transition at 220 K
-
Rasmussen BF, Stock AM, Ringe D, Petsko GA (1992) Crystalline ribonuclease A loses function below the dynamical transition at 220 K. Nature 357:423.
-
(1992)
Nature
, vol.357
, pp. 423
-
-
Rasmussen, B.F.1
Stock, A.M.2
Ringe, D.3
Petsko, G.A.4
-
31
-
-
43949129091
-
Energy flow in proteins
-
Leitner DM (2008) Energy flow in proteins. Annu Rev Phys Chem 59:233-259.
-
(2008)
Annu Rev Phys Chem
, vol.59
, pp. 233-259
-
-
Leitner, D.M.1
-
32
-
-
18744389451
-
The study of protein folding and dynamics by determination of intramolecular distance distributions and their fluctuations using ensemble and single-molecule FRET measurements
-
Haas E (2005) The study of protein folding and dynamics by determination of intramolecular distance distributions and their fluctuations using ensemble and single-molecule FRET measurements. Chem Phys Chem 6:858-870.
-
(2005)
Chem Phys Chem
, vol.6
, pp. 858-870
-
-
Haas, E.1
-
33
-
-
34848882812
-
Signal propagation in proteins and relation to equilibrium fluctuations
-
doi:10.1371/journal.pcbi.0030172
-
Chennubhotla C, Bahar I (2007) Signal propagation in proteins and relation to equilibrium fluctuations. PLoS Comput Biol 3:e172 doi:10.1371/journal.pcbi.0030172.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Chennubhotla, C.1
Bahar, I.2
-
34
-
-
0027074883
-
Domain motions in phosphoglycerate kinase: Determination of interdomain distance distributions by site-specific labeling and time-resolved fluorescence energy transfer
-
DOI 10.1073/pnas.89.24.11764
-
Haran G, Haas E, Szpikowska BK, Mas MT (1992) Domain motions in phosphoglycerate kinase: determination of interdomain distance distributions by site-specific labeling and time-resolved fluorescence energy transfer. Proc Natl Acad Sci USA 89:11764-11768. (Pubitemid 23004724)
-
(1992)
Proceedings of the National Academy of Sciences of the United States of America
, vol.89
, Issue.24
, pp. 11764-11768
-
-
Haran, G.1
Haas, E.2
Szpikowska, B.K.3
Mas, M.T.4
-
36
-
-
36549043024
-
Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
-
DOI 10.1016/j.sbi.2007.09.011, PII S0959440X07001534, Catalysis and Regulation /Protein
-
Bahar I, Chennubhotla C, Tobi D (2007) Intrinsic enzyme motions in the unbound state and relation to allosteric regulation. Curr Opin Struc Biol 17:633-640. (Pubitemid 350180409)
-
(2007)
Current Opinion in Structural Biology
, vol.17
, Issue.6
, pp. 633-640
-
-
Bahar, I.1
Chennubhotla, C.2
Tobi, D.3
-
37
-
-
0031386328
-
From Semi-Flexible Polymers to Membranes: Anomalous Diffusion and Reptation
-
Granek R (1997) From semi-flexible polymers to membranes: anomalous diffusion and reptation. J Phys 7:1761-1788. (Pubitemid 127806180)
-
(1997)
Journal de Physique I
, vol.7
, Issue.12
, pp. 1761-1788
-
-
Granek, R.1
-
38
-
-
0001325705
-
Semiflexible polymer network: A view from inside
-
Caspi A, Elbaum M, Granek R, Lachish A, Zbaida D (1998) Semiflexible polymer network: a view from inside. Phys Rev Lett 80:1106-1109. (Pubitemid 128622285)
-
(1998)
Physical Review Letters
, vol.80
, Issue.5
, pp. 1106-1109
-
-
Caspi, A.1
Elbaum, M.2
Granek, R.3
Lachish, A.4
Zbaida, D.5
-
40
-
-
67649534573
-
Mapping proton wires in proteins: Carbonic anhydrase and GFP chromophore biosynthesis
-
Shinobu A, Agmon N (1997) Mapping proton wires in proteins: carbonic anhydrase and GFP chromophore biosynthesis. Phys J Chem A 113:7253-7266.
-
(1997)
Phys J Chem A
, vol.113
, pp. 7253-7266
-
-
Shinobu, A.1
Agmon, N.2
|